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Sed0016546 (gene) of Chayote v1 genome

Gene IDSed0016546
OrganismSechium edule (Chayote v1)
DescriptionRING-H2 finger protein ATL56
Genome locationLG11:4673330..4675738
RNA-Seq ExpressionSed0016546
SyntenySed0016546
Gene Ontology termsGO:0016020 - membrane (cellular component)
InterPro domainsIPR001841 - Zinc finger, RING-type
IPR013083 - Zinc finger, RING/FYVE/PHD-type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004149098.1 RING-H2 finger protein ATL56 [Cucumis sativus]5.8e-5967.23Show/hide
Query:  MPFLNPAAAHGGAA--PSPPPKLDTKFLSLLVKVAIMVLLTTLFFVFVGLATALFLIHLSFAGAVHRHRR-------RVDSSSGLSPNDLKRLLQFRFSD
        MPF   AA  G     P PPPK +T+ LSLL+K+AIM+LLTTLFFVF+GLATAL LIHL  A A+HR RR         DSSSG S  DLK+LLQFRFS+
Subjt:  MPFLNPAAAHGGAA--PSPPPKLDTKFLSLLVKVAIMVLLTTLFFVFVGLATALFLIHLSFAGAVHRHRR-------RVDSSSGLSPNDLKRLLQFRFSD

Query:  WVNPHSQIDCPICLDGFRMGQWCRKLGGCGHFFHRKCIDSWLIRVSACPLCRCSVRLDFDDDRVHCVSERNCEVFNA
        WVNPHSQIDC ICLDGFR GQWCR+LGGCGH +HRKCIDSWL+RVSACPLCR  VRLD ++  + CVS RN E+F A
Subjt:  WVNPHSQIDCPICLDGFRMGQWCRKLGGCGHFFHRKCIDSWLIRVSACPLCRCSVRLDFDDDRVHCVSERNCEVFNA

XP_008452306.1 PREDICTED: RING-H2 finger protein ATL56 [Cucumis melo]2.0e-5967.23Show/hide
Query:  MPFLNPAAAHGGAA--PSPPPKLDTKFLSLLVKVAIMVLLTTLFFVFVGLATALFLIHLSFAGAVHRHRR-------RVDSSSGLSPNDLKRLLQFRFSD
        MPF + AA  G     P PPPK +T+ LSLL+K+AIM+LLTTLFFVF+GLATAL LIHL  A A+HR RR         DSSSG S  DLK+LLQFRFS+
Subjt:  MPFLNPAAAHGGAA--PSPPPKLDTKFLSLLVKVAIMVLLTTLFFVFVGLATALFLIHLSFAGAVHRHRR-------RVDSSSGLSPNDLKRLLQFRFSD

Query:  WVNPHSQIDCPICLDGFRMGQWCRKLGGCGHFFHRKCIDSWLIRVSACPLCRCSVRLDFDDDRVHCVSERNCEVFNA
        WVNPHSQIDC ICLDGFR GQWCR+LGGCGH +HRKCIDSWL+RVSACPLCR  VRLD ++  + CVS RN E+F A
Subjt:  WVNPHSQIDCPICLDGFRMGQWCRKLGGCGHFFHRKCIDSWLIRVSACPLCRCSVRLDFDDDRVHCVSERNCEVFNA

XP_022965979.1 RING-H2 finger protein ATL56-like [Cucurbita maxima]2.1e-5663.28Show/hide
Query:  MPFLNPAAAHGGAAPSPPPKLDTKFLSLLVKVAIMVLLTTLFFVFVGLATALFLIHLSFAGAVHRHRRR--------VDSSSGLSPNDLKRLLQFRFSDW
        MP  +  AA+ G    PPPK + K LSLL+KV+IM++LTTLFFVF+GLATAL LI+   A  +HR RRR         DSSSG S  DLK+LLQFRFS+W
Subjt:  MPFLNPAAAHGGAAPSPPPKLDTKFLSLLVKVAIMVLLTTLFFVFVGLATALFLIHLSFAGAVHRHRRR--------VDSSSGLSPNDLKRLLQFRFSDW

