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Sed0016476 (gene) of Chayote v1 genome

Gene IDSed0016476
OrganismSechium edule (Chayote v1)
DescriptionRNase H domain-containing protein
Genome locationLG07:18235620..18236135
RNA-Seq ExpressionSed0016476
SyntenySed0016476
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily
IPR044730 - Ribonuclease H-like domain, plant type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_023887146.1 uncharacterized protein LOC111999255 [Quercus suber]8.0e-1636.67Show/hide
Query:  KINTDAATNIKRRRSGYGAIARNEGGEIMYAISQPIEWVVDAELVEALAIRNSVEFALDMGFHFIEVESNAQRVTGMLTGKIDCRTEVEQIVEETRVLAH
        KIN D AT      +G GAI RN+ G +M A +  I      E+VE LA R+++ FA ++GF+ I VE +++ V   L+      + +  IV++ +VLA 
Subjt:  KINTDAATNIKRRRSGYGAIARNEGGEIMYAISQPIEWVVDAELVEALAIRNSVEFALDMGFHFIEVESNAQRVTGMLTGKIDCRTEVEQIVEETRVLAH

Query:  CLKSVKFSWCRHQANKLAHFLAKLAALGENANWWMEECPPCMLDIYRSKL
         L +V F+  R Q N++AH LA+LA    +   WME+ PP +  +Y S++
Subjt:  CLKSVKFSWCRHQANKLAHFLAKLAALGENANWWMEECPPCMLDIYRSKL

XP_023904177.1 uncharacterized protein LOC112015942 [Quercus suber]2.3e-1838.78Show/hide
Query:  PFYKINTDAATNIKRRRSGYGAIARNEGGEIMYAISQPIEWVVDAELVEALAIRNSVEFALDMGFHFIEVESNAQRVTGMLTGKIDCRTEVEQIVEETRV
        PF+K+N DAA      RSG+GA+ RNE GE+M A+S     V  ++  E LA R ++EFA+D GF+ + +E ++  V   L+      + V  +V + + 
Subjt:  PFYKINTDAATNIKRRRSGYGAIARNEGGEIMYAISQPIEWVVDAELVEALAIRNSVEFALDMGFHFIEVESNAQRVTGMLTGKIDCRTEVEQIVEETRV

Query:  LAHCLKSVKFSWCRHQANKLAHFLAKLAALGENANWWMEECPPCMLD
        L   L+ V FSW     N++AH LAK A   E   +WME+ PP  LD
Subjt:  LAHCLKSVKFSWCRHQANKLAHFLAKLAALGENANWWMEECPPCMLD

XP_023914985.1 cytochrome P450 CYP82D47-like [Quercus suber]1.6e-1630.54Show/hide
Query:  FYKINTDAATNIKRRRSGYGAIARNEGGEIMYAISQPIEWVVDAELVEALAIRNSVEFALDMGFHFIEVESNAQRVTGMLTGKIDCRTEVEQIVEETRVL
        ++K N D A   +   +G G +  +  G ++ A+S+ +E V +AE++E LAI+ ++ FA++  F+ + +ES++  V   +    D    V  I+E+ + L
Subjt:  FYKINTDAATNIKRRRSGYGAIARNEGGEIMYAISQPIEWVVDAELVEALAIRNSVEFALDMGFHFIEVESNAQRVTGMLTGKIDCRTEVEQIVEETRVL

Query:  AHCLKSVKFSWCRHQANKLAHFLAKLAALGENANWWMEECPPCMLDIY------RSKLGIATSRVVG
        A  LKS  F   + +AN++AH L + A   +    W+EE PPC+ D+       R  L I T  + G
Subjt:  AHCLKSVKFSWCRHQANKLAHFLAKLAALGENANWWMEECPPCMLDIY------RSKLGIATSRVVG

