CuGenDBv2

Gene ID	Sed0016493
Organism	Sechium edule (Chayote v1)
Description	Actin-related protein 2/3 complex subunit 5
Genome location	LG03:4332368..4335012
RNA-Seq Expression	Sed0016493
Synteny	Sed0016493
Gene Ontology terms	GO:0030833 - regulation of actin filament polymerization (biological process) GO:0034314 - Arp2/3 complex-mediated actin nucleation (biological process) GO:0005737 - cytoplasm (cellular component) GO:0005885 - Arp2/3 protein complex (cellular component) GO:0051015 - actin filament binding (molecular function)
InterPro domains	IPR006789 - Actin-related protein 2/3 complex subunit 5 IPR036743 - Actin-related protein 2/3 complex subunit 5 superfamily

Homology

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GenBank top hits

e value

%identity

Alignment

MBA0743562.1 hypothetical protein [Gossypium gossypioides]

1.5e-34

65.19

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Query:  DEFEEADNGEAIITRIEHKSQKIETLLKQFKPMEALKTAISAARYLNFFFIFFFFMQSANWIVVHRALMAIKDVDGMFSSLDPEYYDNLMK---------
        ++F EADN EAIITRIEHKS+KIE+LLKQ KP+EALKTA+  + ++    I     +SANWIVVHRALMAIKDV+GMFSSLDPEYYD LMK         
Subjt:  DEFEEADNGEAIITRIEHKSQKIETLLKQFKPMEALKTAISAARYLNFFFIFFFFMQSANWIVVHRALMAIKDVDGMFSSLDPEYYDNLMK---------

Query:  ----------IHEKLTERAGLGCILRSLADTINTV
                  IHEKLTERAGLGCILRSLADT+NTV
Subjt:  ----------IHEKLTERAGLGCILRSLADTINTV

MBA0862528.1 hypothetical protein [Gossypium schwendimanii]

5.9e-34

64.44

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Query:  DEFEEADNGEAIITRIEHKSQKIETLLKQFKPMEALKTAISAARYLNFFFIFFFFMQSANWIVVHRALMAIKDVDGMFSSLDPEYYDNLMK---------
        ++F EADN EAIITRIEHKS+KIE+LLKQ KP+EALKTA+  + ++    +     +SANWIVVHRALMAIKDV+GMFSSLDPEYYD LMK         
Subjt:  DEFEEADNGEAIITRIEHKSQKIETLLKQFKPMEALKTAISAARYLNFFFIFFFFMQSANWIVVHRALMAIKDVDGMFSSLDPEYYDNLMK---------

Query:  ----------IHEKLTERAGLGCILRSLADTINTV
                  IHEKLTERAGLGCILRSLADT+NTV
Subjt:  ----------IHEKLTERAGLGCILRSLADTINTV

XP_012437529.1 PREDICTED: actin-related protein 2/3 complex subunit 5A-like [Gossypium raimondii]

3.4e-34

65.19

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Query:  DEFEEADNGEAIITRIEHKSQKIETLLKQFKPMEALKTAISAARYLNFFFIFFFFMQSANWIVVHRALMAIKDVDGMFSSLDPEYYDNLMK---------
        ++F EADN EAIITRIEHKS+KIE+LLKQ KP+EALKTA+  + ++    I     +SANWIVVHRALMAIKDV+GMFSSLDPEYYD LMK         
Subjt:  DEFEEADNGEAIITRIEHKSQKIETLLKQFKPMEALKTAISAARYLNFFFIFFFFMQSANWIVVHRALMAIKDVDGMFSSLDPEYYDNLMK---------

Query:  ----------IHEKLTERAGLGCILRSLADTINTV
                  IHEKLTERAGLGCILRSLADT+NTV
Subjt:  ----------IHEKLTERAGLGCILRSLADTINTV

XP_015889484.1 actin-related protein 2/3 complex subunit 5A [Ziziphus jujuba]

