; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Sed0016565 (gene) of Chayote v1 genome

Gene IDSed0016565
OrganismSechium edule (Chayote v1)
DescriptionPol protein
Genome locationLG10:26616897..26617844
RNA-Seq ExpressionSed0016565
SyntenySed0016565
Gene Ontology termsGO:0006259 - DNA metabolic process (biological process)
GO:0004518 - nuclease activity (molecular function)
GO:0016779 - nucleotidyltransferase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0025823.1 pol protein [Cucumis melo var. makuwa]5.7e-1360Show/hide
Query:  VFSCIGVRQYVSDPSLIVDFEPLQLIEDLSFKGKPVSILVFETKTLHNRGIRLVKVQWRSQSSEEAACER
        VF    +R+YV+DP+ +VDFEPLQ+ EDLS+K +PV IL  E K LHNRGI LVKV WR+   EEA  ER
Subjt:  VFSCIGVRQYVSDPSLIVDFEPLQLIEDLSFKGKPVSILVFETKTLHNRGIRLVKVQWRSQSSEEAACER

KAA0063714.1 hypothetical protein E6C27_scaffold329G002370 [Cucumis melo var. makuwa]1.4e-1453.26Show/hide
Query:  VFSCIGVRQYVSDPSLIVDFEPLQLIEDLSFKGKPVSILVFETKTLHNRGIRLVKVQWRSQSSEEAACERGRRDEIAVSGPVSVLRTFEDES
        VF    +R+YV+DP+ +V+F+PLQ+ EDLS++ +PV IL  E K LHNRGI LVKV WR+   EEA  ER   D  A     S +RTFEDES
Subjt:  VFSCIGVRQYVSDPSLIVDFEPLQLIEDLSFKGKPVSILVFETKTLHNRGIRLVKVQWRSQSSEEAACERGRRDEIAVSGPVSVLRTFEDES

KAA0066924.1 pol protein [Cucumis melo var. makuwa]4.0e-1450.52Show/hide
Query:  VFSCIGVRQYVSDPSLIVDFEPLQLIEDLSFKGKPVSILVFETKTLHNRGIRLVKVQWRSQSSEEAACERGRRDEIAVSGPVSVLRTFEDESHKKEG
        VF    +R+YVS+P+ +VDFEPLQ+ E+LS++ +PV I   E K L NRGI LVKV WR+   EEA  ER   D  A     S +RTFED+S  K+G
Subjt:  VFSCIGVRQYVSDPSLIVDFEPLQLIEDLSFKGKPVSILVFETKTLHNRGIRLVKVQWRSQSSEEAACERGRRDEIAVSGPVSVLRTFEDESHKKEG

TYK27113.1 hypothetical protein E5676_scaffold478G00020 [Cucumis melo var. makuwa]1.4e-1453.26Show/hide
Query:  VFSCIGVRQYVSDPSLIVDFEPLQLIEDLSFKGKPVSILVFETKTLHNRGIRLVKVQWRSQSSEEAACERGRRDEIAVSGPVSVLRTFEDES
        VF    +R+YV+DP+ +V+F+PLQ+ EDLS++ +PV IL  E K LHNRGI LVKV WR+   EEA  ER   D  A     S +RTFEDES
Subjt:  VFSCIGVRQYVSDPSLIVDFEPLQLIEDLSFKGKPVSILVFETKTLHNRGIRLVKVQWRSQSSEEAACERGRRDEIAVSGPVSVLRTFEDES

XP_022158399.1 uncharacterized protein LOC111024888 [Momordica charantia]1.7e-1251.61Show/hide
Query:  VFSCIGVRQYVSDPSLIVDFEPLQLIEDLSFKGKPVSILVFETKTLHNRGIRLVKVQWRSQSSEEAACERGRRDEIAVSGPVSV-LRTFEDES
        VF    +R+YV DPS ++DFEPLQL E L ++  P+ IL  ETK L NR I LVKV+W +   EEA   R R DEI    P  +  RTFEDES
Subjt:  VFSCIGVRQYVSDPSLIVDFEPLQLIEDLSFKGKPVSILVFETKTLHNRGIRLVKVQWRSQSSEEAACERGRRDEIAVSGPVSV-LRTFEDES

TrEMBL top hitse value%identityAlignment
A0A5A7SMC0 Pol protein2.8e-1360Show/hide
Query:  VFSCIGVRQYVSDPSLIVDFEPLQLIEDLSFKGKPVSILVFETKTLHNRGIRLVKVQWRSQSSEEAACER
        VF    +R+YV+DP+ +VDFEPLQ+ EDLS+K +PV IL  E K LHNRGI LVKV WR+   EEA  ER
Subjt:  VFSCIGVRQYVSDPSLIVDFEPLQLIEDLSFKGKPVSILVFETKTLHNRGIRLVKVQWRSQSSEEAACER

