CuGenDBv2

Gene ID	Sed0016533
Organism	Sechium edule (Chayote v1)
Description	double-stranded RNA-binding protein 4-like isoform X1
Genome location	LG05:38512607..38516439
RNA-Seq Expression	Sed0016533
Synteny	Sed0016533
Gene Ontology terms	GO:0016075 - rRNA catabolic process (biological process) GO:0003723 - RNA binding (molecular function) GO:0004525 - ribonuclease III activity (molecular function)
InterPro domains	IPR011907 - Ribonuclease III IPR014720 - Double-stranded RNA-binding domain

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAG6581214.1 Double-stranded RNA-binding protein 4, partial [Cucurbita argyrosperma subsp. sororia]

2.1e-72

49.23

Show/hide

Query:  MVEDSGAVQAASQQQSLFAPDSAQPVVPA----DNSGTPHPKPGVDPPPVLPVPTLIASSVPAPVSSSNPSDSVEPFTYKVHLHEYTQKSRIPSPVYQTV
        MVE+SG V+A  QQQS F PDSA  VVPA    +NS TP  +    PPPVL    LI SS  APVSS  PSD  + F YK HLHE+TQKSRIP PVYQT 
Subjt:  MVEDSGAVQAASQQQSLFAPDSAQPVVPA----DNSGTPHPKPGVDPPPVLPVPTLIASSVPAPVSSSNPSDSVEPFTYKVHLHEYTQKSRIPSPVYQTV

Query:  NEGSPTAPKFRSTVLVDEVCYVSPNT---------------------------------------------------------------SLPILQSTLFL
        +EGS   PK+RSTV+VDEV YVSPNT                                                               S+PI QSTL  
Subjt:  NEGSPTAPKFRSTVLVDEVCYVSPNT---------------------------------------------------------------SLPILQSTLFL

Query:  NGIVYTGDVCKCKKEAEQLAGHAAILSLFGDAGNPKSQKTI-------------LQKVKDSNHSQTQSKPMPENTQEHVAMAIDKDKEVEDAIL------
        +G+VYTGD+ + KKEAEQLA  AAILSL  DAGNPKSQKT+             +QKVKDS+ SQ Q K MPENT EHV   +++DKEV  AIL      
Subjt:  NGIVYTGDVCKCKKEAEQLAGHAAILSLFGDAGNPKSQKTI-------------LQKVKDSNHSQTQSKPMPENTQEHVAMAIDKDKEVEDAIL------

Query:  -----VPPAMTHFRPEFRSTKLEPASSPVRLPIEFVPSTLEERIGDRATGSKRKSKNKKAQKARKKLCVENRVATTSSQLVPPCPVAQ
             + P ++H  PEFRS K   +S   RLPIE VPST EE +GDRATGSK++SKNK+  KARKKLC+EN+VAT +SQ   PC +AQ
Subjt:  -----VPPAMTHFRPEFRSTKLEPASSPVRLPIEFVPSTLEERIGDRATGSKRKSKNKKAQKARKKLCVENRVATTSSQLVPPCPVAQ

XP_022935532.1 double-stranded RNA-binding protein 4-like isoform X1 [Cucurbita moschata]

1.3e-74

49.74

Show/hide

Query:  MVEDSGAVQAASQQQSLFAPDSAQPVVPA----DNSGTPHPKPGVDPPPVLPVPTLIASSVPAPVSSSNPSDSVEPFTYKVHLHEYTQKSRIPSPVYQTV
        MVE+SG V+A  QQQS F PDSA  VVPA    +NS TP  +    PPPVLP   LI SS  APVSS  PSD  + F YK HLHEYTQKSRIP PVYQT 
Subjt:  MVEDSGAVQAASQQQSLFAPDSAQPVVPA----DNSGTPHPKPGVDPPPVLPVPTLIASSVPAPVSSSNPSDSVEPFTYKVHLHEYTQKSRIPSPVYQTV

Query:  NEGSPTAPKFRSTVLVDEVCYVSPNT---------------------------------------------------------------SLPILQSTLFL
        +EGS   PK+RSTV+VDEV YVSPNT                                                               S+PI QSTL  
Subjt:  NEGSPTAPKFRSTVLVDEVCYVSPNT---------------------------------------------------------------SLPILQSTLFL