5.9e-34

65.67

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Query:  EFEEADNGEAIITRIEHKSQKIETLLKQFKPMEALKTAISAARYLNFFFIFFFFMQSANWIVVHRALMAIKDVDGMFSSLDPEYYDNLMK----------
        EF EADN EAIITRIEHKS+KIE+LLKQ+KP+EALKTA+  +             +SANWIVVHRA+MAIKDVDGMFSSLDPEYYD LMK          
Subjt:  EFEEADNGEAIITRIEHKSQKIETLLKQFKPMEALKTAISAARYLNFFFIFFFFMQSANWIVVHRALMAIKDVDGMFSSLDPEYYDNLMK----------

Query:  ---------IHEKLTERAGLGCILRSLADTINTV
                 IHEKLTERAGLGCILRSLADT+NTV
Subjt:  ---------IHEKLTERAGLGCILRSLADTINTV

XP_017640592.1 PREDICTED: actin-related protein 2/3 complex subunit 5A-like [Gossypium arboreum]

4.5e-34

64.44

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Query:  DEFEEADNGEAIITRIEHKSQKIETLLKQFKPMEALKTAISAARYLNFFFIFFFFMQSANWIVVHRALMAIKDVDGMFSSLDPEYYDNLMK---------
        ++F EADN EAIITRIEHKS+KIE+LLKQ KP+EALKTA+  + ++    I     +SANWIVVHRALMAIKDV+GMFSSLDPEYYD LMK         
Subjt:  DEFEEADNGEAIITRIEHKSQKIETLLKQFKPMEALKTAISAARYLNFFFIFFFFMQSANWIVVHRALMAIKDVDGMFSSLDPEYYDNLMK---------

Query:  ----------IHEKLTERAGLGCILRSLADTINTV
                  IHEKLTERAGLGCILRSLADT+NT+
Subjt:  ----------IHEKLTERAGLGCILRSLADTINTV

TrEMBL top hits

e value

%identity

Alignment

A0A0D2SYM5 Actin-related protein 2/3 complex subunit 5

1.7e-34

65.19

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Query:  DEFEEADNGEAIITRIEHKSQKIETLLKQFKPMEALKTAISAARYLNFFFIFFFFMQSANWIVVHRALMAIKDVDGMFSSLDPEYYDNLMK---------
        ++F EADN EAIITRIEHKS+KIE+LLKQ KP+EALKTA+  + ++    I     +SANWIVVHRALMAIKDV+GMFSSLDPEYYD LMK         
Subjt:  DEFEEADNGEAIITRIEHKSQKIETLLKQFKPMEALKTAISAARYLNFFFIFFFFMQSANWIVVHRALMAIKDVDGMFSSLDPEYYDNLMK---------

Query:  ----------IHEKLTERAGLGCILRSLADTINTV
                  IHEKLTERAGLGCILRSLADT+NTV
Subjt:  ----------IHEKLTERAGLGCILRSLADTINTV

A0A5D2A776 Actin-related protein 2/3 complex subunit 5

1.7e-34

65.19

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Query:  DEFEEADNGEAIITRIEHKSQKIETLLKQFKPMEALKTAISAARYLNFFFIFFFFMQSANWIVVHRALMAIKDVDGMFSSLDPEYYDNLMK---------
        ++F EADN EAIITRIEHKS+KIE+LLKQ KP+EALKTA+  + ++    I     +SANWIVVHRALMAIKDV+GMFSSLDPEYYD LMK         
Subjt:  DEFEEADNGEAIITRIEHKSQKIETLLKQFKPMEALKTAISAARYLNFFFIFFFFMQSANWIVVHRALMAIKDVDGMFSSLDPEYYDNLMK---------

Query:  ----------IHEKLTERAGLGCILRSLADTINTV
                  IHEKLTERAGLGCILRSLADT+NTV
Subjt:  ----------IHEKLTERAGLGCILRSLADTINTV