XP_030936648.1 uncharacterized protein LOC115961887 [Quercus lobata]6.1e-1638.36Show/hide
Query:  FYKINTDAATNIKRRRSGYGAIARNEGGEIMYAISQPIEWVVDAELVEALAIRNSVEFALDMGFHFIEVESNAQRVTGMLTGKIDCRTEVEQIVEETRVL
        F+K+N D A   +   SGYGA+ RNE GE+M A++     V D+E VE +A R ++EFA+D GF  I +E N   V  M++      + +  I E+   L
Subjt:  FYKINTDAATNIKRRRSGYGAIARNEGGEIMYAISQPIEWVVDAELVEALAIRNSVEFALDMGFHFIEVESNAQRVTGMLTGKIDCRTEVEQIVEETRVL

Query:  AHCLKSVKFSWCRHQANKLAHFLAKLAALGENANWWMEECPPCMLD
        A   +S+ ++  R  AN +AH LA+ A L +N   W+EE PP  +D
Subjt:  AHCLKSVKFSWCRHQANKLAHFLAKLAALGENANWWMEECPPCMLD

XP_030945898.1 uncharacterized protein LOC115970400 [Quercus lobata]2.1e-1634.39Show/hide
Query:  MAPFYKINTDAATNIKRRRSGYGAIARNEGGEIMYAISQPIEWVVDAELVEALAIRNSVEFALDMGFHFIEVESNAQRVTGMLTGKIDCRTEVEQIVEET
        + P YK N DAA   +   +G G + R+ GG I+ A+S+ I+     EL EALA R +V FA +     + VE +  RV   L  +  C T    + EET
Subjt:  MAPFYKINTDAATNIKRRRSGYGAIARNEGGEIMYAISQPIEWVVDAELVEALAIRNSVEFALDMGFHFIEVESNAQRVTGMLTGKIDCRTEVEQIVEET

Query:  RVLAHCLKSVKFSWCRHQANKLAHFLAKLAALGENANWWMEECPPCMLDIYRSKLGI
        R L  CL+   F   + + NKLAH LA+ A L  + + W+EE P  +  +++    +
Subjt:  RVLAHCLKSVKFSWCRHQANKLAHFLAKLAALGENANWWMEECPPCMLDIYRSKLGI

TrEMBL top hitse value%identityAlignment
A0A2N9EYC3 Reverse transcriptase domain-containing protein1.6e-1737.59Show/hide
Query:  YKINTDAATNIKRRRSGYGAIARNEGGEIMYAISQPIEWVVDAELVEALAIRNSVEFALDMGFHFIEVESNAQRVTGMLTGKIDCRTEVEQIVEETRVLA
        YK+N D A    R  +G G I RN  GE+M A+SQ I +    E VEA A R++++FA D GF  I++E ++  +   +     C T    I+E+ R +A
Subjt:  YKINTDAATNIKRRRSGYGAIARNEGGEIMYAISQPIEWVVDAELVEALAIRNSVEFALDMGFHFIEVESNAQRVTGMLTGKIDCRTEVEQIVEETRVLA

Query:  HCLKSVKFSWCRHQANKLAHFLAKLAALGENANWWMEECPP
          L+SV+F   + + N +AH LAK A + +    WME  PP
Subjt:  HCLKSVKFSWCRHQANKLAHFLAKLAALGENANWWMEECPP

A0A2N9IYC8 Reverse transcriptase domain-containing protein5.4e-1837.59Show/hide
Query:  YKINTDAATNIKRRRSGYGAIARNEGGEIMYAISQPIEWVVDAELVEALAIRNSVEFALDMGFHFIEVESNAQRVTGMLTGKIDCRTEVEQIVEETRVLA
        YK+N D A    R  +G G I RN  GE+M A+SQ I +    E VEA A R++++FA D+GF  I++E ++  +   +     C T    I+E+ R +A
Subjt:  YKINTDAATNIKRRRSGYGAIARNEGGEIMYAISQPIEWVVDAELVEALAIRNSVEFALDMGFHFIEVESNAQRVTGMLTGKIDCRTEVEQIVEETRVLA