Query:  NGIVYTGDVCKCKKEAEQLAGHAAILSLFGDAGNPKSQKTI-------------LQKVKDSNHSQTQSKPMPENTQEHVAMAIDKDKEVEDAIL------
        +G+VYTGD+ + KKEAEQLA  AAILSL  DAGNPKSQKT+             +QKVKDS+ SQ Q K MP+NT EHV   +++DKEV  AIL      
Subjt:  NGIVYTGDVCKCKKEAEQLAGHAAILSLFGDAGNPKSQKTI-------------LQKVKDSNHSQTQSKPMPENTQEHVAMAIDKDKEVEDAIL------

Query:  -----VPPAMTHFRPEFRSTKLEPASSPVRLPIEFVPSTLEERIGDRATGSKRKSKNKKAQKARKKLCVENRVATTSSQLVPPCPVAQ
             + P ++H  PEFRS K E +S   RLPIE VPST EE +GDRATGSK++SKNK+  KARKKLC+EN+VAT +SQ   PC +AQ
Subjt:  -----VPPAMTHFRPEFRSTKLEPASSPVRLPIEFVPSTLEERIGDRATGSKRKSKNKKAQKARKKLCVENRVATTSSQLVPPCPVAQ

XP_022935533.1 double-stranded RNA-binding protein 4-like isoform X2 [Cucurbita moschata]

1.3e-74

51.06

Show/hide

Query:  MVEDSGAVQAASQQQSLFAPDSAQPVVPA----DNSGTPHPKPGVDPPPVLPVPTLIASSVPAPVSSSNPSDSVEPFTYKVHLHEYTQKSRIPSPVYQTV
        MVE+SG V+A  QQQS F PDSA  VVPA    +NS TP  +    PPPVLP   LI SS  APVSS  PSD  + F YK HLHEYTQKSRIP PVYQT 
Subjt:  MVEDSGAVQAASQQQSLFAPDSAQPVVPA----DNSGTPHPKPGVDPPPVLPVPTLIASSVPAPVSSSNPSDSVEPFTYKVHLHEYTQKSRIPSPVYQTV

Query:  NEGSPTAPKFRSTVLVDEVCYVSPNT---------------------------------------------------------------SLPILQSTLFL
        +EGS   PK+RSTV+VDEV YVSPNT                                                               S+PI QSTL  
Subjt:  NEGSPTAPKFRSTVLVDEVCYVSPNT---------------------------------------------------------------SLPILQSTLFL

Query:  NGIVYTGDVCKCKKEAEQLAGHAAILSLFGDAGNPKSQKTI-------------LQKVKDSNHSQTQSKPMPENTQEHVAMAIDKDKEVEDAIL-VPPAM
        +G+VYTGD+ + KKEAEQLA  AAILSL  DAGNPKSQKT+             +QKVKDS+ SQ Q K MP+NT EHV   +++DKEV  AIL    A+
Subjt:  NGIVYTGDVCKCKKEAEQLAGHAAILSLFGDAGNPKSQKTI-------------LQKVKDSNHSQTQSKPMPENTQEHVAMAIDKDKEVEDAIL-VPPAM

Query:  THFRPEFRSTKLEPASSPVRLPIEFVPSTLEERIGDRATGSKRKSKNKKAQKARKKLCVENRVATTSSQLVPPCPVAQ
        +H  PEFRS K E +S   RLPIE VPST EE +GDRATGSK++SKNK+  KARKKLC+EN+VAT +SQ   PC +AQ
Subjt:  THFRPEFRSTKLEPASSPVRLPIEFVPSTLEERIGDRATGSKRKSKNKKAQKARKKLCVENRVATTSSQLVPPCPVAQ

XP_023526614.1 double-stranded RNA-binding protein 4-like isoform X1 [Cucurbita pepo subsp. pepo]

2.1e-72

50.4

Show/hide

Query:  MVEDSGAVQAASQQQSLFAPDSAQPVVPA----DNSGTPHPKPGVDPPPVLPVPTLIASSVPAPVSSSNPSDSVEPFTYKVHLHEYTQKSRIPSPVYQTV
        MVE+SG V+A  QQQS F PDSA  VVPA    +NS TP  +    PP VLP   LI S+  APVSS  PSD  + F YK HLHEYTQKSRIP PVYQT 
Subjt:  MVEDSGAVQAASQQQSLFAPDSAQPVVPA----DNSGTPHPKPGVDPPPVLPVPTLIASSVPAPVSSSNPSDSVEPFTYKVHLHEYTQKSRIPSPVYQTV