Query:  VNPHSQIDCPICLDGFRMGQWCRKLGGCGHFFHRKCIDSWLIRVSACPLCRCSVRLDFDDDRVHCVSERNCEVFNAP
        VNPHSQIDCPICL GFR GQWCRKLGGCGH +HRKCIDSWL+RVSACPLCR  VRLD +++++ C + R+ E+  AP
Subjt:  VNPHSQIDCPICLDGFRMGQWCRKLGGCGHFFHRKCIDSWLIRVSACPLCRCSVRLDFDDDRVHCVSERNCEVFNAP

XP_023538017.1 RING-H2 finger protein ATL56-like [Cucurbita pepo subsp. pepo]1.2e-5663.84Show/hide
Query:  MPFLNPAAAHGGAAPSPPPKLDTKFLSLLVKVAIMVLLTTLFFVFVGLATALFLIHLSFAGAVHRHRRR--------VDSSSGLSPNDLKRLLQFRFSDW
        MP  +  AA  G    PPPK + K LSLL+KV+IM++LTTLFFVF+GLATAL LI+   A  +HR RRR         DSSSG S  DLK+LLQFRFS+W
Subjt:  MPFLNPAAAHGGAAPSPPPKLDTKFLSLLVKVAIMVLLTTLFFVFVGLATALFLIHLSFAGAVHRHRRR--------VDSSSGLSPNDLKRLLQFRFSDW

Query:  VNPHSQIDCPICLDGFRMGQWCRKLGGCGHFFHRKCIDSWLIRVSACPLCRCSVRLDFDDDRVHCVSERNCEVFNAP
        VNPHSQIDCPICL GFR GQWCRKLGGCGH +HRKCIDSWL+RVSACPLCR SVRLD +++++ C + R+ E+  AP
Subjt:  VNPHSQIDCPICLDGFRMGQWCRKLGGCGHFFHRKCIDSWLIRVSACPLCRCSVRLDFDDDRVHCVSERNCEVFNAP

XP_038889631.1 RING-H2 finger protein ATL56-like [Benincasa hispida]4.9e-5866.67Show/hide
Query:  MPFLNPAAAHGGAA--PSPPPKLDTKFLSLLVKVAIMVLLTTLFFVFVGLATALFLIHLSFAGAVHRHRR-------RVDSSSGLSPNDLKRLLQFRFSD
        MPF + AA  G     P PPPK +T+ LSLL+K+AIM+LLTTLFFVF+GLATAL LIHL  A A+HRHRR         DSS+G S  DLK+LLQFRFS+
Subjt:  MPFLNPAAAHGGAA--PSPPPKLDTKFLSLLVKVAIMVLLTTLFFVFVGLATALFLIHLSFAGAVHRHRR-------RVDSSSGLSPNDLKRLLQFRFSD

Query:  WVNPHSQIDCPICLDGFRMGQWCRKLGGCGHFFHRKCIDSWLIRVSACPLCRCSVRLDFDDDRVHCVSERNCEVFNA
        WVNPHSQIDC ICLDGFR GQWCRKLGGCGH +HRKCIDSWL+RVSACPLCR  VRLD ++  + CVS  N E+  A
Subjt:  WVNPHSQIDCPICLDGFRMGQWCRKLGGCGHFFHRKCIDSWLIRVSACPLCRCSVRLDFDDDRVHCVSERNCEVFNA

TrEMBL top hitse value%identityAlignment
A0A0A0LJ61 RING-type domain-containing protein2.8e-5967.23Show/hide
Query:  MPFLNPAAAHGGAA--PSPPPKLDTKFLSLLVKVAIMVLLTTLFFVFVGLATALFLIHLSFAGAVHRHRR-------RVDSSSGLSPNDLKRLLQFRFSD
        MPF   AA  G     P PPPK +T+ LSLL+K+AIM+LLTTLFFVF+GLATAL LIHL  A A+HR RR         DSSSG S  DLK+LLQFRFS+
Subjt:  MPFLNPAAAHGGAA--PSPPPKLDTKFLSLLVKVAIMVLLTTLFFVFVGLATALFLIHLSFAGAVHRHRR-------RVDSSSGLSPNDLKRLLQFRFSD

