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Sed0016605 (gene) of Chayote v1 genome

Gene IDSed0016605
OrganismSechium edule (Chayote v1)
DescriptionLINE-1 retrotransposable element ORF2 protein
Genome locationLG01:14625237..14625560
RNA-Seq ExpressionSed0016605
SyntenySed0016605
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0037436.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]6.3e-1134.29Show/hide
Query:  WNIYPRRPLLEREFDTLASLSHSWKRPSTSPIEDQIQWEHEKNGIFSVNSLRGKLDSRQPIPG---KSIVPTLWNLTIPKKCKIFLWCLFYGGINTSEIS
        WN++PRRPL +RE +   +L    K  + +  ++ + W     G ++  S + +L S +P P    ++   TLW   +PKK K F+W LF+  INT+++ 
Subjt:  WNIYPRRPLLEREFDTLASLSHSWKRPSTSPIEDQIQWEHEKNGIFSVNSLRGKLDSRQPIPG---KSIVPTLWNLTIPKKCKIFLWCLFYGGINTSEIS

Query:  QKRNP
        QKR P
Subjt:  QKRNP

KAA0040037.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]1.3e-0833.02Show/hide
Query:  WNIYPRRPLLEREFDTLASLSHSWKRPSTSPIEDQIQWEHEKNGIFSVNSLRGKL----DSRQPIPGKSIVPTLWNLTIPKKCKIFLWCLFYGGINTSEI
        W++ PRR L E E+   A L +S         +D   W    NG+++V S++  L     S   +  ++    LW  +IPKKC  F+W L Y  +NT+E 
Subjt:  WNIYPRRPLLEREFDTLASLSHSWKRPSTSPIEDQIQWEHEKNGIFSVNSLRGKL----DSRQPIPGKSIVPTLWNLTIPKKCKIFLWCLFYGGINTSEI

Query:  SQKRNP
          KR P
Subjt:  SQKRNP

KAA0041397.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]3.5e-0935.78Show/hide
Query:  WNIYPRRPLLEREFDTLASLSHSWKRPSTSPIED----QIQWEHEKNGIFSVNSLRGKLDSRQPIPGK---SIVPTLWNLTIPKKCKIFLWCLFYGGINT
        WNI+  RPL + E     +L H+ K    +P+ D    +  W+   N IF   S++  L      P     S+  TLW +  PKKCK F+W L +G INT
Subjt:  WNIYPRRPLLEREFDTLASLSHSWKRPSTSPIED----QIQWEHEKNGIFSVNSLRGKLDSRQPIPGK---SIVPTLWNLTIPKKCKIFLWCLFYGGINT

Query:  SEISQKRNP
        ++  QKR P
Subjt:  SEISQKRNP

KAA0044556.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]3.5e-0935.78Show/hide
Query:  WNIYPRRPLLEREFDTLASLSHSWKRPSTSPIED----QIQWEHEKNGIFSVNSLRGKLDSRQPIPGK---SIVPTLWNLTIPKKCKIFLWCLFYGGINT
        WNI+  RPL + E     +L H+ K    +P+ D    +  W+   N IF   S++  L      P     S+  TLW +  PKKCK F+W L +G INT
Subjt:  WNIYPRRPLLEREFDTLASLSHSWKRPSTSPIED----QIQWEHEKNGIFSVNSLRGKLDSRQPIPGK---SIVPTLWNLTIPKKCKIFLWCLFYGGINT

Query:  SEISQKRNP
        ++  QKR P
Subjt:  SEISQKRNP

TYK00226.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]6.3e-1134.29Show/hide
Query:  WNIYPRRPLLEREFDTLASLSHSWKRPSTSPIEDQIQWEHEKNGIFSVNSLRGKLDSRQPIPG---KSIVPTLWNLTIPKKCKIFLWCLFYGGINTSEIS
        WN++PRRPL +RE +   +L    K  + +  ++ + W     G ++  S + +L S +P P    ++   TLW   +PKK K F+W LF+  INT+++ 
Subjt:  WNIYPRRPLLEREFDTLASLSHSWKRPSTSPIEDQIQWEHEKNGIFSVNSLRGKLDSRQPIPG---KSIVPTLWNLTIPKKCKIFLWCLFYGGINTSEIS

Query:  QKRNP
        QKR P
Subjt:  QKRNP

TrEMBL top hitse value%identityAlignment
A0A5A7T5L3 LINE-1 retrotransposable element ORF2 protein3.1e-1134.29Show/hide
Query:  WNIYPRRPLLEREFDTLASLSHSWKRPSTSPIEDQIQWEHEKNGIFSVNSLRGKLDSRQPIPG---KSIVPTLWNLTIPKKCKIFLWCLFYGGINTSEIS
        WN++PRRPL +RE +   +L    K  + +  ++ + W     G ++  S + +L S +P P    ++   TLW   +PKK K F+W LF+  INT+++ 
Subjt:  WNIYPRRPLLEREFDTLASLSHSWKRPSTSPIEDQIQWEHEKNGIFSVNSLRGKLDSRQPIPG---KSIVPTLWNLTIPKKCKIFLWCLFYGGINTSEIS