A0A5D2I8R5 Actin-related protein 2/3 complex subunit 5

1.7e-34

65.19

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Query:  DEFEEADNGEAIITRIEHKSQKIETLLKQFKPMEALKTAISAARYLNFFFIFFFFMQSANWIVVHRALMAIKDVDGMFSSLDPEYYDNLMK---------
        ++F EADN EAIITRIEHKS+KIE+LLKQ KP+EALKTA+  + ++    I     +SANWIVVHRALMAIKDV+GMFSSLDPEYYD LMK         
Subjt:  DEFEEADNGEAIITRIEHKSQKIETLLKQFKPMEALKTAISAARYLNFFFIFFFFMQSANWIVVHRALMAIKDVDGMFSSLDPEYYDNLMK---------

Query:  ----------IHEKLTERAGLGCILRSLADTINTV
                  IHEKLTERAGLGCILRSLADT+NTV
Subjt:  ----------IHEKLTERAGLGCILRSLADTINTV

A0A5J5NXR7 Actin-related protein 2/3 complex subunit 5

1.7e-34

65.19

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Query:  DEFEEADNGEAIITRIEHKSQKIETLLKQFKPMEALKTAISAARYLNFFFIFFFFMQSANWIVVHRALMAIKDVDGMFSSLDPEYYDNLMK---------
        ++F EADN EAIITRIEHKS+KIE+LLKQ KP+EALKTA+  + ++    I     +SANWIVVHRALMAIKDV+GMFSSLDPEYYD LMK         
Subjt:  DEFEEADNGEAIITRIEHKSQKIETLLKQFKPMEALKTAISAARYLNFFFIFFFFMQSANWIVVHRALMAIKDVDGMFSSLDPEYYDNLMK---------

Query:  ----------IHEKLTERAGLGCILRSLADTINTV
                  IHEKLTERAGLGCILRSLADT+NTV
Subjt:  ----------IHEKLTERAGLGCILRSLADTINTV

A0A7J9C4Z9 Actin-related protein 2/3 complex subunit 5

7.5e-35

65.19

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Query:  DEFEEADNGEAIITRIEHKSQKIETLLKQFKPMEALKTAISAARYLNFFFIFFFFMQSANWIVVHRALMAIKDVDGMFSSLDPEYYDNLMK---------
        ++F EADN EAIITRIEHKS+KIE+LLKQ KP+EALKTA+  + ++    I     +SANWIVVHRALMAIKDV+GMFSSLDPEYYD LMK         
Subjt:  DEFEEADNGEAIITRIEHKSQKIETLLKQFKPMEALKTAISAARYLNFFFIFFFFMQSANWIVVHRALMAIKDVDGMFSSLDPEYYDNLMK---------

Query:  ----------IHEKLTERAGLGCILRSLADTINTV
                  IHEKLTERAGLGCILRSLADT+NTV
Subjt:  ----------IHEKLTERAGLGCILRSLADTINTV

SwissProt top hits

e value

%identity

Alignment

B3H6Y2 Actin-related protein 2/3 complex subunit 5B

1.7e-28

56.3

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Query:  FEEADNGEAIITRIEHKSQKIETLLKQFKPMEALKTAI--SAARYLNFFFIFFFFMQSANWIVVHRALMAIKDVDGMFSSLDPEYYDNLMK---------
        F EADN E I+ RIE KSQKIE+LLK +K +EALKTA+  S  + L+         +SANWIVVHRA+MAIKD++GM +SL  EYYD LMK         
Subjt:  FEEADNGEAIITRIEHKSQKIETLLKQFKPMEALKTAI--SAARYLNFFFIFFFFMQSANWIVVHRALMAIKDVDGMFSSLDPEYYDNLMK---------

Query:  ----------IHEKLTERAGLGCILRSLADTINTV
                  IHEKLTERAGLGCILR L+DT NTV
Subjt:  ----------IHEKLTERAGLGCILRSLADTINTV

