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Sed0016549 (gene) of Chayote v1 genome

Gene IDSed0016549
OrganismSechium edule (Chayote v1)
DescriptionPlant transposase
Genome locationLG14:15988271..15989812
RNA-Seq ExpressionSed0016549
SyntenySed0016549
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0036852.1 Plant transposase [Cucumis melo var. makuwa]5.8e-2544.69Show/hide
Query:  MGRLWKAEKSCLVAQIHNASTKDALLKLMPDNLQSKDVWMDFVTEKMSSNF-------------------------------------------------
        MGRLW+A KS LV QI +A TKDA+LKLMPDNLQS D WMDFV+EK S+ F                                                 
Subjt:  MGRLWKAEKSCLVAQIHNASTKDALLKLMPDNLQSKDVWMDFVTEKMSSNF-------------------------------------------------

Query:  -----------------MERIEQIEVDTTTSTNNVVDDALNKVLGPVCGHVRGLVFCVTHSKLSMLSQQDNKYMNLEKK
                         ++RIEQ E +TT ST NVVDDAL+KVLGP  GHVRG  F VT SKLS+LSQQD+KY  LEK+
Subjt:  -----------------MERIEQIEVDTTTSTNNVVDDALNKVLGPVCGHVRGLVFCVTHSKLSMLSQQDNKYMNLEKK

KAA0041468.1 Plant transposase [Cucumis melo var. makuwa]4.0e-2653.02Show/hide
Query:  MGRLWKAEKSCLVAQIHNASTKDALLKLMPDNLQSKDVWMDFVTEKMSSNF------------------------------------MERIEQIEVDTTT
        MGRLW+A KS LV QI +A TKDA+LKLMPDNLQS D WMDFV+EK S+ F                                    +E IEQ E +TT 
Subjt:  MGRLWKAEKSCLVAQIHNASTKDALLKLMPDNLQSKDVWMDFVTEKMSSNF------------------------------------MERIEQIEVDTTT

Query:  STNNVVDDALNKVLGPVCGHVRGLVFCVTHSKLSMLSQQDNKYMNLEKK
        ST NVVDDAL+KVLG   GHVRG  F VT  KLS LSQQD+KY  LEKK
Subjt:  STNNVVDDALNKVLGPVCGHVRGLVFCVTHSKLSMLSQQDNKYMNLEKK

KAA0060366.1 Plant transposase [Cucumis melo var. makuwa]3.5e-3055.03Show/hide
Query:  MGRLWKAEKSCLVAQIHNASTKDALLKLMPDNLQSKDVWMDFVTEKMSSNF------------------------------------MERIEQIEVDTTT
        MGRLW+A KSCLV QI +A TKDA+LKLMPDNLQS D WMDFV+EK S+ F                                    +ERIEQ E +TT 
Subjt:  MGRLWKAEKSCLVAQIHNASTKDALLKLMPDNLQSKDVWMDFVTEKMSSNF------------------------------------MERIEQIEVDTTT

Query:  STNNVVDDALNKVLGPVCGHVRGLVFCVTHSKLSMLSQQDNKYMNLEKK
        ST NVVDDAL+KVLGP  GHVRG  F VT SKLS+LSQQD+KY  LEK+
Subjt:  STNNVVDDALNKVLGPVCGHVRGLVFCVTHSKLSMLSQQDNKYMNLEKK

KAA0066537.1 Plant transposase [Cucumis melo var. makuwa]2.6e-2545.25Show/hide
Query:  MGRLWKAEKSCLVAQIHNASTKDALLKLMPDNLQSKDVWMDFVTEKMSSNF-------------------------------------------------
        MGRLW+A KS LV QI +A TKDA+LKLMPDNLQS D WMDFV+EK S+ F                                                 
Subjt:  MGRLWKAEKSCLVAQIHNASTKDALLKLMPDNLQSKDVWMDFVTEKMSSNF-------------------------------------------------

Query:  -----------------MERIEQIEVDTTTSTNNVVDDALNKVLGPVCGHVRGLVFCVTHSKLSMLSQQDNKYMNLEKK
                         +ERIEQ E +TT ST NVVDDAL+KVLGP  GHVRG  F VT SKLS+LSQQD+KY  LEK+
Subjt:  -----------------MERIEQIEVDTTTSTNNVVDDALNKVLGPVCGHVRGLVFCVTHSKLSMLSQQDNKYMNLEKK

