; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Sed0016611 (gene) of Chayote v1 genome

Gene IDSed0016611
OrganismSechium edule (Chayote v1)
DescriptionHIG1 domain-containing protein
Genome locationLG08:37762820..37764734
RNA-Seq ExpressionSed0016611
SyntenySed0016611
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
InterPro domainsIPR007667 - Hypoxia induced protein, domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004152465.1 RING-H2 finger protein ATL48 [Cucumis sativus]7.7e-3389.02Show/hide
Query:  MSSEEPNLDEFFVEKNRARNPFVPIGALVTAGVLTAGLISFRQGNSQLGQMLMRARVAVQGATVALMVGTAFYYGDNPWQSS
        MSS+EPNLDEFFVEK RARNP VPIGAL TAGVLTAGLISFR+GNSQLGQMLMRARV VQGATVALMVGTA+YYG+NPW+SS
Subjt:  MSSEEPNLDEFFVEKNRARNPFVPIGALVTAGVLTAGLISFRQGNSQLGQMLMRARVAVQGATVALMVGTAFYYGDNPWQSS

XP_008438139.1 PREDICTED: RING-H2 finger protein ATL48 [Cucumis melo]1.0e-3289.02Show/hide
Query:  MSSEEPNLDEFFVEKNRARNPFVPIGALVTAGVLTAGLISFRQGNSQLGQMLMRARVAVQGATVALMVGTAFYYGDNPWQSS
        MSS+EPNLDEFFVEK RARNP VPIGAL TAGVLTAGLISFR+GNSQLGQ+LMRARV VQGATVALMVGTAFYYG+NPW+SS
Subjt:  MSSEEPNLDEFFVEKNRARNPFVPIGALVTAGVLTAGLISFRQGNSQLGQMLMRARVAVQGATVALMVGTAFYYGDNPWQSS

XP_022954948.1 RING-H2 finger protein ATL48-like [Cucurbita moschata]1.7e-3289.02Show/hide
Query:  MSSEEPNLDEFFVEKNRARNPFVPIGALVTAGVLTAGLISFRQGNSQLGQMLMRARVAVQGATVALMVGTAFYYGDNPWQSS
        MSS EPNLDEFFVEK RARNP VP+GA VTAGVLTAGLISFRQGNSQLGQMLMRARV VQGATVALMVGTAFYYG+NPW+ S
Subjt:  MSSEEPNLDEFFVEKNRARNPFVPIGALVTAGVLTAGLISFRQGNSQLGQMLMRARVAVQGATVALMVGTAFYYGDNPWQSS

XP_023541211.1 RING-H2 finger protein ATL48-like [Cucurbita pepo subsp. pepo]2.6e-3391.46Show/hide
Query:  MSSEEPNLDEFFVEKNRARNPFVPIGALVTAGVLTAGLISFRQGNSQLGQMLMRARVAVQGATVALMVGTAFYYGDNPWQSS
        MSS EPNLDEFFVEK RARNP VP+GALVTAGVLTAGLISFRQGNSQLGQMLMRARV VQGATVALMVGTAFYYGDNPW+ S
Subjt:  MSSEEPNLDEFFVEKNRARNPFVPIGALVTAGVLTAGLISFRQGNSQLGQMLMRARVAVQGATVALMVGTAFYYGDNPWQSS

XP_038895243.1 RING-H2 finger protein ATL48-like [Benincasa hispida]2.4e-3492.68Show/hide
Query:  MSSEEPNLDEFFVEKNRARNPFVPIGALVTAGVLTAGLISFRQGNSQLGQMLMRARVAVQGATVALMVGTAFYYGDNPWQSS
        MSSEEPNLDEFFVEK RARNP VP+GALVTAGVLTAGLISFRQGNSQLGQMLMRARV VQGATVALMVGTAFYYG+NPW+SS
Subjt:  MSSEEPNLDEFFVEKNRARNPFVPIGALVTAGVLTAGLISFRQGNSQLGQMLMRARVAVQGATVALMVGTAFYYGDNPWQSS

TrEMBL top hitse value%identityAlignment
A0A0A0LTF8 HIG1 domain-containing protein3.7e-3389.02Show/hide
Query:  MSSEEPNLDEFFVEKNRARNPFVPIGALVTAGVLTAGLISFRQGNSQLGQMLMRARVAVQGATVALMVGTAFYYGDNPWQSS
        MSS+EPNLDEFFVEK RARNP VPIGAL TAGVLTAGLISFR+GNSQLGQMLMRARV VQGATVALMVGTA+YYG+NPW+SS
Subjt:  MSSEEPNLDEFFVEKNRARNPFVPIGALVTAGVLTAGLISFRQGNSQLGQMLMRARVAVQGATVALMVGTAFYYGDNPWQSS

