; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Sed0016538 (gene) of Chayote v1 genome

Gene IDSed0016538
OrganismSechium edule (Chayote v1)
Descriptionglycine-rich cell wall structural protein 1.0-like
Genome locationLG03:18161236..18161864
RNA-Seq ExpressionSed0016538
SyntenySed0016538
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6595345.1 hypothetical protein SDJN03_11898, partial [Cucurbita argyrosperma subsp. sororia]2.0e-3758.08Show/hide
Query:  MVRTAYIVSPILGAFITCVVMFLLCLFCGRKASK------EKVSSHRQDGNRIGIVVDDGSYMGTST--TTAYGGWGWDWTFSTVREDAGSDNGNGNPDV
        MVRTAYIV PI+GAFI   VM L CL C R+ SK       K  S+ + GNRIGIVVDDGSY+GT+      YGGWGWDWTFS+V  D G+ NGNG    
Subjt:  MVRTAYIVSPILGAFITCVVMFLLCLFCGRKASK------EKVSSHRQDGNRIGIVVDDGSYMGTST--TTAYGGWGWDWTFSTVREDAGSDNGNGNPDV

Query:  GVGSGGGGDCDAAGDGAGCGNG-GLSTGIGDNGGSRMSFHD---GVGGEASSCDRGGGEGEGGGVSDHGGGVSFHVDGGGYSFGGGGVSSHDQGGGGASY
         VG GGGGD +  G G+  G G G+  G GD  G+  SFH+   G GG ASS D  G  G GG VSDHGGG SFH+DGG  +F GGGVSSH  GGGGASY
Subjt:  GVGSGGGGDCDAAGDGAGCGNG-GLSTGIGDNGGSRMSFHD---GVGGEASSCDRGGGEGEGGGVSDHGGGVSFHVDGGGYSFGGGGVSSHDQGGGGASY

Query:  DH---------GGGAGGCDFGGGGGSSFW
        DH         GGG GG DFGG GGSSFW
Subjt:  DH---------GGGAGGCDFGGGGGSSFW

XP_008450026.1 PREDICTED: glycine-rich cell wall structural protein 1.0-like [Cucumis melo]8.5e-1245.98Show/hide
Query:  SHRQDGNRIGIVVDDGSYMGTS----TTTAYGGWGWDWTFSTVREDAGSDNGNGNPDVGVGSGGGGDCDAAGDGAGCGNGGLSTGIGDNGGSRMSFHDGV
        S R+D  +IGI ++ G+   T     T T+YGGWGWDWTFSTV +    + G  + +VG G+G          G   GNGG        GGS +S H+  
Subjt:  SHRQDGNRIGIVVDDGSYMGTS----TTTAYGGWGWDWTFSTVREDAGSDNGNGNPDVGVGSGGGGDCDAAGDGAGCGNGGLSTGIGDNGGSRMSFHDGV

Query:  GGEASSCDRGGGEGEGGGVSDHGGGVSFHVDGGGYSFGGGGVSSHDQGGGGASYDHGGGAGGCDFGGGGGSSFW
            + C  GGG+  G GVS+HG GVS HVD GG+S+GGGG SS+D GGGG+     GG G  DF GGGGSS W
Subjt:  GGEASSCDRGGGEGEGGGVSDHGGGVSFHVDGGGYSFGGGGVSSHDQGGGGASYDHGGGAGGCDFGGGGGSSFW

XP_022931867.1 glycine-rich protein 23-like [Cucurbita moschata]2.4e-3858.52Show/hide
Query:  MVRTAYIVSPILGAFITCVVMFLLCLFCGRKASK------EKVSSHRQDGNRIGIVVDDGSYMGTST--TTAYGGWGWDWTFSTVREDAGSDNGNGNPDV
        MVRTAYIV PI+GAFI C VM L CL C R+ SK       K  S+ + GNRIGIVVDDGSY+GT+      YGGWGWDWTFS+V  D G+ NGNG    
Subjt:  MVRTAYIVSPILGAFITCVVMFLLCLFCGRKASK------EKVSSHRQDGNRIGIVVDDGSYMGTST--TTAYGGWGWDWTFSTVREDAGSDNGNGNPDV

Query:  GVGSGGGGDCDAAGDGAGCGNG-GLSTGIGDNGGSRMSFHD---GVGGEASSCDRGGGEGEGGGVSDHGGGVSFHVDGGGYSFGGGGVSSHDQGGGGASY
         VG GGGGD +  G G+  G G G+  G GD  G+  SFH+   G GG ASS D  G  G GG VSD GGG SFH+DGG  +F GGGVSSH  GGGGASY
Subjt:  GVGSGGGGDCDAAGDGAGCGNG-GLSTGIGDNGGSRMSFHD---GVGGEASSCDRGGGEGEGGGVSDHGGGVSFHVDGGGYSFGGGGVSSHDQGGGGASY