TYK25923.1 Plant transposase [Cucumis melo var. makuwa]2.6e-2545.25Show/hide
Query:  MGRLWKAEKSCLVAQIHNASTKDALLKLMPDNLQSKDVWMDFVTEKMSSNF-------------------------------------------------
        MGRLW+A KS LV QI +A TKDA+LKLMPDNLQS D WMDFV+EK S+ F                                                 
Subjt:  MGRLWKAEKSCLVAQIHNASTKDALLKLMPDNLQSKDVWMDFVTEKMSSNF-------------------------------------------------

Query:  -----------------MERIEQIEVDTTTSTNNVVDDALNKVLGPVCGHVRGLVFCVTHSKLSMLSQQDNKYMNLEKK
                         +ERIEQ E +TT ST NVVDDAL+KVLGP  GHVRG  F VT SKLS+LSQQD+KY  LEK+
Subjt:  -----------------MERIEQIEVDTTTSTNNVVDDALNKVLGPVCGHVRGLVFCVTHSKLSMLSQQDNKYMNLEKK

TrEMBL top hitse value%identityAlignment
A0A5A7T097 Plant transposase2.8e-2544.69Show/hide
Query:  MGRLWKAEKSCLVAQIHNASTKDALLKLMPDNLQSKDVWMDFVTEKMSSNF-------------------------------------------------
        MGRLW+A KS LV QI +A TKDA+LKLMPDNLQS D WMDFV+EK S+ F                                                 
Subjt:  MGRLWKAEKSCLVAQIHNASTKDALLKLMPDNLQSKDVWMDFVTEKMSSNF-------------------------------------------------

Query:  -----------------MERIEQIEVDTTTSTNNVVDDALNKVLGPVCGHVRGLVFCVTHSKLSMLSQQDNKYMNLEKK
                         ++RIEQ E +TT ST NVVDDAL+KVLGP  GHVRG  F VT SKLS+LSQQD+KY  LEK+
Subjt:  -----------------MERIEQIEVDTTTSTNNVVDDALNKVLGPVCGHVRGLVFCVTHSKLSMLSQQDNKYMNLEKK

A0A5A7TEX1 Plant transposase1.9e-2653.02Show/hide
Query:  MGRLWKAEKSCLVAQIHNASTKDALLKLMPDNLQSKDVWMDFVTEKMSSNF------------------------------------MERIEQIEVDTTT
        MGRLW+A KS LV QI +A TKDA+LKLMPDNLQS D WMDFV+EK S+ F                                    +E IEQ E +TT 
Subjt:  MGRLWKAEKSCLVAQIHNASTKDALLKLMPDNLQSKDVWMDFVTEKMSSNF------------------------------------MERIEQIEVDTTT

Query:  STNNVVDDALNKVLGPVCGHVRGLVFCVTHSKLSMLSQQDNKYMNLEKK
        ST NVVDDAL+KVLG   GHVRG  F VT  KLS LSQQD+KY  LEKK
Subjt:  STNNVVDDALNKVLGPVCGHVRGLVFCVTHSKLSMLSQQDNKYMNLEKK

A0A5A7V1K6 Plant transposase1.7e-3055.03Show/hide
Query:  MGRLWKAEKSCLVAQIHNASTKDALLKLMPDNLQSKDVWMDFVTEKMSSNF------------------------------------MERIEQIEVDTTT
        MGRLW+A KSCLV QI +A TKDA+LKLMPDNLQS D WMDFV+EK S+ F                                    +ERIEQ E +TT 
Subjt:  MGRLWKAEKSCLVAQIHNASTKDALLKLMPDNLQSKDVWMDFVTEKMSSNF------------------------------------MERIEQIEVDTTT

Query:  STNNVVDDALNKVLGPVCGHVRGLVFCVTHSKLSMLSQQDNKYMNLEKK
        ST NVVDDAL+KVLGP  GHVRG  F VT SKLS+LSQQD+KY  LEK+
Subjt:  STNNVVDDALNKVLGPVCGHVRGLVFCVTHSKLSMLSQQDNKYMNLEKK