Query:  NEGSPTAPKFRSTVLVDEVCYVSPNT---------------------------------------------------------------SLPILQSTLFL
        +EGS   PK+RSTV+VDEV YVSPNT                                                               S+PI QSTL  
Subjt:  NEGSPTAPKFRSTVLVDEVCYVSPNT---------------------------------------------------------------SLPILQSTLFL

Query:  NGIVYTGDVCKCKKEAEQLAGHAAILSLFGDAGNPKSQKTI-------------LQKVKDSNHSQTQSKPMPENTQEHVAMAIDKDKEVEDAIL--VPPA
        +G+VYTGD+ + KKEAEQLA  AAILSL  DAGNPKSQKT+             +QKVKDS+ SQ Q K +PENT EHV   +++DKEV  AIL  V P 
Subjt:  NGIVYTGDVCKCKKEAEQLAGHAAILSLFGDAGNPKSQKTI-------------LQKVKDSNHSQTQSKPMPENTQEHVAMAIDKDKEVEDAIL--VPPA

Query:  MTHFRPEFRSTKLEPASSPVRLPIEFVPSTLEERIGDRATGSKRKSKNKKAQKARKKLCVENRVATTSSQLVPPCPVAQ
        ++H  PEFRS K   +S   RLPIE VPST EE +GDRATGSK++SKNK+  KARKKLC+EN+VAT +SQ   PC +AQ
Subjt:  MTHFRPEFRSTKLEPASSPVRLPIEFVPSTLEERIGDRATGSKRKSKNKKAQKARKKLCVENRVATTSSQLVPPCPVAQ

XP_038897078.1 double-stranded RNA-binding protein 8-like isoform X1 [Benincasa hispida]

5.4e-76

50.77

Show/hide

Query:  MVEDSGAVQAASQQQSLFAPDS----AQPVVPADNSGTPHPKPGVDPPPVLPVPTLIASSVPAPVSSSNPSDSVEPFTYKVHLHEYTQKSRIPSPVYQTV
        M+E+SG V+A + QQS F PDS      P VP  NS T  P+  + PP VLP   L+ S  PAPV S NPSD  +   YK HLHEYTQKSRI  PVYQT 
Subjt:  MVEDSGAVQAASQQQSLFAPDS----AQPVVPADNSGTPHPKPGVDPPPVLPVPTLIASSVPAPVSSSNPSDSVEPFTYKVHLHEYTQKSRIPSPVYQTV

Query:  NEGSPTAPKFRSTVLVDEVCYVSPNT---------------------------------------------------------------SLPILQSTLFL
        NEGS   PK+RSTV+VDEV YVSPNT                                                               S+P  QSTL  
Subjt:  NEGSPTAPKFRSTVLVDEVCYVSPNT---------------------------------------------------------------SLPILQSTLFL

Query:  NGIVYTGDVCKCKKEAEQLAGHAAILSLFGDAGNPKSQKTI-------------LQKVKDSNHSQTQSKPMPENTQEHVAMAIDKDKEVEDAIL------
        +G+VYT DV + KKEAEQLA  AAILSL GDA NPKSQKT+             LQKVKDS+ SQ Q K MPEN  EHVAM +D++KEV+DAIL      
Subjt:  NGIVYTGDVCKCKKEAEQLAGHAAILSLFGDAGNPKSQKTI-------------LQKVKDSNHSQTQSKPMPENTQEHVAMAIDKDKEVEDAIL------

Query:  -----VPPAMTHFRPEFRSTKLEPASSPVRLPIEFVPSTLEERIGD--RATGSKRKSKNKKAQKARKKLCVENRVATTSSQLVPPCPVAQ
             V P  +HFRPEFRSTK E +S PVRLPIEFVPSTLEE +GD  RATGSKR+SKNK+  KARKKLC+EN+V T +SQ   PC VAQ
Subjt:  -----VPPAMTHFRPEFRSTKLEPASSPVRLPIEFVPSTLEERIGD--RATGSKRKSKNKKAQKARKKLCVENRVATTSSQLVPPCPVAQ