Query:  HCLKSVKFSWCRHQANKLAHFLAKLAALGENANWWMEECPP
          L+SV+F   + + N +AH LAK A + +    WME  PP
Subjt:  HCLKSVKFSWCRHQANKLAHFLAKLAALGENANWWMEECPP

A0A7N2L9Q3 RNase H domain-containing protein7.1e-1835.44Show/hide
Query:  PFYKINTDAATNIKRRRSGYGAIARNEGGEIMYAISQPIEWVVDAELVEALAIRNSVEFALDMGFHFIEVESNAQRVTGMLTGKIDCRTEVEQIVEETRV
        P YK N DAA   +   +G G + R+ GG I+ A+S+ I+     EL EALA R +V FA ++    + VE +  RV   L  +  C T    +VEETR 
Subjt:  PFYKINTDAATNIKRRRSGYGAIARNEGGEIMYAISQPIEWVVDAELVEALAIRNSVEFALDMGFHFIEVESNAQRVTGMLTGKIDCRTEVEQIVEETRV

Query:  LAHCLKSVKFSWCRHQANKLAHFLAKLAALGENANWWMEECPPCMLDIYRSKLGIATS
        L  CL+   F   + + NKLAH LA+ A L  + + W+EE P  +  +++    +  S
Subjt:  LAHCLKSVKFSWCRHQANKLAHFLAKLAALGENANWWMEECPPCMLDIYRSKLGIATS

A0A7N2LIC5 RNase H domain-containing protein4.1e-1839.44Show/hide
Query:  PFYKINTDAATNIKRRRSGYGAIARNEGGEIMYAISQPIEWVVDAELVEALAIRNSVEFALDMGFHFIEVESNAQRVTGMLTGKIDCRTEVEQIVEETRV
        P YK N DAA       +G G + R+ GG ++ A+S+ I+     EL EALA R +V FA ++    + VE +  RV   L G+  C T    +VEETR 
Subjt:  PFYKINTDAATNIKRRRSGYGAIARNEGGEIMYAISQPIEWVVDAELVEALAIRNSVEFALDMGFHFIEVESNAQRVTGMLTGKIDCRTEVEQIVEETRV

Query:  LAHCLKSVKFSWCRHQANKLAHFLAKLAALGENANWWMEECP
        L  CL+   F   + + NKLAH LA+ A L  N + W+EE P
Subjt:  LAHCLKSVKFSWCRHQANKLAHFLAKLAALGENANWWMEECP

A0A7N2N656 RNase H domain-containing protein2.7e-1738.73Show/hide
Query:  PFYKINTDAATNIKRRRSGYGAIARNEGGEIMYAISQPIEWVVDAELVEALAIRNSVEFALDMGFHFIEVESNAQRVTGMLTGKIDCRTEVEQIVEETRV
        P YK N DAA       +G G + R+ GG ++ A+S+ I+     EL EALA R +V FA ++    + VE +  RV   L G+  C T    +VEETR 
Subjt:  PFYKINTDAATNIKRRRSGYGAIARNEGGEIMYAISQPIEWVVDAELVEALAIRNSVEFALDMGFHFIEVESNAQRVTGMLTGKIDCRTEVEQIVEETRV

Query:  LAHCLKSVKFSWCRHQANKLAHFLAKLAALGENANWWMEECP
        L  CL+   F   + + NKLAH LA+ A L  + + W+EE P
Subjt:  LAHCLKSVKFSWCRHQANKLAHFLAKLAALGENANWWMEECP

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT2G34320.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein8.0e-0627.64Show/hide
Query:  KINTDAATNIKRRRSGYGAIARNEGGEIMYAISQPIEWVVDAELVEALAIRNSVEFALDMGFHFIEVESNAQRVTGMLTGKIDCRTEVEQIVEETRVLAH
        K NTDA   ++  R G G I RNE G +++  ++ +    +    E  A+R +V       +  I  ES+AQ +  +L    D    ++  +E+ + L H
Subjt:  KINTDAATNIKRRRSGYGAIARNEGGEIMYAISQPIEWVVDAELVEALAIRNSVEFALDMGFHFIEVESNAQRVTGMLTGKIDCRTEVEQIVEETRVLAH