Query:  WVNPHSQIDCPICLDGFRMGQWCRKLGGCGHFFHRKCIDSWLIRVSACPLCRCSVRLDFDDDRVHCVSERNCEVFNA
        WVNPHSQIDC ICLDGFR GQWCR+LGGCGH +HRKCIDSWL+RVSACPLCR  VRLD ++  + CVS RN E+F A
Subjt:  WVNPHSQIDCPICLDGFRMGQWCRKLGGCGHFFHRKCIDSWLIRVSACPLCRCSVRLDFDDDRVHCVSERNCEVFNA

A0A1S3BTK8 RING-H2 finger protein ATL569.6e-6067.23Show/hide
Query:  MPFLNPAAAHGGAA--PSPPPKLDTKFLSLLVKVAIMVLLTTLFFVFVGLATALFLIHLSFAGAVHRHRR-------RVDSSSGLSPNDLKRLLQFRFSD
        MPF + AA  G     P PPPK +T+ LSLL+K+AIM+LLTTLFFVF+GLATAL LIHL  A A+HR RR         DSSSG S  DLK+LLQFRFS+
Subjt:  MPFLNPAAAHGGAA--PSPPPKLDTKFLSLLVKVAIMVLLTTLFFVFVGLATALFLIHLSFAGAVHRHRR-------RVDSSSGLSPNDLKRLLQFRFSD

Query:  WVNPHSQIDCPICLDGFRMGQWCRKLGGCGHFFHRKCIDSWLIRVSACPLCRCSVRLDFDDDRVHCVSERNCEVFNA
        WVNPHSQIDC ICLDGFR GQWCR+LGGCGH +HRKCIDSWL+RVSACPLCR  VRLD ++  + CVS RN E+F A
Subjt:  WVNPHSQIDCPICLDGFRMGQWCRKLGGCGHFFHRKCIDSWLIRVSACPLCRCSVRLDFDDDRVHCVSERNCEVFNA

A0A5D3CFV1 RING-H2 finger protein ATL569.6e-6067.23Show/hide
Query:  MPFLNPAAAHGGAA--PSPPPKLDTKFLSLLVKVAIMVLLTTLFFVFVGLATALFLIHLSFAGAVHRHRR-------RVDSSSGLSPNDLKRLLQFRFSD
        MPF + AA  G     P PPPK +T+ LSLL+K+AIM+LLTTLFFVF+GLATAL LIHL  A A+HR RR         DSSSG S  DLK+LLQFRFS+
Subjt:  MPFLNPAAAHGGAA--PSPPPKLDTKFLSLLVKVAIMVLLTTLFFVFVGLATALFLIHLSFAGAVHRHRR-------RVDSSSGLSPNDLKRLLQFRFSD

Query:  WVNPHSQIDCPICLDGFRMGQWCRKLGGCGHFFHRKCIDSWLIRVSACPLCRCSVRLDFDDDRVHCVSERNCEVFNA
        WVNPHSQIDC ICLDGFR GQWCR+LGGCGH +HRKCIDSWL+RVSACPLCR  VRLD ++  + CVS RN E+F A
Subjt:  WVNPHSQIDCPICLDGFRMGQWCRKLGGCGHFFHRKCIDSWLIRVSACPLCRCSVRLDFDDDRVHCVSERNCEVFNA

A0A6J1FIL3 RING-H2 finger protein ATL56-like1.0e-5663.84Show/hide
Query:  MPFLNPAAAHGGAAPSPPPKLDTKFLSLLVKVAIMVLLTTLFFVFVGLATALFLIHLSFAGAVHRHRRR--------VDSSSGLSPNDLKRLLQFRFSDW
        MP  +  AA  G    PPPK + K LSLL+KV+IM++LTTLFFVF+GLATAL LI+   A  +HR RRR         DSSSG S  DLK+LLQFRFS+W
Subjt:  MPFLNPAAAHGGAAPSPPPKLDTKFLSLLVKVAIMVLLTTLFFVFVGLATALFLIHLSFAGAVHRHRRR--------VDSSSGLSPNDLKRLLQFRFSDW

Query:  VNPHSQIDCPICLDGFRMGQWCRKLGGCGHFFHRKCIDSWLIRVSACPLCRCSVRLDFDDDRVHCVSERNCEVFNAP
        VNPHSQIDCPICL GFR GQWCRKLGGCGH +HRKCIDSWL+RVSACPLCR SVRLD +++++ C + R+ E+  AP
Subjt:  VNPHSQIDCPICLDGFRMGQWCRKLGGCGHFFHRKCIDSWLIRVSACPLCRCSVRLDFDDDRVHCVSERNCEVFNAP