Query:  DH---------GGGAGGCDFGGGGGSSFW
        DH         GGG GG DFGGGGGSSFW
Subjt:  DH---------GGGAGGCDFGGGGGSSFW

XP_022966633.1 loricrin-like [Cucurbita maxima]3.8e-2853.88Show/hide
Query:  MFLLCLFCGRKASK------EKVSSHRQDGNRIGIVVDDGSYMGTST--TTAYGGWGWDWTFSTVREDAGSDNGNGNPDVGVGSGGGGDCDAAGDGAGCG
        M L CL C R+ SK       K  S+ + GNRIGIVVDDGSY+GT+      YGGWGWDWTFS+V  D G+ N  G  DVG   GGGGD +  G G+  G
Subjt:  MFLLCLFCGRKASK------EKVSSHRQDGNRIGIVVDDGSYMGTST--TTAYGGWGWDWTFSTVREDAGSDNGNGNPDVGVGSGGGGDCDAAGDGAGCG

Query:  NG-GLSTGIGDNGGSRMSFHD---GVGGEASSCDRGGGEGEGGGVSDHGGGVSFHVDGGGYSFGGGGVS--------SHDQ--GGGGASYDH--------
         G G+  G GD  G+  SFH+   G GG ASS D  G  G GG VSDHGGG SFH+DGG  +FGGG  S        SHD   GGGGASYDH        
Subjt:  NG-GLSTGIGDNGGSRMSFHD---GVGGEASSCDRGGGEGEGGGVSDHGGGVSFHVDGGGYSFGGGGVS--------SHDQ--GGGGASYDH--------

Query:  -GGGAGGCDFGGGGGSSFW
         GGG GG DFGGGGGSSFW
Subjt:  -GGGAGGCDFGGGGGSSFW

XP_023518097.1 glycine-rich protein 5-like [Cucurbita pepo subsp. pepo]1.0e-2853.18Show/hide
Query:  MFLLCLFCGRKASK------EKVSSHRQDGNRIGIVVDDGSYMGTST--TTAYGGWGWDWTFSTVREDAGSDNGNGNPDVGVGSGGGGDCDAAGDGAGCG
        M L CL C R+ SK       K  S  + GNR+GIVVDDGSY+GT+      YGGWGWDWTFS+V  D+G+ NGNG     VG GGGGD +  G G   G
Subjt:  MFLLCLFCGRKASK------EKVSSHRQDGNRIGIVVDDGSYMGTST--TTAYGGWGWDWTFSTVREDAGSDNGNGNPDVGVGSGGGGDCDAAGDGAGCG

Query:  NG-GLSTGIGDNGGSRMSFHD---GVGGEASSCDRGGGEGEGGGVSDHGGGVSFHVDGGGYSFGGGGVSSHDQGGGGASYDHGGGAGGC-----------
         G G+  G GD  G+  SFH+   G GG ASS D  G  G GG VSDHGGG SFH+DGG  +F GGGVSSH  GGGGA+YDHGGG GG            
Subjt:  NG-GLSTGIGDNGGSRMSFHD---GVGGEASSCDRGGGEGEGGGVSDHGGGVSFHVDGGGYSFGGGGVSSHDQGGGGASYDHGGGAGGC-----------

Query:  ---------DFGGGGGSSFW
                 DFGGGGGSSFW
Subjt:  ---------DFGGGGGSSFW

TrEMBL top hitse value%identityAlignment
A0A0A0KXB6 Uncharacterized protein2.6e-1446.95Show/hide
Query:  GIVVDDGSYMGTSTT-------TAYGGWGWDWTFSTVREDAGSDNGNGNPDVGVGSGGGGDCDAAGDGAGCGNGGLSTGIGDNGGSRMSFHDGVGGEASS
        GI V+ G+   TSTT       ++YGGWGWDWTFSTV +     +G  + +VG G+GG                   TG G  GGS  S H+        
Subjt:  GIVVDDGSYMGTSTT-------TAYGGWGWDWTFSTVREDAGSDNGNGNPDVGVGSGGGGDCDAAGDGAGCGNGGLSTGIGDNGGSRMSFHDGVGGEASS

Query:  CDRGGGEGEGGGVSDHGGGVSFHVDGGGYSFGGGGVSSHDQGGGGASYDHGGGAGGCDFGGGGG
         D G G+  GGGVSDHG GVS HVDGGG+S+GGGG SS+D+GGGG     GGG GG   GGGGG
Subjt:  CDRGGGEGEGGGVSDHGGGVSFHVDGGGYSFGGGGVSSHDQGGGGASYDHGGGAGGCDFGGGGG

