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Sed0016632 (gene) of Chayote v1 genome

Gene IDSed0016632
OrganismSechium edule (Chayote v1)
DescriptionHelicase C-terminal domain-containing protein
Genome locationLG04:34330358..34331065
RNA-Seq ExpressionSed0016632
SyntenySed0016632
Gene Ontology termsGO:0005622 - intracellular (cellular component)
InterPro domainsIPR040381 - Uncharacterized protein At4g14450-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6593848.1 putative protein, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia]1.5e-2566.39Show/hide
Query:  MADSQRRSSGTGAAQRRQQQQPSRLQRRAPATLQINRSSADWNVAIPLLSPLVSPSSPTP----THDSAPTSAS--------------SQPEKPPVFKKW
        MA+SQRR SGT A    ++QQPSRLQRRAPA+LQI+RS  DW VAIPLLSPLVSPSSPT     T DS   S+S              S+PEKPPVFKKW
Subjt:  MADSQRRSSGTGAAQRRQQQQPSRLQRRAPATLQINRSSADWNVAIPLLSPLVSPSSPTP----THDSAPTSAS--------------SQPEKPPVFKKW

Query:  QHPAAPFHYDSASRAPR-FVPV
        QHPAAPFHYDS SRAPR FVPV
Subjt:  QHPAAPFHYDSASRAPR-FVPV

XP_022138670.1 uncharacterized protein At4g14450, chloroplastic-like [Momordica charantia]4.7e-2773.15Show/hide
Query:  MADSQRRSSGTGAAQRRQQQQPSRLQRRAPATLQINRSSADWNVAIPLLSPLVSPSSPTPTHDSAPTSASSQ---PEKP--PVFKKWQHPAAPFHYDSAS
        MAD+QRR+SG G+   R+QQQPSRLQRRAPA+LQI+RS  DW VAIPLLSPLVSPSSPT   +S   S SSQ   PEKP  PV KKWQHPAAPFHYDS  
Subjt:  MADSQRRSSGTGAAQRRQQQQPSRLQRRAPATLQINRSSADWNVAIPLLSPLVSPSSPTPTHDSAPTSASSQ---PEKP--PVFKKWQHPAAPFHYDSAS

Query:  RAPRFVPV
        RAPRFVPV
Subjt:  RAPRFVPV

XP_022930471.1 uncharacterized protein At4g14450, chloroplastic-like [Cucurbita moschata]6.7e-2668.07Show/hide
Query:  MADSQRRSSGTGAAQRRQQQQPSRLQRRAPATLQINRSSADWNVAIPLLSPLVSPSSPTP----THDSAPTSAS-----------SQPEKPPVFKKWQHP
        MA+SQRR SGT A    ++QQPSRLQRRAPA+LQI+RS  DW VAIPLLSPLVSPSSPT     T DS   S+S           S+PEKPPVFKKWQHP
Subjt:  MADSQRRSSGTGAAQRRQQQQPSRLQRRAPATLQINRSSADWNVAIPLLSPLVSPSSPTP----THDSAPTSAS-----------SQPEKPPVFKKWQHP

Query:  AAPFHYDSASRAPR-FVPV
        AAPFHYDS SRAPR FVPV
Subjt:  AAPFHYDSASRAPR-FVPV

XP_023000559.1 uncharacterized protein At4g14450, chloroplastic-like [Cucurbita maxima]2.6e-2566.12Show/hide
Query:  MADSQRRSSGTGAAQRRQQQQPSRLQRRAPATLQINRSSADWNVAIPLLSPLVSPSSPTP----THDSAPTSAS-------------SQPEKPPVFKKWQ
        MA+SQRR+SG  A    ++QQPSRLQRRAPA+LQI+RS  DW VAIPLLSPLVSPSSPT     T DS   S+S             S+PEKPPVFKKWQ
Subjt:  MADSQRRSSGTGAAQRRQQQQPSRLQRRAPATLQINRSSADWNVAIPLLSPLVSPSSPTP----THDSAPTSAS-------------SQPEKPPVFKKWQ