A0A6J1HSE6 RING-H2 finger protein ATL56-like1.0e-5663.28Show/hide
Query:  MPFLNPAAAHGGAAPSPPPKLDTKFLSLLVKVAIMVLLTTLFFVFVGLATALFLIHLSFAGAVHRHRRR--------VDSSSGLSPNDLKRLLQFRFSDW
        MP  +  AA+ G    PPPK + K LSLL+KV+IM++LTTLFFVF+GLATAL LI+   A  +HR RRR         DSSSG S  DLK+LLQFRFS+W
Subjt:  MPFLNPAAAHGGAAPSPPPKLDTKFLSLLVKVAIMVLLTTLFFVFVGLATALFLIHLSFAGAVHRHRRR--------VDSSSGLSPNDLKRLLQFRFSDW

Query:  VNPHSQIDCPICLDGFRMGQWCRKLGGCGHFFHRKCIDSWLIRVSACPLCRCSVRLDFDDDRVHCVSERNCEVFNAP
        VNPHSQIDCPICL GFR GQWCRKLGGCGH +HRKCIDSWL+RVSACPLCR  VRLD +++++ C + R+ E+  AP
Subjt:  VNPHSQIDCPICLDGFRMGQWCRKLGGCGHFFHRKCIDSWLIRVSACPLCRCSVRLDFDDDRVHCVSERNCEVFNAP

SwissProt top hitse value%identityAlignment
Q8LBA0 NEP1-interacting protein-like 21.5e-0938.36Show/hide
Query:  GLSPNDLKRLLQFRFSDWVNPHSQIDCPICLDGFRMGQWCRKLGGCGHFFHRKCIDSWLIRVSACPLCRCSVR
        GLS + L++L  +  S  +       C ICL   + G+  R L  C H FH  C+D WLIR  +CP+CR +V+
Subjt:  GLSPNDLKRLLQFRFSDWVNPHSQIDCPICLDGFRMGQWCRKLGGCGHFFHRKCIDSWLIRVSACPLCRCSVR

Q8RX29 RING-H2 finger protein ATL702.0e-0934.15Show/hide
Query:  HRHRRRVDSSSGLSPNDLKRLLQFRFSDWVNPHSQIDCPICLDGFRMGQWCRKLGGCGHFFHRKCIDSWLIRVSACPLCRCS
        H H   +D   GL  + ++   +  +S+   P +   C ICL  ++     R+L  C H FH KCID+WL     CP+CR S
Subjt:  HRHRRRVDSSSGLSPNDLKRLLQFRFSDWVNPHSQIDCPICLDGFRMGQWCRKLGGCGHFFHRKCIDSWLIRVSACPLCRCS

Q9FKX5 NEP1-interacting protein-like 11.4e-1042.25Show/hide
Query:  SSGLSPNDLKRLLQFRFSDWVNPHSQIDCPICLDGFRMGQWCRKLGGCGHFFHRKCIDSWLIRVSACPLCR
        S GL+ + L R+ + R +D  +P   + C +CL  F++G+  R L  C H FH  CID WL R ++CPLCR
Subjt:  SSGLSPNDLKRLLQFRFSDWVNPHSQIDCPICLDGFRMGQWCRKLGGCGHFFHRKCIDSWLIRVSACPLCR

Q9M0C3 RING-H2 finger protein ATL146.1e-2745.77Show/hide
Query:  APSPPP------KLDTKFLS--LLVKVAIMVLLTTLFFVFVGLATALFLIHLSFAGAVHRHR----RRVDSSSGLSPNDLKRLLQFRFSDWVNPHSQIDC
        +PSPPP       L TK LS  L+  + I V +T   F+   L    F     F    +RHR    RR + S GLSP  +KRL QF++ +  + +   DC
Subjt:  APSPPP------KLDTKFLS--LLVKVAIMVLLTTLFFVFVGLATALFLIHLSFAGAVHRHR----RRVDSSSGLSPNDLKRLLQFRFSDWVNPHSQIDC