A0A1S3AVM7 RING-H2 finger protein ATL484.9e-3389.02Show/hide
Query:  MSSEEPNLDEFFVEKNRARNPFVPIGALVTAGVLTAGLISFRQGNSQLGQMLMRARVAVQGATVALMVGTAFYYGDNPWQSS
        MSS+EPNLDEFFVEK RARNP VPIGAL TAGVLTAGLISFR+GNSQLGQ+LMRARV VQGATVALMVGTAFYYG+NPW+SS
Subjt:  MSSEEPNLDEFFVEKNRARNPFVPIGALVTAGVLTAGLISFRQGNSQLGQMLMRARVAVQGATVALMVGTAFYYGDNPWQSS

A0A5A7UHA1 RING-H2 finger protein ATL484.9e-3389.02Show/hide
Query:  MSSEEPNLDEFFVEKNRARNPFVPIGALVTAGVLTAGLISFRQGNSQLGQMLMRARVAVQGATVALMVGTAFYYGDNPWQSS
        MSS+EPNLDEFFVEK RARNP VPIGAL TAGVLTAGLISFR+GNSQLGQ+LMRARV VQGATVALMVGTAFYYG+NPW+SS
Subjt:  MSSEEPNLDEFFVEKNRARNPFVPIGALVTAGVLTAGLISFRQGNSQLGQMLMRARVAVQGATVALMVGTAFYYGDNPWQSS

A0A6J1GSJ9 RING-H2 finger protein ATL48-like8.3e-3389.02Show/hide
Query:  MSSEEPNLDEFFVEKNRARNPFVPIGALVTAGVLTAGLISFRQGNSQLGQMLMRARVAVQGATVALMVGTAFYYGDNPWQSS
        MSS EPNLDEFFVEK RARNP VP+GA VTAGVLTAGLISFRQGNSQLGQMLMRARV VQGATVALMVGTAFYYG+NPW+ S
Subjt:  MSSEEPNLDEFFVEKNRARNPFVPIGALVTAGVLTAGLISFRQGNSQLGQMLMRARVAVQGATVALMVGTAFYYGDNPWQSS

A0A6J1K3J5 RING-H2 finger protein ATL48-like2.4e-3289.02Show/hide
Query:  MSSEEPNLDEFFVEKNRARNPFVPIGALVTAGVLTAGLISFRQGNSQLGQMLMRARVAVQGATVALMVGTAFYYGDNPWQSS
        MSS E NLDEFFVEK RARNP VP+GALVTAGVLTAGLISFRQGNSQLGQMLMRARV VQGATVALMVGTAFYYG+NPW+ S
Subjt:  MSSEEPNLDEFFVEKNRARNPFVPIGALVTAGVLTAGLISFRQGNSQLGQMLMRARVAVQGATVALMVGTAFYYGDNPWQSS

SwissProt top hitse value%identityAlignment
Q4VC39 Putative HIG1 domain family member 2B4.0e-0847.14Show/hide
Query:  SEEPNLDEFFVEKNRARNPFVPIGALVTAGVLTAGLISFRQGNSQLGQMLMRARVAVQGATV-ALMVGTA
        S      E F+ K R  NP VPIG L TA VLT GL  F QGNSQ  +++M  ++A QG T+ A+++G A
Subjt:  SEEPNLDEFFVEKNRARNPFVPIGALVTAGVLTAGLISFRQGNSQLGQMLMRARVAVQGATV-ALMVGTA

Q6CBQ8 Respiratory supercomplex factor 1, mitochondrial4.4e-0745Show/hide
Query:  PFVPIGALVTAGVLTAGLISFRQGNSQLGQMLMRARVAVQGATVALMVGTAFYYGDNPWQ
        P VP+G L T G L     + R GN +    +  ARVA QG TVA ++G A YYG +P Q
Subjt:  PFVPIGALVTAGVLTAGLISFRQGNSQLGQMLMRARVAVQGATVALMVGTAFYYGDNPWQ

Q7X843 RING-H2 finger protein ATL483.7e-3077.5Show/hide
Query:  MSSEEPNLDEFFVEKNRARNPFVPIGALVTAGVLTAGLISFRQGNSQLGQMLMRARVAVQGATVALMVGTAFYYGDNPWQ
        MSS EP++++ F EK R RNP VP+GAL+TAGVLTAGLISFR+GNSQLGQ+LMRARV VQGATVALMVGT +YYGDNPW+
Subjt:  MSSEEPNLDEFFVEKNRARNPFVPIGALVTAGVLTAGLISFRQGNSQLGQMLMRARVAVQGATVALMVGTAFYYGDNPWQ

Q9BW72 HIG1 domain family member 2A, mitochondrial7.3e-1057.14Show/hide
Query:  EFFVEKNRARNPFVPIGALVTAGVLTAGLISFRQGNSQLGQMLMRARVAVQGATV-ALMVGTA
        E FV K R  NP VPIG L TA  LT GL SF +GNSQ  Q++MR R+A QG TV A+++G A
Subjt:  EFFVEKNRARNPFVPIGALVTAGVLTAGLISFRQGNSQLGQMLMRARVAVQGATV-ALMVGTA