Query:  CLKSVKFSWCRHQANKLAHFLAK
          + VKF +     NK+A  +A+
Subjt:  CLKSVKFSWCRHQANKLAHFLAK

AT3G09510.1 Ribonuclease H-like superfamily protein2.6e-0424.41Show/hide
Query:  APFYKINTDAATNIKRRRSGYGAIARNEGGEIMYAISQPIEWVVDAELVEALAIRNSVEFALDMGFHFIEVESNAQRVTGMLTGKIDCRTEVEQIVEETR
        A + K N DA  ++++  +  G I RN  G  +   S  +    +    E  A+  +++     G+  + +E + Q +  ++ G I   + +   +E+  
Subjt:  APFYKINTDAATNIKRRRSGYGAIARNEGGEIMYAISQPIEWVVDAELVEALAIRNSVEFALDMGFHFIEVESNAQRVTGMLTGKIDCRTEVEQIVEETR

Query:  VLAHCLKSVKFSWCRHQANKLAHFLAK
          A+   S++F + R + NKLAH LAK
Subjt:  VLAHCLKSVKFSWCRHQANKLAHFLAK


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCACCTTTTTACAAAATAAATACGGATGCGGCCACCAATATTAAGAGACGGAGAAGTGGTTATGGTGCTATTGCGCGGAATGAGGGAGGGGAGATTATGTATGCTAT
TTCACAACCAATAGAATGGGTGGTAGATGCAGAACTGGTGGAAGCTTTAGCTATTCGTAATAGTGTAGAATTTGCTTTGGATATGGGATTTCACTTTATTGAGGTGGAGT
CCAATGCTCAAAGAGTTACTGGAATGTTAACTGGGAAAATTGATTGCAGAACAGAGGTGGAGCAAATTGTGGAGGAAACTAGAGTTCTTGCTCATTGTTTAAAGTCTGTC
AAATTTTCCTGGTGTCGACATCAAGCAAATAAACTAGCACATTTCCTTGCAAAATTGGCGGCCCTTGGAGAGAATGCGAACTGGTGGATGGAGGAGTGTCCTCCGTGTAT
GTTGGATATTTATCGCTCTAAATTGGGGATTGCGACGAGTCGTGTTGTGGGTGCTGCCAACCTCGATTTTCTTTAA
mRNA sequenceShow/hide mRNA sequence
ATGGCACCTTTTTACAAAATAAATACGGATGCGGCCACCAATATTAAGAGACGGAGAAGTGGTTATGGTGCTATTGCGCGGAATGAGGGAGGGGAGATTATGTATGCTAT
TTCACAACCAATAGAATGGGTGGTAGATGCAGAACTGGTGGAAGCTTTAGCTATTCGTAATAGTGTAGAATTTGCTTTGGATATGGGATTTCACTTTATTGAGGTGGAGT
CCAATGCTCAAAGAGTTACTGGAATGTTAACTGGGAAAATTGATTGCAGAACAGAGGTGGAGCAAATTGTGGAGGAAACTAGAGTTCTTGCTCATTGTTTAAAGTCTGTC
AAATTTTCCTGGTGTCGACATCAAGCAAATAAACTAGCACATTTCCTTGCAAAATTGGCGGCCCTTGGAGAGAATGCGAACTGGTGGATGGAGGAGTGTCCTCCGTGTAT
GTTGGATATTTATCGCTCTAAATTGGGGATTGCGACGAGTCGTGTTGTGGGTGCTGCCAACCTCGATTTTCTTTAA
Protein sequenceShow/hide protein sequence
MAPFYKINTDAATNIKRRRSGYGAIARNEGGEIMYAISQPIEWVVDAELVEALAIRNSVEFALDMGFHFIEVESNAQRVTGMLTGKIDCRTEVEQIVEETRVLAHCLKSV
KFSWCRHQANKLAHFLAKLAALGENANWWMEECPPCMLDIYRSKLGIATSRVVGAANLDFL