A0A1S3BNC1 glycine-rich cell wall structural protein 1.0-like4.1e-1245.98Show/hide
Query:  SHRQDGNRIGIVVDDGSYMGTS----TTTAYGGWGWDWTFSTVREDAGSDNGNGNPDVGVGSGGGGDCDAAGDGAGCGNGGLSTGIGDNGGSRMSFHDGV
        S R+D  +IGI ++ G+   T     T T+YGGWGWDWTFSTV +    + G  + +VG G+G          G   GNGG        GGS +S H+  
Subjt:  SHRQDGNRIGIVVDDGSYMGTS----TTTAYGGWGWDWTFSTVREDAGSDNGNGNPDVGVGSGGGGDCDAAGDGAGCGNGGLSTGIGDNGGSRMSFHDGV

Query:  GGEASSCDRGGGEGEGGGVSDHGGGVSFHVDGGGYSFGGGGVSSHDQGGGGASYDHGGGAGGCDFGGGGGSSFW
            + C  GGG+  G GVS+HG GVS HVD GG+S+GGGG SS+D GGGG+     GG G  DF GGGGSS W
Subjt:  GGEASSCDRGGGEGEGGGVSDHGGGVSFHVDGGGYSFGGGGVSSHDQGGGGASYDHGGGAGGCDFGGGGGSSFW

A0A5A7TNP5 Glycine-rich cell wall structural protein 1.0-like4.1e-1245.98Show/hide
Query:  SHRQDGNRIGIVVDDGSYMGTS----TTTAYGGWGWDWTFSTVREDAGSDNGNGNPDVGVGSGGGGDCDAAGDGAGCGNGGLSTGIGDNGGSRMSFHDGV
        S R+D  +IGI ++ G+   T     T T+YGGWGWDWTFSTV +    + G  + +VG G+G          G   GNGG        GGS +S H+  
Subjt:  SHRQDGNRIGIVVDDGSYMGTS----TTTAYGGWGWDWTFSTVREDAGSDNGNGNPDVGVGSGGGGDCDAAGDGAGCGNGGLSTGIGDNGGSRMSFHDGV

Query:  GGEASSCDRGGGEGEGGGVSDHGGGVSFHVDGGGYSFGGGGVSSHDQGGGGASYDHGGGAGGCDFGGGGGSSFW
            + C  GGG+  G GVS+HG GVS HVD GG+S+GGGG SS+D GGGG+     GG G  DF GGGGSS W
Subjt:  GGEASSCDRGGGEGEGGGVSDHGGGVSFHVDGGGYSFGGGGVSSHDQGGGGASYDHGGGAGGCDFGGGGGSSFW

A0A6J1EUX9 glycine-rich protein 23-like1.2e-3858.52Show/hide
Query:  MVRTAYIVSPILGAFITCVVMFLLCLFCGRKASK------EKVSSHRQDGNRIGIVVDDGSYMGTST--TTAYGGWGWDWTFSTVREDAGSDNGNGNPDV
        MVRTAYIV PI+GAFI C VM L CL C R+ SK       K  S+ + GNRIGIVVDDGSY+GT+      YGGWGWDWTFS+V  D G+ NGNG    
Subjt:  MVRTAYIVSPILGAFITCVVMFLLCLFCGRKASK------EKVSSHRQDGNRIGIVVDDGSYMGTST--TTAYGGWGWDWTFSTVREDAGSDNGNGNPDV

Query:  GVGSGGGGDCDAAGDGAGCGNG-GLSTGIGDNGGSRMSFHD---GVGGEASSCDRGGGEGEGGGVSDHGGGVSFHVDGGGYSFGGGGVSSHDQGGGGASY
         VG GGGGD +  G G+  G G G+  G GD  G+  SFH+   G GG ASS D  G  G GG VSD GGG SFH+DGG  +F GGGVSSH  GGGGASY
Subjt:  GVGSGGGGDCDAAGDGAGCGNG-GLSTGIGDNGGSRMSFHD---GVGGEASSCDRGGGEGEGGGVSDHGGGVSFHVDGGGYSFGGGGVSSHDQGGGGASY

Query:  DH---------GGGAGGCDFGGGGGSSFW
        DH         GGG GG DFGGGGGSSFW
Subjt:  DH---------GGGAGGCDFGGGGGSSFW

A0A6J1HSN5 loricrin-like1.8e-2853.88Show/hide
Query:  MFLLCLFCGRKASK------EKVSSHRQDGNRIGIVVDDGSYMGTST--TTAYGGWGWDWTFSTVREDAGSDNGNGNPDVGVGSGGGGDCDAAGDGAGCG
        M L CL C R+ SK       K  S+ + GNRIGIVVDDGSY+GT+      YGGWGWDWTFS+V  D G+ N  G  DVG   GGGGD +  G G+  G
Subjt:  MFLLCLFCGRKASK------EKVSSHRQDGNRIGIVVDDGSYMGTST--TTAYGGWGWDWTFSTVREDAGSDNGNGNPDVGVGSGGGGDCDAAGDGAGCG