Query:  QKRNP
        QKR P
Subjt:  QKRNP

A0A5A7TIB8 LINE-1 retrotransposable element ORF2 protein1.7e-0935.78Show/hide
Query:  WNIYPRRPLLEREFDTLASLSHSWKRPSTSPIED----QIQWEHEKNGIFSVNSLRGKLDSRQPIPGK---SIVPTLWNLTIPKKCKIFLWCLFYGGINT
        WNI+  RPL + E     +L H+ K    +P+ D    +  W+   N IF   S++  L      P     S+  TLW +  PKKCK F+W L +G INT
Subjt:  WNIYPRRPLLEREFDTLASLSHSWKRPSTSPIED----QIQWEHEKNGIFSVNSLRGKLDSRQPIPGK---SIVPTLWNLTIPKKCKIFLWCLFYGGINT

Query:  SEISQKRNP
        ++  QKR P
Subjt:  SEISQKRNP

A0A5A7TR15 LINE-1 retrotransposable element ORF2 protein1.7e-0935.78Show/hide
Query:  WNIYPRRPLLEREFDTLASLSHSWKRPSTSPIED----QIQWEHEKNGIFSVNSLRGKLDSRQPIPGK---SIVPTLWNLTIPKKCKIFLWCLFYGGINT
        WNI+  RPL + E     +L H+ K    +P+ D    +  W+   N IF   S++  L      P     S+  TLW +  PKKCK F+W L +G INT
Subjt:  WNIYPRRPLLEREFDTLASLSHSWKRPSTSPIED----QIQWEHEKNGIFSVNSLRGKLDSRQPIPGK---SIVPTLWNLTIPKKCKIFLWCLFYGGINT

Query:  SEISQKRNP
        ++  QKR P
Subjt:  SEISQKRNP

A0A5A7VIU9 LINE-1 retrotransposable element ORF2 protein1.4e-0833.33Show/hide
Query:  GWNIYPRRPLLEREFDTLASLSHSWKRPSTSPIEDQIQWEHEKNGIFSVNSLRGKLDSRQPIPGKS----IVPTLWNLTIPKKCKIFLWCLFYGGINTSE
        GWNI PRRPL ERE     S+  S  +  ++    +  W+   + ++SV S +        IP ++     +  LW   IP+KCK F+W + +  +NT +
Subjt:  GWNIYPRRPLLEREFDTLASLSHSWKRPSTSPIEDQIQWEHEKNGIFSVNSLRGKLDSRQPIPGKS----IVPTLWNLTIPKKCKIFLWCLFYGGINTSE

Query:  ISQKRNPT
          QKRNP+
Subjt:  ISQKRNPT

A0A5D3BPP1 LINE-1 retrotransposable element ORF2 protein3.1e-1134.29Show/hide
Query:  WNIYPRRPLLEREFDTLASLSHSWKRPSTSPIEDQIQWEHEKNGIFSVNSLRGKLDSRQPIPG---KSIVPTLWNLTIPKKCKIFLWCLFYGGINTSEIS
        WN++PRRPL +RE +   +L    K  + +  ++ + W     G ++  S + +L S +P P    ++   TLW   +PKK K F+W LF+  INT+++ 
Subjt:  WNIYPRRPLLEREFDTLASLSHSWKRPSTSPIEDQIQWEHEKNGIFSVNSLRGKLDSRQPIPG---KSIVPTLWNLTIPKKCKIFLWCLFYGGINTSEIS

Query:  QKRNP
        QKR P
Subjt:  QKRNP

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGCGGTGGCTGGAATATATATCCGAGACGCCCCCTCTTGGAGCGTGAATTTGATACCCTTGCTTCATTATCTCATTCTTGGAAAAGACCGTCGACTTCTCCTATTGA
AGACCAAATTCAATGGGAACACGAAAAGAATGGAATATTCAGTGTTAATTCTCTTCGTGGCAAGCTCGATTCTAGACAACCGATCCCTGGCAAATCCATTGTGCCGACGC
TTTGGAACTTAACTATCCCGAAAAAATGCAAAATCTTTCTTTGGTGCCTTTTCTATGGCGGAATTAATACTAGCGAAATATCTCAAAAGAGAAACCCCACCTGA
mRNA sequenceShow/hide mRNA sequence
ATGAGCGGTGGCTGGAATATATATCCGAGACGCCCCCTCTTGGAGCGTGAATTTGATACCCTTGCTTCATTATCTCATTCTTGGAAAAGACCGTCGACTTCTCCTATTGA
AGACCAAATTCAATGGGAACACGAAAAGAATGGAATATTCAGTGTTAATTCTCTTCGTGGCAAGCTCGATTCTAGACAACCGATCCCTGGCAAATCCATTGTGCCGACGC
TTTGGAACTTAACTATCCCGAAAAAATGCAAAATCTTTCTTTGGTGCCTTTTCTATGGCGGAATTAATACTAGCGAAATATCTCAAAAGAGAAACCCCACCTGA
Protein sequenceShow/hide protein sequence
MSGGWNIYPRRPLLEREFDTLASLSHSWKRPSTSPIEDQIQWEHEKNGIFSVNSLRGKLDSRQPIPGKSIVPTLWNLTIPKKCKIFLWCLFYGGINTSEISQKRNPT