Q9M117 Actin-related protein 2/3 complex subunit 5A

6.3e-31

59.7

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Query:  EFEEADNGEAIITRIEHKSQKIETLLKQFKPMEALKTAISAARYLNFFFIFFFFMQSANWIVVHRALMAIKDVDGMFSSLDPEYYDNLM-----------
        EF EADN EAII RIE KS+KIE+LLKQ+K +EALKTA+  +             +SANWIVVHRALMAIKD+DGM ++LD EYYD LM           
Subjt:  EFEEADNGEAIITRIEHKSQKIETLLKQFKPMEALKTAISAARYLNFFFIFFFFMQSANWIVVHRALMAIKDVDGMFSSLDPEYYDNLM-----------

Query:  --------KIHEKLTERAGLGCILRSLADTINTV
                KIHEKLTERAGLGCILR L DTINTV
Subjt:  --------KIHEKLTERAGLGCILRSLADTINTV

Arabidopsis top hits

e value

%identity

Alignment

AT4G01710.1 ARP2/3 complex 16 kDa subunit (p16-Arc)

4.5e-32

59.7

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Query:  EFEEADNGEAIITRIEHKSQKIETLLKQFKPMEALKTAISAARYLNFFFIFFFFMQSANWIVVHRALMAIKDVDGMFSSLDPEYYDNLM-----------
        EF EADN EAII RIE KS+KIE+LLKQ+K +EALKTA+  +             +SANWIVVHRALMAIKD+DGM ++LD EYYD LM           
Subjt:  EFEEADNGEAIITRIEHKSQKIETLLKQFKPMEALKTAISAARYLNFFFIFFFFMQSANWIVVHRALMAIKDVDGMFSSLDPEYYDNLM-----------

Query:  --------KIHEKLTERAGLGCILRSLADTINTV
                KIHEKLTERAGLGCILR L DTINTV
Subjt:  --------KIHEKLTERAGLGCILRSLADTINTV

AT5G65274.1 ARP2/3 complex 16 kDa subunit (p16-Arc)

1.2e-29

56.3

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Query:  FEEADNGEAIITRIEHKSQKIETLLKQFKPMEALKTAI--SAARYLNFFFIFFFFMQSANWIVVHRALMAIKDVDGMFSSLDPEYYDNLMK---------
        F EADN E I+ RIE KSQKIE+LLK +K +EALKTA+  S  + L+         +SANWIVVHRA+MAIKD++GM +SL  EYYD LMK         
Subjt:  FEEADNGEAIITRIEHKSQKIETLLKQFKPMEALKTAI--SAARYLNFFFIFFFFMQSANWIVVHRALMAIKDVDGMFSSLDPEYYDNLMK---------

Query:  ----------IHEKLTERAGLGCILRSLADTINTV
                  IHEKLTERAGLGCILR L+DT NTV
Subjt:  ----------IHEKLTERAGLGCILRSLADTINTV

Sequences

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CDS sequence

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ATGGGAGATGAATTTGAGGAAGCAGATAATGGCGAAGCCATAATTACGAGAATCGAGCACAAATCTCAAAAGATCGAGACCTTACTTAAACAGTTTAAGCCAATGGAAGC
TCTAAAAACTGCAATCAGCGCTGCAAGGTATCTTAATTTTTTTTTTATTTTTTTTTTCTTTATGCAGTCTGCAAATTGGATTGTGGTGCATAGGGCTCTTATGGCTATAA
AGGATGTAGATGGGATGTTTTCTTCGTTGGATCCTGAGTACTATGATAATCTAATGAAGATACATGAAAAATTGACAGAAAGGGCTGGCTTAGGCTGCATTCTTCGTTCC
CTTGCAGATACCATCAACACAGTTTGA

mRNA sequence

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Protein sequence

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MGDEFEEADNGEAIITRIEHKSQKIETLLKQFKPMEALKTAISAARYLNFFFIFFFFMQSANWIVVHRALMAIKDVDGMFSSLDPEYYDNLMKIHEKLTERAGLGCILRS
LADTINTV

Sed0016493 (gene) of Chayote v1 genome