Query:  HPAAPFHYDSASRAPR-FVPV
        HPAAPFHYDS SRAPR FVPV
Subjt:  HPAAPFHYDSASRAPR-FVPV

XP_038875425.1 uncharacterized protein At4g14450, chloroplastic-like [Benincasa hispida]2.3e-2668.97Show/hide
Query:  MADSQRRSSGTGAAQRRQQQQPSRLQRRAPATLQINRSSADWNVAIPLLSPLVSPSSP------TPTHDSAPTSAS-------SQPEKPPVFKKWQHPAA
        MADS RR+SG   A  R  QQPSRLQRRAPA+LQINRS  DW VAIPLLSPLVSPSSP      TP    A +S+S       S+PEKPPVFKKWQHPAA
Subjt:  MADSQRRSSGTGAAQRRQQQQPSRLQRRAPATLQINRSSADWNVAIPLLSPLVSPSSP------TPTHDSAPTSAS-------SQPEKPPVFKKWQHPAA

Query:  PFHYDSASRAPRFVPV
        PFHYDS  RAPRFVPV
Subjt:  PFHYDSASRAPRFVPV

TrEMBL top hitse value%identityAlignment
A0A0A0LLJ8 Uncharacterized protein2.0e-2061.68Show/hide
Query:  PSRLQRRAPATLQINRSSADWNVAIPLLSPLVSPSS----------PTPTHDSAPTSAS---------------SQPEKPPVFKKWQHPAAPFHYDSASR
        PSRLQRRAPA+LQINRS  DW VAIPLLSPLVSPSS          P     S+ TS+S               S PEK PVFKKWQHPAAPFHYDS +R
Subjt:  PSRLQRRAPATLQINRSSADWNVAIPLLSPLVSPSS----------PTPTHDSAPTSAS---------------SQPEKPPVFKKWQHPAAPFHYDSASR

Query:  APRFVPV
        APRFVPV
Subjt:  APRFVPV

A0A1S3CDB1 uncharacterized protein At4g14450, chloroplastic-like6.3e-2257.58Show/hide
Query:  MADSQRRSSGTGAAQRRQQQQPSRLQRRAPATLQINRSSADWNVAIPLLSPLVSPSSP------TPTHDSAPTSASS-----------------------
        MADS RR+S T     R  QQPSRLQRRAPA+LQINRS  DW VAIPLLSPLVSPSSP      TP    A +++SS                       
Subjt:  MADSQRRSSGTGAAQRRQQQQPSRLQRRAPATLQINRSSADWNVAIPLLSPLVSPSSP------TPTHDSAPTSASS-----------------------

Query:  QPEKPPVFKKWQHPAAPFHYDSASRAPRFVPV
        + EK PVFKKWQHPAAPFHYDS  RAPRFVPV
Subjt:  QPEKPPVFKKWQHPAAPFHYDSASRAPRFVPV

A0A6J1CA35 uncharacterized protein At4g14450, chloroplastic-like2.3e-2773.15Show/hide
Query:  MADSQRRSSGTGAAQRRQQQQPSRLQRRAPATLQINRSSADWNVAIPLLSPLVSPSSPTPTHDSAPTSASSQ---PEKP--PVFKKWQHPAAPFHYDSAS
        MAD+QRR+SG G+   R+QQQPSRLQRRAPA+LQI+RS  DW VAIPLLSPLVSPSSPT   +S   S SSQ   PEKP  PV KKWQHPAAPFHYDS  
Subjt:  MADSQRRSSGTGAAQRRQQQQPSRLQRRAPATLQINRSSADWNVAIPLLSPLVSPSSPTPTHDSAPTSASSQ---PEKP--PVFKKWQHPAAPFHYDSAS

