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Sed0016564 (gene) of Chayote v1 genome

Gene IDSed0016564
OrganismSechium edule (Chayote v1)
Descriptionprotein RADIALIS-like 1
Genome locationLG04:47364118..47364504
RNA-Seq ExpressionSed0016564
SyntenySed0016564
Gene Ontology termsGO:0006355 - regulation of transcription, DNA-templated (biological process)
GO:0003700 - DNA-binding transcription factor activity (molecular function)
InterPro domainsIPR001005 - SANT/Myb domain
IPR009057 - Homeobox-like domain superfamily
IPR017884 - SANT domain
IPR017930 - Myb domain
IPR044636 - Transcription factor RADIALIS-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_008447026.1 PREDICTED: protein RADIALIS-like 1 [Cucumis melo]1.0e-2165.82Show/hide
Query:  MASMSAHGSSSWSPMENKAFEEALAVFDQNTPERWHNVAKAIGGRTAEEVKKHYELLVEDVNYIIQSAEISYPYRSSRR
        MASMSAHGS+ W+ +ENKAFE+ALA++D++TPERW NVAKAIGG+T E+VK+HY+LL+EDVN+ I++ +I +PYR+S R
Subjt:  MASMSAHGSSSWSPMENKAFEEALAVFDQNTPERWHNVAKAIGGRTAEEVKKHYELLVEDVNYIIQSAEISYPYRSSRR

XP_022136064.1 protein RADIALIS-like 1 [Momordica charantia]4.1e-2371.43Show/hide
Query:  MASMSAHGSSSWSPMENKAFEEALAVFDQNTPERWHNVAKAIGGRTAEEVKKHYELLVEDVNYIIQSAEISYPYRSS
        MASMS+HGSS+W+  +NKAFE+ALAV+DQ+TPERW NVAKA+GG+TAEEVK+HYELLVEDV + I+S ++S+PYR+S
Subjt:  MASMSAHGSSSWSPMENKAFEEALAVFDQNTPERWHNVAKAIGGRTAEEVKKHYELLVEDVNYIIQSAEISYPYRSS

XP_022952660.1 protein RADIALIS-like 1 [Cucurbita moschata]2.4e-2373.42Show/hide
Query:  MASMSAHGSSSWSPMENKAFEEALAVFDQNTPERWHNVAKAIGGRTAEEVKKHYELLVEDVNYIIQSAEISYPYRSSRR
        MASMSAHGSS+W+  ENKAFE+ALAVFDQ+TPERW NVAKAIGG+T +EVK+HY+LLV+DV + I+S EI++PYRSS R
Subjt:  MASMSAHGSSSWSPMENKAFEEALAVFDQNTPERWHNVAKAIGGRTAEEVKKHYELLVEDVNYIIQSAEISYPYRSSRR

XP_022972544.1 protein RADIALIS-like 1 [Cucurbita maxima]7.0e-2372.15Show/hide
Query:  MASMSAHGSSSWSPMENKAFEEALAVFDQNTPERWHNVAKAIGGRTAEEVKKHYELLVEDVNYIIQSAEISYPYRSSRR
        MASMSAHGSS+W+  ENKAFE+ALAVFDQ+TP+RW NVAKAIGG+T +EVK+HY+LLV DV + I+S EI++PYRSS R
Subjt:  MASMSAHGSSSWSPMENKAFEEALAVFDQNTPERWHNVAKAIGGRTAEEVKKHYELLVEDVNYIIQSAEISYPYRSSRR

XP_038888369.1 protein RADIALIS-like 1 [Benincasa hispida]5.9e-2269.23Show/hide
Query:  MASMSAHGSSSWSPMENKAFEEALAVFDQNTPERWHNVAKAIGGRTAEEVKKHYELLVEDVNYIIQSAEISYPYRSSR
        MASMS+HGS SW+  +NKAFE+ALAV+DQ+TP+RW NVAKA+GG+TAEEVK HY LLVEDV + I+S ++ +PYRSSR
Subjt:  MASMSAHGSSSWSPMENKAFEEALAVFDQNTPERWHNVAKAIGGRTAEEVKKHYELLVEDVNYIIQSAEISYPYRSSR

TrEMBL top hitse value%identityAlignment
A0A0A0K3K0 SANT domain-containing protein4.4e-2369.62Show/hide
Query:  MASMSAHGSSSWSPMENKAFEEALAVFDQNTPERWHNVAKAIGGRTAEEVKKHYELLVEDVNYIIQSAEISYPYRSSRR
        MASMSAHGSS+W+ +ENKAFE+ALA++D++TPERW NVAKAIGG+T EEVK+HY+LL+EDVN+ I+S +I +PYR S R
Subjt:  MASMSAHGSSSWSPMENKAFEEALAVFDQNTPERWHNVAKAIGGRTAEEVKKHYELLVEDVNYIIQSAEISYPYRSSRR