A0A5A7V925 Integrase catalytic domain-containing protein6.6e-1553.26Show/hide
Query:  VFSCIGVRQYVSDPSLIVDFEPLQLIEDLSFKGKPVSILVFETKTLHNRGIRLVKVQWRSQSSEEAACERGRRDEIAVSGPVSVLRTFEDES
        VF    +R+YV+DP+ +V+F+PLQ+ EDLS++ +PV IL  E K LHNRGI LVKV WR+   EEA  ER   D  A     S +RTFEDES
Subjt:  VFSCIGVRQYVSDPSLIVDFEPLQLIEDLSFKGKPVSILVFETKTLHNRGIRLVKVQWRSQSSEEAACERGRRDEIAVSGPVSVLRTFEDES

A0A5A7VHU1 Pol protein1.9e-1450.52Show/hide
Query:  VFSCIGVRQYVSDPSLIVDFEPLQLIEDLSFKGKPVSILVFETKTLHNRGIRLVKVQWRSQSSEEAACERGRRDEIAVSGPVSVLRTFEDESHKKEG
        VF    +R+YVS+P+ +VDFEPLQ+ E+LS++ +PV I   E K L NRGI LVKV WR+   EEA  ER   D  A     S +RTFED+S  K+G
Subjt:  VFSCIGVRQYVSDPSLIVDFEPLQLIEDLSFKGKPVSILVFETKTLHNRGIRLVKVQWRSQSSEEAACERGRRDEIAVSGPVSVLRTFEDESHKKEG

A0A5D3DTZ2 Integrase catalytic domain-containing protein6.6e-1553.26Show/hide
Query:  VFSCIGVRQYVSDPSLIVDFEPLQLIEDLSFKGKPVSILVFETKTLHNRGIRLVKVQWRSQSSEEAACERGRRDEIAVSGPVSVLRTFEDES
        VF    +R+YV+DP+ +V+F+PLQ+ EDLS++ +PV IL  E K LHNRGI LVKV WR+   EEA  ER   D  A     S +RTFEDES
Subjt:  VFSCIGVRQYVSDPSLIVDFEPLQLIEDLSFKGKPVSILVFETKTLHNRGIRLVKVQWRSQSSEEAACERGRRDEIAVSGPVSVLRTFEDES

A0A6J1DZA4 uncharacterized protein LOC1110248888.1e-1351.61Show/hide
Query:  VFSCIGVRQYVSDPSLIVDFEPLQLIEDLSFKGKPVSILVFETKTLHNRGIRLVKVQWRSQSSEEAACERGRRDEIAVSGPVSV-LRTFEDES
        VF    +R+YV DPS ++DFEPLQL E L ++  P+ IL  ETK L NR I LVKV+W +   EEA   R R DEI    P  +  RTFEDES
Subjt:  VFSCIGVRQYVSDPSLIVDFEPLQLIEDLSFKGKPVSILVFETKTLHNRGIRLVKVQWRSQSSEEAACERGRRDEIAVSGPVSV-LRTFEDES

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCGATTTCAGTGGAGTTGTTGTCACACCAGGTGTGGCAACGAAAGCCGTGTGCAGTGTTCTCATGTATCGGTGTGAGGCAGTATGTGTCGGACCCATCGCTCATTGT
GGACTTTGAGCCTTTGCAGCTGATTGAGGATTTGAGCTTCAAGGGGAAGCCTGTGAGTATTCTGGTCTTTGAGACGAAGACGTTGCATAATCGTGGGATCCGTTTGGTAA
AAGTTCAGTGGAGGAGTCAGAGTTCAGAGGAGGCCGCTTGTGAGCGGGGAAGACGGGATGAGATTGCAGTATCCGGTCCTGTTTCAGTCTTAAGGACTTTCGAGGACGAA
AGTCATAAAAAGGAGGGAATATTGTAA
mRNA sequenceShow/hide mRNA sequence
ATGTCGATTTCAGTGGAGTTGTTGTCACACCAGGTGTGGCAACGAAAGCCGTGTGCAGTGTTCTCATGTATCGGTGTGAGGCAGTATGTGTCGGACCCATCGCTCATTGT
GGACTTTGAGCCTTTGCAGCTGATTGAGGATTTGAGCTTCAAGGGGAAGCCTGTGAGTATTCTGGTCTTTGAGACGAAGACGTTGCATAATCGTGGGATCCGTTTGGTAA
AAGTTCAGTGGAGGAGTCAGAGTTCAGAGGAGGCCGCTTGTGAGCGGGGAAGACGGGATGAGATTGCAGTATCCGGTCCTGTTTCAGTCTTAAGGACTTTCGAGGACGAA
AGTCATAAAAAGGAGGGAATATTGTAA
Protein sequenceShow/hide protein sequence
MSISVELLSHQVWQRKPCAVFSCIGVRQYVSDPSLIVDFEPLQLIEDLSFKGKPVSILVFETKTLHNRGIRLVKVQWRSQSSEEAACERGRRDEIAVSGPVSVLRTFEDE
SHKKEGIL