Query:  RAPRFVPV
        RAPRFVPV
Subjt:  RAPRFVPV

A0A6J1ER11 uncharacterized protein At4g14450, chloroplastic-like3.3e-2668.07Show/hide
Query:  MADSQRRSSGTGAAQRRQQQQPSRLQRRAPATLQINRSSADWNVAIPLLSPLVSPSSPTP----THDSAPTSAS-----------SQPEKPPVFKKWQHP
        MA+SQRR SGT A    ++QQPSRLQRRAPA+LQI+RS  DW VAIPLLSPLVSPSSPT     T DS   S+S           S+PEKPPVFKKWQHP
Subjt:  MADSQRRSSGTGAAQRRQQQQPSRLQRRAPATLQINRSSADWNVAIPLLSPLVSPSSPTP----THDSAPTSAS-----------SQPEKPPVFKKWQHP

Query:  AAPFHYDSASRAPR-FVPV
        AAPFHYDS SRAPR FVPV
Subjt:  AAPFHYDSASRAPR-FVPV

A0A6J1KKB8 uncharacterized protein At4g14450, chloroplastic-like1.2e-2566.12Show/hide
Query:  MADSQRRSSGTGAAQRRQQQQPSRLQRRAPATLQINRSSADWNVAIPLLSPLVSPSSPTP----THDSAPTSAS-------------SQPEKPPVFKKWQ
        MA+SQRR+SG  A    ++QQPSRLQRRAPA+LQI+RS  DW VAIPLLSPLVSPSSPT     T DS   S+S             S+PEKPPVFKKWQ
Subjt:  MADSQRRSSGTGAAQRRQQQQPSRLQRRAPATLQINRSSADWNVAIPLLSPLVSPSSPTP----THDSAPTSAS-------------SQPEKPPVFKKWQ

Query:  HPAAPFHYDSASRAPR-FVPV
        HPAAPFHYDS SRAPR FVPV
Subjt:  HPAAPFHYDSASRAPR-FVPV

SwissProt top hitse value%identityAlignment
Q6NN02 Uncharacterized protein At4g14450, chloroplastic6.3e-1143.64Show/hide
Query:  MADSQRRSSGTGAAQRRQQQQPSRLQRRAPATLQINRSSADWNVAIPLLSPLVS--PSSPTPTHDSAPTSASSQP-----EKPPVFKKWQHPAAPFHYDS
        MA + +R+S + A+  RQ    S+LQRRAP+ +    S ++WNVAIPLLSPL     SS   +H   P + +  P     +K PVFKKWQHPA+PF Y+ 
Subjt:  MADSQRRSSGTGAAQRRQQQQPSRLQRRAPATLQINRSSADWNVAIPLLSPLVS--PSSPTPTHDSAPTSASSQP-----EKPPVFKKWQHPAAPFHYDS

Query:  ASRAPRFVPV
         +  P F+ V
Subjt:  ASRAPRFVPV

Arabidopsis top hitse value%identityAlignment
AT1G04330.1 unknown protein6.3e-1449.47Show/hide
Query:  MADSQRRSSGTGAAQRRQQQQPSRLQRRAPATLQINRSSADWNVAIPLLSPLVS-PSSPTPTHDSAPTSASSQPEKPPVFKKWQHPAAPFHYDSA
        M+ + R  SG+G       ++ SRLQRRAP  L+IN   A+W VAIPLLSP  S P  P             + EKPPVFKKWQHPAAPF+Y  A
Subjt:  MADSQRRSSGTGAAQRRQQQQPSRLQRRAPATLQINRSSADWNVAIPLLSPLVS-PSSPTPTHDSAPTSASSQPEKPPVFKKWQHPAAPFHYDSA