Query:  PICLDGFRMGQWCRKLGGCGHFFHRKCIDSWLIRVSACPLCR
         +C+DGFR GQWCRKL  CGH FHRKC+D WLI+VS CP+CR
Subjt:  PICLDGFRMGQWCRKLGGCGHFFHRKCIDSWLIRVSACPLCR

Q9ZV51 RING-H2 finger protein ATL562.2e-2947.55Show/hide
Query:  PPPKLDTKFLSLLVKVAIMVLLTTLFFVFVGLATALFLIHLSFAGAVHRH------RRRVDSSSGLSPNDLKRLLQFRFSD-WVNPHSQIDCPICLDGFR
        PPPK  T+ LSL +   IM  +  LF V +G+A+ L L  L    ++HRH       RR +SS GLS   +K+L QF+FS+       + DC +C DGFR
Subjt:  PPPKLDTKFLSLLVKVAIMVLLTTLFFVFVGLATALFLIHLSFAGAVHRH------RRRVDSSSGLSPNDLKRLLQFRFSD-WVNPHSQIDCPICLDGFR

Query:  MGQWCRKLGGCGHFFHRKCIDSWLIRVSACPLCRCSVRLDFDD
         GQWCR L GCGH FHRKC+D+WL++ S CP+CR  VRL  +D
Subjt:  MGQWCRKLGGCGHFFHRKCIDSWLIRVSACPLCRCSVRLDFDD

Arabidopsis top hitse value%identityAlignment
AT2G18670.1 RING/U-box superfamily protein1.6e-3047.55Show/hide
Query:  PPPKLDTKFLSLLVKVAIMVLLTTLFFVFVGLATALFLIHLSFAGAVHRH------RRRVDSSSGLSPNDLKRLLQFRFSD-WVNPHSQIDCPICLDGFR
        PPPK  T+ LSL +   IM  +  LF V +G+A+ L L  L    ++HRH       RR +SS GLS   +K+L QF+FS+       + DC +C DGFR
Subjt:  PPPKLDTKFLSLLVKVAIMVLLTTLFFVFVGLATALFLIHLSFAGAVHRH------RRRVDSSSGLSPNDLKRLLQFRFSD-WVNPHSQIDCPICLDGFR

Query:  MGQWCRKLGGCGHFFHRKCIDSWLIRVSACPLCRCSVRLDFDD
         GQWCR L GCGH FHRKC+D+WL++ S CP+CR  VRL  +D
Subjt:  MGQWCRKLGGCGHFFHRKCIDSWLIRVSACPLCRCSVRLDFDD

AT2G35910.1 RING/U-box superfamily protein1.4e-1034.15Show/hide
Query:  HRHRRRVDSSSGLSPNDLKRLLQFRFSDWVNPHSQIDCPICLDGFRMGQWCRKLGGCGHFFHRKCIDSWLIRVSACPLCRCS
        H H   +D   GL  + ++   +  +S+   P +   C ICL  ++     R+L  C H FH KCID+WL     CP+CR S
Subjt:  HRHRRRVDSSSGLSPNDLKRLLQFRFSDWVNPHSQIDCPICLDGFRMGQWCRKLGGCGHFFHRKCIDSWLIRVSACPLCRCS

AT4G30370.1 RING/U-box superfamily protein4.3e-2845.77Show/hide
Query:  APSPPP------KLDTKFLS--LLVKVAIMVLLTTLFFVFVGLATALFLIHLSFAGAVHRHR----RRVDSSSGLSPNDLKRLLQFRFSDWVNPHSQIDC
        +PSPPP       L TK LS  L+  + I V +T   F+   L    F     F    +RHR    RR + S GLSP  +KRL QF++ +  + +   DC
Subjt:  APSPPP------KLDTKFLS--LLVKVAIMVLLTTLFFVFVGLATALFLIHLSFAGAVHRHR----RRVDSSSGLSPNDLKRLLQFRFSDWVNPHSQIDC

Query:  PICLDGFRMGQWCRKLGGCGHFFHRKCIDSWLIRVSACPLCR
         +C+DGFR GQWCRKL  CGH FHRKC+D WLI+VS CP+CR
Subjt:  PICLDGFRMGQWCRKLGGCGHFFHRKCIDSWLIRVSACPLCR