TrEMBL top hits

e value

%identity

Alignment

A0A6J1F5U3 double-stranded RNA-binding protein 4-like isoform X1

6.4e-75

49.74

Show/hide

Query:  MVEDSGAVQAASQQQSLFAPDSAQPVVPA----DNSGTPHPKPGVDPPPVLPVPTLIASSVPAPVSSSNPSDSVEPFTYKVHLHEYTQKSRIPSPVYQTV
        MVE+SG V+A  QQQS F PDSA  VVPA    +NS TP  +    PPPVLP   LI SS  APVSS  PSD  + F YK HLHEYTQKSRIP PVYQT 
Subjt:  MVEDSGAVQAASQQQSLFAPDSAQPVVPA----DNSGTPHPKPGVDPPPVLPVPTLIASSVPAPVSSSNPSDSVEPFTYKVHLHEYTQKSRIPSPVYQTV

Query:  NEGSPTAPKFRSTVLVDEVCYVSPNT---------------------------------------------------------------SLPILQSTLFL
        +EGS   PK+RSTV+VDEV YVSPNT                                                               S+PI QSTL  
Subjt:  NEGSPTAPKFRSTVLVDEVCYVSPNT---------------------------------------------------------------SLPILQSTLFL

Query:  NGIVYTGDVCKCKKEAEQLAGHAAILSLFGDAGNPKSQKTI-------------LQKVKDSNHSQTQSKPMPENTQEHVAMAIDKDKEVEDAIL------
        +G+VYTGD+ + KKEAEQLA  AAILSL  DAGNPKSQKT+             +QKVKDS+ SQ Q K MP+NT EHV   +++DKEV  AIL      
Subjt:  NGIVYTGDVCKCKKEAEQLAGHAAILSLFGDAGNPKSQKTI-------------LQKVKDSNHSQTQSKPMPENTQEHVAMAIDKDKEVEDAIL------

Query:  -----VPPAMTHFRPEFRSTKLEPASSPVRLPIEFVPSTLEERIGDRATGSKRKSKNKKAQKARKKLCVENRVATTSSQLVPPCPVAQ
             + P ++H  PEFRS K E +S   RLPIE VPST EE +GDRATGSK++SKNK+  KARKKLC+EN+VAT +SQ   PC +AQ
Subjt:  -----VPPAMTHFRPEFRSTKLEPASSPVRLPIEFVPSTLEERIGDRATGSKRKSKNKKAQKARKKLCVENRVATTSSQLVPPCPVAQ

A0A6J1FAT0 double-stranded RNA-binding protein 4-like isoform X2

6.4e-75

51.06

Show/hide

Query:  MVEDSGAVQAASQQQSLFAPDSAQPVVPA----DNSGTPHPKPGVDPPPVLPVPTLIASSVPAPVSSSNPSDSVEPFTYKVHLHEYTQKSRIPSPVYQTV
        MVE+SG V+A  QQQS F PDSA  VVPA    +NS TP  +    PPPVLP   LI SS  APVSS  PSD  + F YK HLHEYTQKSRIP PVYQT 
Subjt:  MVEDSGAVQAASQQQSLFAPDSAQPVVPA----DNSGTPHPKPGVDPPPVLPVPTLIASSVPAPVSSSNPSDSVEPFTYKVHLHEYTQKSRIPSPVYQTV

Query:  NEGSPTAPKFRSTVLVDEVCYVSPNT---------------------------------------------------------------SLPILQSTLFL
        +EGS   PK+RSTV+VDEV YVSPNT                                                               S+PI QSTL  
Subjt:  NEGSPTAPKFRSTVLVDEVCYVSPNT---------------------------------------------------------------SLPILQSTLFL

Query:  NGIVYTGDVCKCKKEAEQLAGHAAILSLFGDAGNPKSQKTI-------------LQKVKDSNHSQTQSKPMPENTQEHVAMAIDKDKEVEDAIL-VPPAM
        +G+VYTGD+ + KKEAEQLA  AAILSL  DAGNPKSQKT+             +QKVKDS+ SQ Q K MP+NT EHV   +++DKEV  AIL    A+
Subjt:  NGIVYTGDVCKCKKEAEQLAGHAAILSLFGDAGNPKSQKTI-------------LQKVKDSNHSQTQSKPMPENTQEHVAMAIDKDKEVEDAIL-VPPAM

Query:  THFRPEFRSTKLEPASSPVRLPIEFVPSTLEERIGDRATGSKRKSKNKKAQKARKKLCVENRVATTSSQLVPPCPVAQ
        +H  PEFRS K E +S   RLPIE VPST EE +GDRATGSK++SKNK+  KARKKLC+EN+VAT +SQ   PC +AQ
Subjt:  THFRPEFRSTKLEPASSPVRLPIEFVPSTLEERIGDRATGSKRKSKNKKAQKARKKLCVENRVATTSSQLVPPCPVAQ