AT3G23170.1 unknown protein3.1e-1349.45Show/hide
Query:  QQQPSRLQRRAPATLQINRSSA--DWNVAIPLLSPLVSPSSPTPTHDSAPT----SASSQPEKPPVFKKWQHPAAPFHYDSASRAPRFVPV
        ++QPSRL +R PA   +  + A  +WN AIPLLSPL      +P  D  P     S +   EK PVFKKWQHPAAPF+Y+S++  P FVPV
Subjt:  QQQPSRLQRRAPATLQINRSSA--DWNVAIPLLSPLVSPSSPTPTHDSAPT----SASSQPEKPPVFKKWQHPAAPFHYDSASRAPRFVPV

AT4G14450.1 unknown protein4.5e-1243.64Show/hide
Query:  MADSQRRSSGTGAAQRRQQQQPSRLQRRAPATLQINRSSADWNVAIPLLSPLVS--PSSPTPTHDSAPTSASSQP-----EKPPVFKKWQHPAAPFHYDS
        MA + +R+S + A+  RQ    S+LQRRAP+ +    S ++WNVAIPLLSPL     SS   +H   P + +  P     +K PVFKKWQHPA+PF Y+ 
Subjt:  MADSQRRSSGTGAAQRRQQQQPSRLQRRAPATLQINRSSADWNVAIPLLSPLVS--PSSPTPTHDSAPTSASSQP-----EKPPVFKKWQHPAAPFHYDS

Query:  ASRAPRFVPV
         +  P F+ V
Subjt:  ASRAPRFVPV


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCCGACTCACAGCGGCGATCCTCCGGCACCGGCGCCGCTCAACGGCGGCAACAGCAGCAGCCGAGCCGCCTCCAGCGCCGTGCTCCGGCCACCCTCCAAATCAACCG
CTCCAGCGCCGACTGGAACGTCGCCATCCCTCTCTTATCCCCACTCGTCTCTCCCTCCTCGCCGACCCCCACTCACGACTCAGCACCCACTTCCGCCTCTTCTCAGCCGG
AGAAGCCGCCGGTTTTTAAGAAATGGCAGCACCCGGCGGCGCCTTTCCATTACGACTCCGCTTCTAGGGCTCCCAGATTCGTGCCCGTTTAG
mRNA sequenceShow/hide mRNA sequence
GGAGCATCAAGATGGTGCTTGCTTCCCACATGACCCCTTGTCTCCTTATATAATTACCCCTCTTCTCCGCCTTATTTTCTCCACAATTCTTCATTCATTCCCCAATAATT
AAAATCCCTCTTTTTTCTCTCTCTCTATATCTCATGGCCGACTCACAGCGGCGATCCTCCGGCACCGGCGCCGCTCAACGGCGGCAACAGCAGCAGCCGAGCCGCCTCCA
GCGCCGTGCTCCGGCCACCCTCCAAATCAACCGCTCCAGCGCCGACTGGAACGTCGCCATCCCTCTCTTATCCCCACTCGTCTCTCCCTCCTCGCCGACCCCCACTCACG
ACTCAGCACCCACTTCCGCCTCTTCTCAGCCGGAGAAGCCGCCGGTTTTTAAGAAATGGCAGCACCCGGCGGCGCCTTTCCATTACGACTCCGCTTCTAGGGCTCCCAGA
TTCGTGCCCGTTTAGATTTTCCTTTTCTTTTCTTTTATTTAATAAACTCCACTTCATTGGTTCAACCATTTGTAATCTCTAGATCTAACGGTCTGTTTTTCGCCAGCTTT
TCGATTGCATCTTCTGCTTAACCACACTTGATTATTTGTACACATCATTCCACTTTTTTTCTTTCCTTTCTTTTTTACCTGCCTCTCCTTATCTTACCTACTTCTGACTA
CTTGTCTTATACATACCTCCTAATATAATGAAAGAATAATAATGGGTC
Protein sequenceShow/hide protein sequence
MADSQRRSSGTGAAQRRQQQQPSRLQRRAPATLQINRSSADWNVAIPLLSPLVSPSSPTPTHDSAPTSASSQPEKPPVFKKWQHPAAPFHYDSASRAPRFVPV