A0A1S3BGF0 protein RADIALIS-like 14.9e-2265.82Show/hide
Query:  MASMSAHGSSSWSPMENKAFEEALAVFDQNTPERWHNVAKAIGGRTAEEVKKHYELLVEDVNYIIQSAEISYPYRSSRR
        MASMSAHGS+ W+ +ENKAFE+ALA++D++TPERW NVAKAIGG+T E+VK+HY+LL+EDVN+ I++ +I +PYR+S R
Subjt:  MASMSAHGSSSWSPMENKAFEEALAVFDQNTPERWHNVAKAIGGRTAEEVKKHYELLVEDVNYIIQSAEISYPYRSSRR

A0A6J1C385 protein RADIALIS-like 12.0e-2371.43Show/hide
Query:  MASMSAHGSSSWSPMENKAFEEALAVFDQNTPERWHNVAKAIGGRTAEEVKKHYELLVEDVNYIIQSAEISYPYRSS
        MASMS+HGSS+W+  +NKAFE+ALAV+DQ+TPERW NVAKA+GG+TAEEVK+HYELLVEDV + I+S ++S+PYR+S
Subjt:  MASMSAHGSSSWSPMENKAFEEALAVFDQNTPERWHNVAKAIGGRTAEEVKKHYELLVEDVNYIIQSAEISYPYRSS

A0A6J1GKV1 protein RADIALIS-like 11.2e-2373.42Show/hide
Query:  MASMSAHGSSSWSPMENKAFEEALAVFDQNTPERWHNVAKAIGGRTAEEVKKHYELLVEDVNYIIQSAEISYPYRSSRR
        MASMSAHGSS+W+  ENKAFE+ALAVFDQ+TPERW NVAKAIGG+T +EVK+HY+LLV+DV + I+S EI++PYRSS R
Subjt:  MASMSAHGSSSWSPMENKAFEEALAVFDQNTPERWHNVAKAIGGRTAEEVKKHYELLVEDVNYIIQSAEISYPYRSSRR

A0A6J1I8Y0 protein RADIALIS-like 13.4e-2372.15Show/hide
Query:  MASMSAHGSSSWSPMENKAFEEALAVFDQNTPERWHNVAKAIGGRTAEEVKKHYELLVEDVNYIIQSAEISYPYRSSRR
        MASMSAHGSS+W+  ENKAFE+ALAVFDQ+TP+RW NVAKAIGG+T +EVK+HY+LLV DV + I+S EI++PYRSS R
Subjt:  MASMSAHGSSSWSPMENKAFEEALAVFDQNTPERWHNVAKAIGGRTAEEVKKHYELLVEDVNYIIQSAEISYPYRSSRR

SwissProt top hitse value%identityAlignment
F4JVB8 Protein RADIALIS-like 14.9e-1957.14Show/hide
Query:  ASMSAHGSSSWSPMENKAFEEALAVFDQNTPERWHNVAKAIGGRTAEEVKKHYELLVEDVNYIIQSAEISYP-YRSS
        +SMS+  S SW+  +NKAFE+ALA +DQ+TP RW NVAK +GG+T EEVK+HYELLV+D+N  I++  + +P YR+S
Subjt:  ASMSAHGSSSWSPMENKAFEEALAVFDQNTPERWHNVAKAIGGRTAEEVKKHYELLVEDVNYIIQSAEISYP-YRSS

Q58FS3 Transcription factor RADIALIS2.0e-1758.97Show/hide
Query:  MASMSAHGSSSWSPMENKAFEEALAVFDQNTPERWHNVAKAIGGRTAEEVKKHYELLVEDVNYIIQSAEISYP-YRSS
        MAS    G   WS  ENKAFE ALAV+D++TP+RW NVA+A+ GRT EEVKKHYE+LVED+ Y I+S ++ +P YR++
Subjt:  MASMSAHGSSSWSPMENKAFEEALAVFDQNTPERWHNVAKAIGGRTAEEVKKHYELLVEDVNYIIQSAEISYP-YRSS

Q6NNN0 Protein RADIALIS-like 31.1e-1858.97Show/hide
Query:  MASMSAHGSSSWSPMENKAFEEALAVFDQNTPERWHNVAKAIGGRTAEEVKKHYELLVEDVNYIIQSAEISYP-YRSS
        MAS S   S+SW+  ENK FE ALA +DQ+TP+RWHNVA+A+GG++AEEV++HYELL+ DVN  I+S    +P YRS+
Subjt:  MASMSAHGSSSWSPMENKAFEEALAVFDQNTPERWHNVAKAIGGRTAEEVKKHYELLVEDVNYIIQSAEISYP-YRSS

Q8GW75 Protein RADIALIS-like 51.7e-1660.61Show/hide
Query:  MASMSAHGSSSWSPMENKAFEEALAVFDQNTPERWHNVAKAIGGRTAEEVKKHYELLVEDVNYIIQ
        MAS S   SSSW+  +NK FE ALAV+D++TP+RW NVAKA+G ++AEEVK+HY++LVED+  I Q
Subjt:  MASMSAHGSSSWSPMENKAFEEALAVFDQNTPERWHNVAKAIGGRTAEEVKKHYELLVEDVNYIIQ