AT5G66070.1 RING/U-box superfamily protein9.7e-1242.25Show/hide
Query:  SSGLSPNDLKRLLQFRFSDWVNPHSQIDCPICLDGFRMGQWCRKLGGCGHFFHRKCIDSWLIRVSACPLCR
        S GL+ + L R+ + R +D  +P   + C +CL  F++G+  R L  C H FH  CID WL R ++CPLCR
Subjt:  SSGLSPNDLKRLLQFRFSDWVNPHSQIDCPICLDGFRMGQWCRKLGGCGHFFHRKCIDSWLIRVSACPLCR

AT5G66070.2 RING/U-box superfamily protein2.4e-1035.77Show/hide
Query:  SLLVKVAIMVLLTTLFFVFVGLATALFLIHLSFAGAVHR----HRRRVDS--SSGLSPNDLKRLLQFRFSDWVNPHSQIDCPICLDGFRMGQWCRKLGGC
        ++L  V   V L  LFF    +    F I+    GAV      H    D+  S GL+ + L R+ + R +D  +P   + C +CL  F++G+  R L  C
Subjt:  SLLVKVAIMVLLTTLFFVFVGLATALFLIHLSFAGAVHR----HRRRVDS--SSGLSPNDLKRLLQFRFSDWVNPHSQIDCPICLDGFRMGQWCRKLGGC

Query:  GHFFHRKCIDSWLIRVSACPLCR
         H FH  CID WL R ++CPLCR
Subjt:  GHFFHRKCIDSWLIRVSACPLCR


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCCATTTCTAAATCCCGCCGCCGCCCACGGCGGCGCCGCCCCATCGCCGCCACCAAAGCTGGACACAAAATTCCTCTCTCTCCTCGTCAAAGTCGCCATCATGGTCCT
CTTAACCACCCTGTTCTTCGTCTTCGTCGGCCTCGCCACCGCCCTCTTCCTCATCCACCTCTCCTTCGCCGGCGCCGTCCACCGCCACCGCCGCCGCGTCGATTCCTCAT
CTGGGCTTTCCCCTAACGACCTGAAAAGGCTCCTCCAGTTTCGATTCTCCGATTGGGTCAATCCCCATTCCCAAATTGATTGCCCCATTTGCCTCGACGGGTTTCGAATG
GGCCAATGGTGCCGGAAACTTGGCGGGTGCGGCCATTTTTTTCACCGGAAATGTATCGATTCGTGGCTGATTAGGGTTTCGGCTTGCCCCCTTTGCCGGTGCTCTGTTCG
GTTGGATTTTGATGATGATCGAGTTCATTGCGTAAGTGAAAGGAATTGTGAAGTTTTTAATGCTCCTTGA
mRNA sequenceShow/hide mRNA sequence
ATGCCATTTCTAAATCCCGCCGCCGCCCACGGCGGCGCCGCCCCATCGCCGCCACCAAAGCTGGACACAAAATTCCTCTCTCTCCTCGTCAAAGTCGCCATCATGGTCCT
CTTAACCACCCTGTTCTTCGTCTTCGTCGGCCTCGCCACCGCCCTCTTCCTCATCCACCTCTCCTTCGCCGGCGCCGTCCACCGCCACCGCCGCCGCGTCGATTCCTCAT
CTGGGCTTTCCCCTAACGACCTGAAAAGGCTCCTCCAGTTTCGATTCTCCGATTGGGTCAATCCCCATTCCCAAATTGATTGCCCCATTTGCCTCGACGGGTTTCGAATG
GGCCAATGGTGCCGGAAACTTGGCGGGTGCGGCCATTTTTTTCACCGGAAATGTATCGATTCGTGGCTGATTAGGGTTTCGGCTTGCCCCCTTTGCCGGTGCTCTGTTCG
GTTGGATTTTGATGATGATCGAGTTCATTGCGTAAGTGAAAGGAATTGTGAAGTTTTTAATGCTCCTTGA
Protein sequenceShow/hide protein sequence
MPFLNPAAAHGGAAPSPPPKLDTKFLSLLVKVAIMVLLTTLFFVFVGLATALFLIHLSFAGAVHRHRRRVDSSSGLSPNDLKRLLQFRFSDWVNPHSQIDCPICLDGFRM
GQWCRKLGGCGHFFHRKCIDSWLIRVSACPLCRCSVRLDFDDDRVHCVSERNCEVFNAP