Q9CQJ1 HIG1 domain family member 2A8.9e-0847.14Show/hide
Query:  SEEPNLDEFFVEKNRARNPFVPIGALVTAGVLTAGLISFRQGNSQLGQMLMRARVAVQGAT-VALMVGTA
        S      E F+ K R  NP VPIG L TA  LT GL  F +G S   Q++MR R+A QG T VA+++G A
Subjt:  SEEPNLDEFFVEKNRARNPFVPIGALVTAGVLTAGLISFRQGNSQLGQMLMRARVAVQGAT-VALMVGTA

Arabidopsis top hitse value%identityAlignment
AT3G48030.1 hypoxia-responsive family protein / zinc finger (C3HC4-type RING finger) family protein2.6e-3177.5Show/hide
Query:  MSSEEPNLDEFFVEKNRARNPFVPIGALVTAGVLTAGLISFRQGNSQLGQMLMRARVAVQGATVALMVGTAFYYGDNPWQ
        MSS EP++++ F EK R RNP VP+GAL+TAGVLTAGLISFR+GNSQLGQ+LMRARV VQGATVALMVGT +YYGDNPW+
Subjt:  MSSEEPNLDEFFVEKNRARNPFVPIGALVTAGVLTAGLISFRQGNSQLGQMLMRARVAVQGATVALMVGTAFYYGDNPWQ


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGCTCAGAGGAACCCAATTTGGACGAATTCTTCGTAGAGAAGAACCGCGCCAGAAACCCATTTGTCCCCATCGGTGCTCTTGTCACTGCTGGAGTTCTCACTGCTGG
GTTAATCAGCTTTAGACAAGGAAACTCCCAATTGGGGCAGATGCTAATGAGAGCTCGTGTCGCTGTTCAAGGTGCTACAGTTGCACTCATGGTTGGCACGGCTTTCTACT
ATGGCGACAATCCCTGGCAATCGAGTTAA
mRNA sequenceShow/hide mRNA sequence
ATTGAATCTGAAACGGCATCACAATGAGCTCAGAGGAACCCAATTTGGACGAATTCTTCGTAGAGAAGAACCGCGCCAGAAACCCATTTGTCCCCATCGGTGCTCTTGTC
ACTGCTGGAGTTCTCACTGCTGGGTTAATCAGCTTTAGACAAGGAAACTCCCAATTGGGGCAGATGCTAATGAGAGCTCGTGTCGCTGTTCAAGGTGCTACAGTTGCACT
CATGGTTGGCACGGCTTTCTACTATGGCGACAATCCCTGGCAATCGAGTTAAATTTCTATGTATGGCTCTTTATGATTTTTTTTTTTCATCTTAGTATCTTGTTTTACTT
CGAGGGATTTCGGTGTCGTTGTCTTTCCATCTTTCTTATTGGTATAATGACATGTTAATCAGTGATTTGAACAACATCAAATAATTCTTCAGGGAAAGCAAGTGTATTAT
GTGTTCGTTCATAGGGCATAGTTGTGTTGCCTTCAAAGATGTAAATCTTGGTATTATGTTGGGAACATTGAATTATAAAAGAAAATCATTGGATATATTTTCAGTATCTT
ACATCTTACTTCGATAAACATCCATATTCGCAACTTCATTTGGAGAAGGAGATTTGAACATGTAACCTCATGGTTACTAGATCGTAGTGGAGTTGTGCTTTTTTTGGCAT
CCATATATTGTATCGTATATATGCTCGTGCTGTCTACACTGAAGGGCCGAAATATGATGGAGTATCTCATTTATTCTAATTGTCTTGTTCTCAACTTTATGCTGAACATA
TGGCATAGTTATTTAGCGCTCTTCATTCAATGGAGATGGGAACGGGACAGAAATGTTATAAGCTAGACAAGTGGATGTTTCACTTCCTTTCTTCCGTTCTCTATCCATTC
CACATGGTTTCTATTTGGCAGCATTGAAGTTGTGGCTGTCGATATGCAATTTCTACATATCGTTTTCATGTCGAGATCAAGAGATAAATACTTTTTTATGAAATTTCGAC
TCGAGATCTGTCGCTGCATCTTCTTTGGACTCAACAAATGGGAATGTCTCATTATGAGGTGTATTTGTACAGATGAATGATGGTATGGTATGTACATTGTATGATTAATT
AGAAAGACCTTTTCTGACCGACC
Protein sequenceShow/hide protein sequence
MSSEEPNLDEFFVEKNRARNPFVPIGALVTAGVLTAGLISFRQGNSQLGQMLMRARVAVQGATVALMVGTAFYYGDNPWQSS