Query:  NG-GLSTGIGDNGGSRMSFHD---GVGGEASSCDRGGGEGEGGGVSDHGGGVSFHVDGGGYSFGGGGVS--------SHDQ--GGGGASYDH--------
         G G+  G GD  G+  SFH+   G GG ASS D  G  G GG VSDHGGG SFH+DGG  +FGGG  S        SHD   GGGGASYDH        
Subjt:  NG-GLSTGIGDNGGSRMSFHD---GVGGEASSCDRGGGEGEGGGVSDHGGGVSFHVDGGGYSFGGGGVS--------SHDQ--GGGGASYDH--------

Query:  -GGGAGGCDFGGGGGSSFW
         GGG GG DFGGGGGSSFW
Subjt:  -GGGAGGCDFGGGGGSSFW

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTTAGAACCGCATACATAGTGTCACCCATTCTTGGGGCTTTCATTACTTGTGTTGTTATGTTTCTGTTGTGTTTGTTTTGCGGGAGGAAAGCTTCGAAAGAAAAAGT
TAGCAGCCACAGACAAGATGGAAATAGAATTGGCATAGTTGTGGATGATGGGAGCTATATGGGTACAAGTACAACCACAGCCTATGGAGGTTGGGGTTGGGATTGGACTT
TTAGTACTGTACGAGAAGATGCTGGCAGCGACAACGGCAACGGCAACCCAGATGTCGGAGTCGGCAGTGGAGGTGGTGGGGATTGTGATGCTGCAGGTGATGGAGCTGGG
TGTGGAAATGGTGGCCTTAGCACAGGAATAGGTGATAATGGAGGCAGTAGAATGAGCTTTCACGACGGCGTAGGCGGTGAAGCGAGTTCTTGCGACCGAGGTGGGGGTGA
AGGTGAGGGTGGAGGGGTTTCTGATCATGGAGGTGGTGTGAGTTTTCATGTGGATGGAGGGGGCTATAGTTTCGGAGGTGGAGGGGTGAGTTCTCACGACCAAGGTGGTG
GCGGAGCGAGTTACGATCATGGCGGAGGGGCAGGGGGCTGTGATTTTGGAGGGGGTGGAGGCTCATCTTTTTGGTGA
mRNA sequenceShow/hide mRNA sequence
ATATGGTTAGAACCGCATACATAGTGTCACCCATTCTTGGGGCTTTCATTACTTGTGTTGTTATGTTTCTGTTGTGTTTGTTTTGCGGGAGGAAAGCTTCGAAAGAAAAA
GTTAGCAGCCACAGACAAGATGGAAATAGAATTGGCATAGTTGTGGATGATGGGAGCTATATGGGTACAAGTACAACCACAGCCTATGGAGGTTGGGGTTGGGATTGGAC
TTTTAGTACTGTACGAGAAGATGCTGGCAGCGACAACGGCAACGGCAACCCAGATGTCGGAGTCGGCAGTGGAGGTGGTGGGGATTGTGATGCTGCAGGTGATGGAGCTG
GGTGTGGAAATGGTGGCCTTAGCACAGGAATAGGTGATAATGGAGGCAGTAGAATGAGCTTTCACGACGGCGTAGGCGGTGAAGCGAGTTCTTGCGACCGAGGTGGGGGT
GAAGGTGAGGGTGGAGGGGTTTCTGATCATGGAGGTGGTGTGAGTTTTCATGTGGATGGAGGGGGCTATAGTTTCGGAGGTGGAGGGGTGAGTTCTCACGACCAAGGTGG
TGGCGGAGCGAGTTACGATCATGGCGGAGGGGCAGGGGGCTGTGATTTTGGAGGGGGTGGAGGCTCATCTTTTTGGTGA
Protein sequenceShow/hide protein sequence
MVRTAYIVSPILGAFITCVVMFLLCLFCGRKASKEKVSSHRQDGNRIGIVVDDGSYMGTSTTTAYGGWGWDWTFSTVREDAGSDNGNGNPDVGVGSGGGGDCDAAGDGAG
CGNGGLSTGIGDNGGSRMSFHDGVGGEASSCDRGGGEGEGGGVSDHGGGVSFHVDGGGYSFGGGGVSSHDQGGGGASYDHGGGAGGCDFGGGGGSSFW