A0A6J1J1D4 double-stranded RNA-binding protein 4-like isoform X2

1.6e-70

49.87

Show/hide

Query:  MVEDSGAVQAASQQQSLFAPDSAQPVVPA----DNSGTPHPKPGVDPPPVLPVPTLIASSVPAPVSSSNPSDSVEPFTYKVHLHEYTQKSRIPSPVYQTV
        MVE+SG V+A  QQQS F PDSA  VVPA    ++S TP  +    PPPVLP   LI SS  APVSS  PSD  + F YK HLHEYTQKSRIP PVYQT 
Subjt:  MVEDSGAVQAASQQQSLFAPDSAQPVVPA----DNSGTPHPKPGVDPPPVLPVPTLIASSVPAPVSSSNPSDSVEPFTYKVHLHEYTQKSRIPSPVYQTV

Query:  NEGSPTAPKFRSTVLVDEVCYVSPNT---------------------------------------------------------------SLPILQSTLFL
        +EGS   PK+RSTV+VDEV YVSPNT                                                               S+PI QSTL  
Subjt:  NEGSPTAPKFRSTVLVDEVCYVSPNT---------------------------------------------------------------SLPILQSTLFL

Query:  NGIVYTGDVCKCKKEAEQLAGHAAILSLFGDAGNPKSQKTI-------------LQKVKDSNHSQTQSKPMPENTQEHVAMAIDKDKEVEDAIL-VPPAM
        +G+VYTGD+ + KKEAEQLA  AAILSL  DAGNPKSQKT+             +QKVKDS+ SQ Q K MPENT EHV   +++DKEV  AIL    A+
Subjt:  NGIVYTGDVCKCKKEAEQLAGHAAILSLFGDAGNPKSQKTI-------------LQKVKDSNHSQTQSKPMPENTQEHVAMAIDKDKEVEDAIL-VPPAM

Query:  THFRPEFRSTKLEPASSPVRLPIEFVPSTLEERIGDRATGSKRKSKNKKAQKARKKLCVENRVATTSSQLV
        +H  PE RS K   +S   RLPIE VPST EE +GDRATG+K++SKNK+  KARKKLC+EN+VAT   +L+
Subjt:  THFRPEFRSTKLEPASSPVRLPIEFVPSTLEERIGDRATGSKRKSKNKKAQKARKKLCVENRVATTSSQLV

A0A6J1J4E3 double-stranded RNA-binding protein 4-like isoform X1

1.6e-70

48.56

Show/hide

Query:  MVEDSGAVQAASQQQSLFAPDSAQPVVPA----DNSGTPHPKPGVDPPPVLPVPTLIASSVPAPVSSSNPSDSVEPFTYKVHLHEYTQKSRIPSPVYQTV
        MVE+SG V+A  QQQS F PDSA  VVPA    ++S TP  +    PPPVLP   LI SS  APVSS  PSD  + F YK HLHEYTQKSRIP PVYQT 
Subjt:  MVEDSGAVQAASQQQSLFAPDSAQPVVPA----DNSGTPHPKPGVDPPPVLPVPTLIASSVPAPVSSSNPSDSVEPFTYKVHLHEYTQKSRIPSPVYQTV

Query:  NEGSPTAPKFRSTVLVDEVCYVSPNT---------------------------------------------------------------SLPILQSTLFL
        +EGS   PK+RSTV+VDEV YVSPNT                                                               S+PI QSTL  
Subjt:  NEGSPTAPKFRSTVLVDEVCYVSPNT---------------------------------------------------------------SLPILQSTLFL

Query:  NGIVYTGDVCKCKKEAEQLAGHAAILSLFGDAGNPKSQKTI-------------LQKVKDSNHSQTQSKPMPENTQEHVAMAIDKDKEVEDAIL------
        +G+VYTGD+ + KKEAEQLA  AAILSL  DAGNPKSQKT+             +QKVKDS+ SQ Q K MPENT EHV   +++DKEV  AIL      
Subjt:  NGIVYTGDVCKCKKEAEQLAGHAAILSLFGDAGNPKSQKTI-------------LQKVKDSNHSQTQSKPMPENTQEHVAMAIDKDKEVEDAIL------

