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Sed0016591 (gene) of Chayote v1 genome

Gene IDSed0016591
OrganismSechium edule (Chayote v1)
DescriptionE3 ubiquitin-protein ligase
Genome locationLG11:27758987..27759435
RNA-Seq ExpressionSed0016591
SyntenySed0016591
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6583700.1 hypothetical protein SDJN03_19632, partial [Cucurbita argyrosperma subsp. sororia]2.6e-1572.13Show/hide
Query:  SVSEDSTAAAMVLLGCTGCLVYVMSSKVDLKCPKCNNMTLLDFSNLAEQASRRNVVDMSTD
        S +ED+T + MVLLGCT CL+YVMSSK DLKCPKCNN TLLD  NLA QAS++N+VDMS D
Subjt:  SVSEDSTAAAMVLLGCTGCLVYVMSSKVDLKCPKCNNMTLLDFSNLAEQASRRNVVDMSTD
PON78840.1 E3 ubiquitin-protein ligase [Parasponia andersonii]7.0e-0551.92Show/hide
Query:  KSEPQDLSVSEDSTAAAMVLLGCTGCLVYVMSSKVDLKCPKCNNMTLLDFSN
        ++E + LS  +  TAA MVL+GC  CL+YV+ S  + KCPKC N  LLDF N
Subjt:  KSEPQDLSVSEDSTAAAMVLLGCTGCLVYVMSSKVDLKCPKCNNMTLLDFSN
TXG73550.1 hypothetical protein EZV62_002129 [Acer yangbiense]7.0e-0551.79Show/hide
Query:  LKSEPQDLSV---SEDSTAAAMVLLGCTGCLVYVMSSKVDLKCPKCNNMTLLDFSN
        + SEP+D ++   S   T  +MVL GC  CL+YVM S VD KCPKC +  LLDF N
Subjt:  LKSEPQDLSV---SEDSTAAAMVLLGCTGCLVYVMSSKVDLKCPKCNNMTLLDFSN
XP_022756667.1 uncharacterized protein LOC111304381 [Durio zibethinus]7.0e-0546.88Show/hide
Query:  LKSEPQDLSVSEDST--AAAMVLLGCTGCLVYVMSSKVDLKCPKCNNMTLLDFSNLAEQASRRN
        + SEP D  +   S+  A +MVL+GC  CL+YVM S+VD KCP+C +  LLDF N       RN
Subjt:  LKSEPQDLSVSEDST--AAAMVLLGCTGCLVYVMSSKVDLKCPKCNNMTLLDFSNLAEQASRRN
XP_034688534.1 uncharacterized protein LOC117916554 [Vitis riparia]7.0e-0544.78Show/hide
Query:  ISFNNLKSEPQDLSVSEDSTAAAMVLLGCTGCLVYVMSSKVDLKCPKCNNMTLLDFSNLAEQASRRN
        +S    ++ P  L+  E   A +MVL+GC  CL+YVM S+VD KCPKC +  LLDF N  +    RN
Subjt:  ISFNNLKSEPQDLSVSEDSTAAAMVLLGCTGCLVYVMSSKVDLKCPKCNNMTLLDFSNLAEQASRRN
TrEMBL top hitse value%identityAlignment
A0A1S2YKZ1 uncharacterized protein LOC1015025814.5e-0543.55Show/hide
Query:  SEPQDLSVSEDSTAAAMVLLGCTGCLVYVMSSKVDLKCPKCNNMTLLDFSNLAEQASRRNVV
        SE   +S        AM+L+GCT CL+YVM  ++D KCPKC +  LLDF N  E  S++  +
Subjt:  SEPQDLSVSEDSTAAAMVLLGCTGCLVYVMSSKVDLKCPKCNNMTLLDFSNLAEQASRRNVV
A0A2P5E000 E3 ubiquitin-protein ligase3.4e-0551.92Show/hide
Query:  KSEPQDLSVSEDSTAAAMVLLGCTGCLVYVMSSKVDLKCPKCNNMTLLDFSN
        ++E + LS  +  TAA MVL+GC  CL+YV+ S  + KCPKC N  LLDF N
Subjt:  KSEPQDLSVSEDSTAAAMVLLGCTGCLVYVMSSKVDLKCPKCNNMTLLDFSN
A0A5C7IW75 Uncharacterized protein3.4e-0551.79Show/hide
Query:  LKSEPQDLSV---SEDSTAAAMVLLGCTGCLVYVMSSKVDLKCPKCNNMTLLDFSN
        + SEP+D ++   S   T  +MVL GC  CL+YVM S VD KCPKC +  LLDF N
Subjt:  LKSEPQDLSV---SEDSTAAAMVLLGCTGCLVYVMSSKVDLKCPKCNNMTLLDFSN
A0A6A1WR83 Uncharacterized protein4.5e-0544.78Show/hide