Q9SIJ5 Protein RADIALIS-like 27.0e-1856.34Show/hide
Query:  SMSAHGSSSWSPMENKAFEEALAVFDQNTPERWHNVAKAIGGRTAEEVKKHYELLVEDVNYIIQSAEISYP
        SMS++GS SW+  +NKAFE ALAV+DQ+TP+RWHNVA+A+GG+T EE K+ Y+LLV D+   I++  + +P
Subjt:  SMSAHGSSSWSPMENKAFEEALAVFDQNTPERWHNVAKAIGGRTAEEVKKHYELLVEDVNYIIQSAEISYP

Arabidopsis top hitse value%identityAlignment
AT1G19510.1 RAD-like 51.2e-1760.61Show/hide
Query:  MASMSAHGSSSWSPMENKAFEEALAVFDQNTPERWHNVAKAIGGRTAEEVKKHYELLVEDVNYIIQ
        MAS S   SSSW+  +NK FE ALAV+D++TP+RW NVAKA+G ++AEEVK+HY++LVED+  I Q
Subjt:  MASMSAHGSSSWSPMENKAFEEALAVFDQNTPERWHNVAKAIGGRTAEEVKKHYELLVEDVNYIIQ

AT1G75250.1 RAD-like 62.7e-1762.3Show/hide
Query:  MASMSAHGSSSWSPMENKAFEEALAVFDQNTPERWHNVAKAIGGRTAEEVKKHYELLVEDV
        MAS S    S W+  +NK FE ALAV+D++TP+RWHNVAKA+GG+T EEVK+HY++LVED+
Subjt:  MASMSAHGSSSWSPMENKAFEEALAVFDQNTPERWHNVAKAIGGRTAEEVKKHYELLVEDV

AT1G75250.2 RAD-like 62.7e-1762.3Show/hide
Query:  MASMSAHGSSSWSPMENKAFEEALAVFDQNTPERWHNVAKAIGGRTAEEVKKHYELLVEDV
        MAS S    S W+  +NK FE ALAV+D++TP+RWHNVAKA+GG+T EEVK+HY++LVED+
Subjt:  MASMSAHGSSSWSPMENKAFEEALAVFDQNTPERWHNVAKAIGGRTAEEVKKHYELLVEDV

AT2G21650.1 Homeodomain-like superfamily protein5.0e-1956.34Show/hide
Query:  SMSAHGSSSWSPMENKAFEEALAVFDQNTPERWHNVAKAIGGRTAEEVKKHYELLVEDVNYIIQSAEISYP
        SMS++GS SW+  +NKAFE ALAV+DQ+TP+RWHNVA+A+GG+T EE K+ Y+LLV D+   I++  + +P
Subjt:  SMSAHGSSSWSPMENKAFEEALAVFDQNTPERWHNVAKAIGGRTAEEVKKHYELLVEDVNYIIQSAEISYP

AT4G39250.1 RAD-like 13.4e-2057.14Show/hide
Query:  ASMSAHGSSSWSPMENKAFEEALAVFDQNTPERWHNVAKAIGGRTAEEVKKHYELLVEDVNYIIQSAEISYP-YRSS
        +SMS+  S SW+  +NKAFE+ALA +DQ+TP RW NVAK +GG+T EEVK+HYELLV+D+N  I++  + +P YR+S
Subjt:  ASMSAHGSSSWSPMENKAFEEALAVFDQNTPERWHNVAKAIGGRTAEEVKKHYELLVEDVNYIIQSAEISYP-YRSS


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTTCAATGTCAGCTCATGGTTCAAGTTCATGGAGTCCAATGGAAAACAAAGCATTTGAGGAAGCTTTGGCAGTGTTTGACCAAAACACACCTGAAAGATGGCACAA
TGTTGCAAAGGCCATTGGTGGAAGAACTGCTGAAGAAGTAAAAAAACATTATGAGCTTCTTGTGGAGGATGTTAACTATATTATTCAGTCTGCTGAAATTTCGTACCCTT
ATCGAAGCTCGAGGAGATAA
mRNA sequenceShow/hide mRNA sequence
GAAATAACAATGGCTTCAATGTCAGCTCATGGTTCAAGTTCATGGAGTCCAATGGAAAACAAAGCATTTGAGGAAGCTTTGGCAGTGTTTGACCAAAACACACCTGAAAG
ATGGCACAATGTTGCAAAGGCCATTGGTGGAAGAACTGCTGAAGAAGTAAAAAAACATTATGAGCTTCTTGTGGAGGATGTTAACTATATTATTCAGTCTGCTGAAATTT
CGTACCCTTATCGAAGCTCGAGGAGATAAAGTATGTACAACGTCGATAACATGTTTGACGAATAAAAATATATCTCAACTACCATAAAATGTGTGCTTATAGTTTTGTTT
GTAACCTATGATCGAGGTTGGTTTAAATATAAATGAATCCTTTGGATTCAAATTTAG
Protein sequenceShow/hide protein sequence
MASMSAHGSSSWSPMENKAFEEALAVFDQNTPERWHNVAKAIGGRTAEEVKKHYELLVEDVNYIIQSAEISYPYRSSRR