Query:  -----VPPAMTHFRPEFRSTKLEPASSPVRLPIEFVPSTLEERIGDRATGSKRKSKNKKAQKARKKLCVENRVATTSSQLV
             + P ++H  PE RS K   +S   RLPIE VPST EE +GDRATG+K++SKNK+  KARKKLC+EN+VAT   +L+
Subjt:  -----VPPAMTHFRPEFRSTKLEPASSPVRLPIEFVPSTLEERIGDRATGSKRKSKNKKAQKARKKLCVENRVATTSSQLV

A0A6J1J9P9 double-stranded RNA-binding protein 4-like isoform X3

5.3e-69

48.66

Show/hide

Query:  MVEDSGAVQAASQQQSLFAPDSAQPVVPA----DNSGTPHPKPGVDPPPVLPVPTLIASSVPAPVSSSNPSDSVEPFTYKVHLHEYTQKSRIPSPVYQTV
        MVE+SG V+A  QQQS F PDSA  VVPA    ++S TP  +    PPPVLP   LI SS  APVSS  PSD  + F YK HLHEYTQKSRIP PVYQT 
Subjt:  MVEDSGAVQAASQQQSLFAPDSAQPVVPA----DNSGTPHPKPGVDPPPVLPVPTLIASSVPAPVSSSNPSDSVEPFTYKVHLHEYTQKSRIPSPVYQTV

Query:  NEGSPTAPKFRSTVLVDEVCYVSPNT---------------------------------------------------------------SLPILQSTLFL
        +EGS   PK+RSTV+VDEV YVSPNT                                                               S+PI QSTL  
Subjt:  NEGSPTAPKFRSTVLVDEVCYVSPNT---------------------------------------------------------------SLPILQSTLFL

Query:  NGIVYTGDVCKCKKEAEQLAGHAAILSLFGDAGNPKSQKTI-------------LQKVKDSNHSQTQSKPMPENTQEHVAMAIDKDKEVEDAIL------
        +G+VYTGD+ + KKEAEQLA  AAILSL  DAGNPKSQKT+             +QKVKDS+ SQ Q K MPENT EHV   +++DKEV  AIL      
Subjt:  NGIVYTGDVCKCKKEAEQLAGHAAILSLFGDAGNPKSQKTI-------------LQKVKDSNHSQTQSKPMPENTQEHVAMAIDKDKEVEDAIL------

Query:  -----VPPAMTHFRPEFRSTKLEPASSPVRLPIEFVPSTLEERIGDRATGSKRKSKNKKAQKARKKLCVENR
             + P ++H  PE RS K   +S   RLPIE VPST EE +GDRATG+K++SKNK+  KARKKLC+EN+
Subjt:  -----VPPAMTHFRPEFRSTKLEPASSPVRLPIEFVPSTLEERIGDRATGSKRKSKNKKAQKARKKLCVENR

SwissProt top hits

e value

%identity

Alignment

Q0DJA3 Double-stranded RNA-binding protein 3

4.4e-04

27.52

Show/hide

Query:  PVPTLIASSVPAPVSSSNPSDSVEPFTYKVHLHEYTQKSRIPSPVYQTVNEGSPTAPKFRSTVLVDEVCYVSPNTSLPILQSTLFLNGIVYTGDVCKCKK
        P+P   A++ PAP+ ++        + +K  L EY QK+ + +P Y T  EG    P F+STV+++   Y     SLP   +                +K
Subjt:  PVPTLIASSVPAPVSSSNPSDSVEPFTYKVHLHEYTQKSRIPSPVYQTVNEGSPTAPKFRSTVLVDEVCYVSPNTSLPILQSTLFLNGIVYTGDVCKCKK

Query:  EAEQLAGHAAIL----SLFGDAGNPKSQKTILQKVKDSNHSQTQSKPMP
         AEQ A   A++    S+  +A  P  Q+T L K     ++Q  +  +P
Subjt:  EAEQLAGHAAIL----SLFGDAGNPKSQKTILQKVKDSNHSQTQSKPMP

Arabidopsis top hits

e value

%identity

Alignment

AT1G09700.1 dsRNA-binding domain-like superfamily protein

1.2e-04

23.17

Show/hide

Query:  FTYKVHLHEYTQKSRIPSPVYQTVNEGSPTAPKFRSTVLVDEVCYVS----------------------------------------------------P
        + +K  L EY QK ++P+PVY+ V EG      F+STV++D V Y S                                                     
Subjt:  FTYKVHLHEYTQKSRIPSPVYQTVNEGSPTAPKFRSTVLVDEVCYVS----------------------------------------------------P