A0A5A7VHH9 Plant transposase1.3e-2545.25Show/hide
Query:  MGRLWKAEKSCLVAQIHNASTKDALLKLMPDNLQSKDVWMDFVTEKMSSNF-------------------------------------------------
        MGRLW+A KS LV QI +A TKDA+LKLMPDNLQS D WMDFV+EK S+ F                                                 
Subjt:  MGRLWKAEKSCLVAQIHNASTKDALLKLMPDNLQSKDVWMDFVTEKMSSNF-------------------------------------------------

Query:  -----------------MERIEQIEVDTTTSTNNVVDDALNKVLGPVCGHVRGLVFCVTHSKLSMLSQQDNKYMNLEKK
                         +ERIEQ E +TT ST NVVDDAL+KVLGP  GHVRG  F VT SKLS+LSQQD+KY  LEK+
Subjt:  -----------------MERIEQIEVDTTTSTNNVVDDALNKVLGPVCGHVRGLVFCVTHSKLSMLSQQDNKYMNLEKK

A0A5D3DQI7 Plant transposase1.3e-2545.25Show/hide
Query:  MGRLWKAEKSCLVAQIHNASTKDALLKLMPDNLQSKDVWMDFVTEKMSSNF-------------------------------------------------
        MGRLW+A KS LV QI +A TKDA+LKLMPDNLQS D WMDFV+EK S+ F                                                 
Subjt:  MGRLWKAEKSCLVAQIHNASTKDALLKLMPDNLQSKDVWMDFVTEKMSSNF-------------------------------------------------

Query:  -----------------MERIEQIEVDTTTSTNNVVDDALNKVLGPVCGHVRGLVFCVTHSKLSMLSQQDNKYMNLEKK
                         +ERIEQ E +TT ST NVVDDAL+KVLGP  GHVRG  F VT SKLS+LSQQD+KY  LEK+
Subjt:  -----------------MERIEQIEVDTTTSTNNVVDDALNKVLGPVCGHVRGLVFCVTHSKLSMLSQQDNKYMNLEKK

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGTAGATTATGGAAGGCTGAAAAATCTTGTTTGGTAGCACAGATTCACAATGCCTCAACAAAAGACGCACTTTTGAAACTTATGCCAGATAATTTGCAATCTAAAGA
TGTCTGGATGGATTTTGTTACTGAGAAAATGAGTTCAAACTTCATGGAGCGCATTGAACAAATAGAGGTTGATACAACTACTTCAACAAATAACGTGGTTGATGATGCCT
TGAATAAAGTTCTTGGCCCTGTTTGTGGGCATGTAAGAGGACTTGTTTTTTGTGTGACTCATTCAAAGTTATCTATGCTTTCTCAACAAGATAACAAGTACATGAACCTT
GAAAAAAAAACATTTGAAGATAACAGAAGAAATGATGGAAATGAAATCATTGATTTCATGTTTTATAAAGAAACAGAGTATTAA
mRNA sequenceShow/hide mRNA sequence
ATGGGTAGATTATGGAAGGCTGAAAAATCTTGTTTGGTAGCACAGATTCACAATGCCTCAACAAAAGACGCACTTTTGAAACTTATGCCAGATAATTTGCAATCTAAAGA
TGTCTGGATGGATTTTGTTACTGAGAAAATGAGTTCAAACTTCATGGAGCGCATTGAACAAATAGAGGTTGATACAACTACTTCAACAAATAACGTGGTTGATGATGCCT
TGAATAAAGTTCTTGGCCCTGTTTGTGGGCATGTAAGAGGACTTGTTTTTTGTGTGACTCATTCAAAGTTATCTATGCTTTCTCAACAAGATAACAAGTACATGAACCTT
GAAAAAAAAACATTTGAAGATAACAGAAGAAATGATGGAAATGAAATCATTGATTTCATGTTTTATAAAGAAACAGAGTATTAA
Protein sequenceShow/hide protein sequence
MGRLWKAEKSCLVAQIHNASTKDALLKLMPDNLQSKDVWMDFVTEKMSSNFMERIEQIEVDTTTSTNNVVDDALNKVLGPVCGHVRGLVFCVTHSKLSMLSQQDNKYMNL
EKKTFEDNRRNDGNEIIDFMFYKETEY