Query:  LKSEPQDLSVSEDST--AAAMVLLGCTGCLVYVMSSKVDLKCPKCNNMTLLDFSNLAEQASRRNVVD
        + SEP++ ++   S+  A +MVL+GC  CL+YVM S VD KCPKC +  LLDF  L E++S++  ++
Subjt:  LKSEPQDLSVSEDST--AAAMVLLGCTGCLVYVMSSKVDLKCPKCNNMTLLDFSNLAEQASRRNVVD
A0A6P5ZVZ0 uncharacterized protein LOC1113043813.4e-0546.88Show/hide
Query:  LKSEPQDLSVSEDST--AAAMVLLGCTGCLVYVMSSKVDLKCPKCNNMTLLDFSNLAEQASRRN
        + SEP D  +   S+  A +MVL+GC  CL+YVM S+VD KCP+C +  LLDF N       RN
Subjt:  LKSEPQDLSVSEDST--AAAMVLLGCTGCLVYVMSSKVDLKCPKCNNMTLLDFSNLAEQASRRN
SwissProt top hitse value%identityAlignment
Q9FNI1 Protein GL2-INTERACTING REPRESSOR 11.5e-0540.62Show/hide
Query:  NNLKSEPQDLSVSEDSTAAAMVLLGCTGCLVYVMSSKVDLKCPKCNNMTLLDFSNLAEQASRRN
        + +  +   +  S      +MVL+GC  CL+YVM S+ D KCPKC +  LLDF  L E A+  N
Subjt:  NNLKSEPQDLSVSEDSTAAAMVLLGCTGCLVYVMSSKVDLKCPKCNNMTLLDFSNLAEQASRRN
Q9SRN4 Protein GL2-INTERACTING REPRESSOR 28.6e-0657.5Show/hide
Query:  EDSTAAAMVLLGCTGCLVYVMSSKVDLKCPKCNNMTLLDF
        E+ T  +MVL+GC  CL+YVM S  D KCPKC +  LLDF
Subjt:  EDSTAAAMVLLGCTGCLVYVMSSKVDLKCPKCNNMTLLDF
Arabidopsis top hitse value%identityAlignment
AT3G11600.1 unknown protein6.1e-0757.5Show/hide
Query:  EDSTAAAMVLLGCTGCLVYVMSSKVDLKCPKCNNMTLLDF
        E+ T  +MVL+GC  CL+YVM S  D KCPKC +  LLDF
Subjt:  EDSTAAAMVLLGCTGCLVYVMSSKVDLKCPKCNNMTLLDF
AT5G06270.1 unknown protein1.0e-0640.62Show/hide
Query:  NNLKSEPQDLSVSEDSTAAAMVLLGCTGCLVYVMSSKVDLKCPKCNNMTLLDFSNLAEQASRRN
        + +  +   +  S      +MVL+GC  CL+YVM S+ D KCPKC +  LLDF  L E A+  N
Subjt:  NNLKSEPQDLSVSEDSTAAAMVLLGCTGCLVYVMSSKVDLKCPKCNNMTLLDFSNLAEQASRRN
AT5G22270.1 unknown protein3.7e-0445.95Show/hide
Query:  AAAMVLLGCTGCLVYVMSS-KVDLKCPKCNNMTLLDF
        A +MV++GC  C++Y+++S + D +CP+CN+  LLDF
Subjt:  AAAMVLLGCTGCLVYVMSS-KVDLKCPKCNNMTLLDF

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGTGGAATTAGCTTCAACAATTTGAAGTCGGAACCACAAGATTTGTCGGTGTCTGAAGACTCTACGGCGGCGGCCATGGTGCTCTTGGGGTGCACTGGATGCCTCGT
GTACGTCATGTCGTCTAAGGTAGACCTCAAGTGTCCCAAATGCAACAACATGACACTACTTGATTTCTCCAATTTGGCCGAACAAGCATCACGGAGAAATGTCGTCGACA
TGTCGACCGACACTGAAAATGATCAGAAGAGGTGTTGA
mRNA sequenceShow/hide mRNA sequence
CTCAATTCCAATTCCTCCCTTGAAGAGCTCTGAATTATGGGTGGAATTAGCTTCAACAATTTGAAGTCGGAACCACAAGATTTGTCGGTGTCTGAAGACTCTACGGCGGC
GGCCATGGTGCTCTTGGGGTGCACTGGATGCCTCGTGTACGTCATGTCGTCTAAGGTAGACCTCAAGTGTCCCAAATGCAACAACATGACACTACTTGATTTCTCCAATT
TGGCCGAACAAGCATCACGGAGAAATGTCGTCGACATGTCGACCGACACTGAAAATGATCAGAAGAGGTGTTGACATGTCGTTAGATATCATACATTATAGATACACTTT
TATGTGTATATCATTTTCGTTTCTGGATTCCTTTAGCCTGCCCTATTATTTTGTTCCATTCTTGTTTTGGCTAGCTATGTTTGCTAGTTTTAATCATGCTATATATATAC
CTATGTCAC
Protein sequenceShow/hide protein sequence
MGGISFNNLKSEPQDLSVSEDSTAAAMVLLGCTGCLVYVMSSKVDLKCPKCNNMTLLDFSNLAEQASRRNVVDMSTDTENDQKRC