Query:  NTSLPILQ--------------STLFLNGIVYTGDVCKCKKEAEQLAGHAAILSLFGDAGN------------PKSQKTI------LQKVKDSNHSQTQS
        N ++P+ Q               T+ + GI YTG   + KK+AE  AG  A+L++  D  N            P  +KTI       + VK     + Q 
Subjt:  NTSLPILQ--------------STLFLNGIVYTGDVCKCKKEAEQLAGHAAILSLFGDAGN------------PKSQKTI------LQKVKDSNHSQTQS

Query:  KPMPENTQEHVAMAIDKDKEVEDAILVPPAMTHFRPEFRSTKLEPASSPVRLPIEFVPSTLEERIGDRATGSKRKSKNKKAQKARKKLC-----------
        K   +  +  VA      K  ED I++PP  T      +S K+E   +         PS+    + + A GS    K +         C           
Subjt:  KPMPENTQEHVAMAIDKDKEVEDAILVPPAMTHFRPEFRSTKLEPASSPVRLPIEFVPSTLEERIGDRATGSKRKSKNKKAQKARKKLC-----------

Query:  VENRVATTSSQLVPP
        VE     T+  L PP
Subjt:  VENRVATTSSQLVPP

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGGTGGAAGATTCCGGTGCAGTGCAAGCAGCTTCTCAGCAGCAATCCTTGTTCGCACCGGACTCGGCTCAGCCTGTTGTTCCGGCGGATAACTCCGGCACTCCTCACCC
TAAACCGGGTGTCGATCCTCCACCTGTTTTACCGGTCCCAACCCTAATTGCGAGTTCCGTTCCAGCGCCGGTTTCTTCTTCGAATCCCTCCGATTCGGTTGAACCCTTCA
CATACAAAGTGCATTTGCATGAATACACTCAAAAGTCAAGGATCCCATCACCAGTATATCAGACAGTTAATGAAGGATCCCCAACTGCACCTAAATTTAGGTCAACTGTC
TTGGTTGATGAGGTATGTTATGTGTCTCCTAATACCTCACTTCCAATTTTACAATCGACCTTGTTTTTGAATGGTATCGTTTATACTGGCGATGTTTGCAAGTGTAAGAA
AGAGGCAGAGCAATTGGCAGGACATGCTGCTATTCTTTCACTTTTTGGAGATGCAGGAAATCCAAAGTCACAAAAAACTATTTTGCAAAAGGTTAAAGATTCGAATCATT
CTCAAACTCAATCCAAACCCATGCCTGAAAATACTCAGGAGCATGTTGCAATGGCAATCGATAAAGATAAAGAAGTCGAAGATGCCATTTTGGTTCCTCCAGCAATGACT
CATTTTCGGCCTGAATTTAGATCAACAAAATTGGAACCAGCATCGTCTCCAGTGAGACTTCCAATAGAATTTGTGCCTTCAACTTTAGAGGAGCGTATAGGTGATCGTGC
AACTGGGTCTAAAAGGAAGTCTAAGAACAAGAAGGCACAGAAGGCACGTAAGAAACTGTGTGTGGAGAACCGGGTGGCAACCACGTCGAGTCAACTCGTGCCTCCTTGCC
CCGTAGCTCAATGA

mRNA sequence

Show/hide mRNA sequence

Protein sequence

Show/hide protein sequence

MVEDSGAVQAASQQQSLFAPDSAQPVVPADNSGTPHPKPGVDPPPVLPVPTLIASSVPAPVSSSNPSDSVEPFTYKVHLHEYTQKSRIPSPVYQTVNEGSPTAPKFRSTV
LVDEVCYVSPNTSLPILQSTLFLNGIVYTGDVCKCKKEAEQLAGHAAILSLFGDAGNPKSQKTILQKVKDSNHSQTQSKPMPENTQEHVAMAIDKDKEVEDAILVPPAMT
HFRPEFRSTKLEPASSPVRLPIEFVPSTLEERIGDRATGSKRKSKNKKAQKARKKLCVENRVATTSSQLVPPCPVAQ

Sed0016533 (gene) of Chayote v1 genome