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Sed0016697 (gene) of Chayote v1 genome

Gene IDSed0016697
OrganismSechium edule (Chayote v1)
DescriptionRNase H domain-containing protein
Genome locationLG10:28774081..28774839
RNA-Seq ExpressionSed0016697
SyntenySed0016697
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily
IPR044730 - Ribonuclease H-like domain, plant type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
TXG47194.1 hypothetical protein EZV62_026488 [Acer yangbiense]3.7e-1433.56Show/hide
Query:  FKLNVDAALKSEGVAIGLGVVLRNHNGDGICAAGTFIHQYLDPFSAEALTLLYGLRLVKKRGFHRVVVEYDAKSLIEAVKKKNWSLSVPRAILDEIRSIV
        FK+N DAAL  +G + G+GVV+RN  G  + ++         P  AEAL +L GLRL K  GF   V+E DA ++++ + +     S    ++D+I    
Subjt:  FKLNVDAALKSEGVAIGLGVVLRNHNGDGICAAGTFIHQYLDPFSAEALTLLYGLRLVKKRGFHRVVVEYDAKSLIEAVKKKNWSLSVPRAILDEIRSIV

Query:  KEEWVVSISFTPRITNNVAHEIARWACDSRISLEWVGEFPPWIENV
        ++    S    PR+ N VAH +A+ A  +     W G+ P  +EN+
Subjt:  KEEWVVSISFTPRITNNVAHEIARWACDSRISLEWVGEFPPWIENV

XP_021863260.1 uncharacterized protein LOC110802140 [Spinacia oleracea]5.8e-1538.13Show/hide
Query:  EGVAIGLGVVLRNHNGDGICAAGTFIHQYLDPFSAEALTLLYGLRLVKKRGFHRVVVEYDAKSLIEAVKKKNWSLSVPRAILDEIRSIVKEEWVVSISFT
        +GV IGLGVV+R+  G+ I  A   +H    P  AEAL + YGL + K+ GF ++++E DA +++ AVKK + SLS  + +LD+I          +I   
Subjt:  EGVAIGLGVVLRNHNGDGICAAGTFIHQYLDPFSAEALTLLYGLRLVKKRGFHRVVVEYDAKSLIEAVKKKNWSLSVPRAILDEIRSIVKEEWVVSISFT

Query:  PRITNNVAHEIARWACDSRISLEWVGEFPPWIENVNNLD
         R +N VAH +ARW   S      +G FPP I  +  +D
Subjt:  PRITNNVAHEIARWACDSRISLEWVGEFPPWIENVNNLD

XP_024178556.2 uncharacterized protein LOC112184522 [Rosa chinensis]2.6e-1538.03Show/hide
Query:  KLNVDAALKSEGVAIGLGVVLRNHNGDGICAAGTFIHQYLDPFSAEALTLLYGLRLVKKRGFHRVVVEYDAKSLIEAVKKKNWSLSVPRAILDEIRSIVK
        KLNVD A  S     G G VLRN  GD I A        L P  AE L L YGL  +      +VVVE D    ++A+      LS   A++ +I+ +V 
Subjt:  KLNVDAALKSEGVAIGLGVVLRNHNGDGICAAGTFIHQYLDPFSAEALTLLYGLRLVKKRGFHRVVVEYDAKSLIEAVKKKNWSLSVPRAILDEIRSIVK

Query:  EEWVVSISFTPRITNNVAHEIARWACDSRISLEWVGEFPPWI
            V++ FTPR  N VAH +A ++ DS I L+W G  P ++
Subjt:  EEWVVSISFTPRITNNVAHEIARWACDSRISLEWVGEFPPWI

XP_038704726.1 uncharacterized protein LOC120000672 [Tripterygium wilfordii]7.5e-1533.8Show/hide
Query:  KLNVDAALKSEGVAIGLGVVLRNHNGDGICAAGTFIHQYLDPFSAEALTLLYGLRLVKKRGFHRVVVEYDAKSLIEAVKKKNWSLSVPRAILDEIRSIVK
        KL+VD A+ +E  AIG+G V+R+HNG    A    +     P   +A  L+ G +L    G   +++E D+  L+ A++ + + L+    ILD+IRS++ 
Subjt:  KLNVDAALKSEGVAIGLGVVLRNHNGDGICAAGTFIHQYLDPFSAEALTLLYGLRLVKKRGFHRVVVEYDAKSLIEAVKKKNWSLSVPRAILDEIRSIVK

Query:  EEWVVSISFTPRITNNVAHEIARWACDSRISLEWVGEFPPWI
            VS+ +T R+ N VAH++AR + +    + W+GE P +I
Subjt:  EEWVVSISFTPRITNNVAHEIARWACDSRISLEWVGEFPPWI

XP_038722039.1 uncharacterized protein LOC120014190 [Tripterygium wilfordii]3.4e-1536.99Show/hide
Query:  LNYFKLNVDAALKSEGVAIGLGVVLRNHNGDGICAAGTFIHQYLDPFSAEALTLLYGLRLVKKRGFHRVVVEYDAKSLIEAVKKKNWSLSVPRAILDEIR
        LN FKLNVD A+ +   +IG+G VLR+H G+   +    I+    P  AEA T+L G++L  + GF   VVE D+   I A+   +  LSV   ++D +R
Subjt:  LNYFKLNVDAALKSEGVAIGLGVVLRNHNGDGICAAGTFIHQYLDPFSAEALTLLYGLRLVKKRGFHRVVVEYDAKSLIEAVKKKNWSLSVPRAILDEIR

Query:  SIVKEEWVVSISFTPRITNNVAHEIARWACDSRISLEWVGEFPPWI
         + +    V   F  R+ N+VAH +AR A        W+ +FPP I
Subjt:  SIVKEEWVVSISFTPRITNNVAHEIARWACDSRISLEWVGEFPPWI

TrEMBL top hitse value%identityAlignment
A0A2P6QEG4 Putative ribonuclease H-like domain-containing protein6.9e-1437.5Show/hide
Query:  KLNVDAALKSEGVAIGLGVVLRNHNGDGICAAGTFIHQYLDPFSAEALTLLYGLRLVKKRGFHRVVVEYDAKSLIEAVKKKNWSLSVPRAILDEIRSIVK
        KLNVD    S     G G VLRN  GD I A        L P  AE L L YGL  +      +VV+E D    ++A+      LS   A++ +I+ +V 
Subjt:  KLNVDAALKSEGVAIGLGVVLRNHNGDGICAAGTFIHQYLDPFSAEALTLLYGLRLVKKRGFHRVVVEYDAKSLIEAVKKKNWSLSVPRAILDEIRSIVK

Query:  EEWVVSISFTPRITNNVAHEIARWACDSRISLEWVG
            V++ FTPR  N VAH +A ++ DS I L+W G
Subjt:  EEWVVSISFTPRITNNVAHEIARWACDSRISLEWVG

A0A5C7GQX3 RNase H domain-containing protein1.8e-1433.56Show/hide
Query:  FKLNVDAALKSEGVAIGLGVVLRNHNGDGICAAGTFIHQYLDPFSAEALTLLYGLRLVKKRGFHRVVVEYDAKSLIEAVKKKNWSLSVPRAILDEIRSIV
        FK+N DAAL  +G + G+GVV+RN  G  + ++         P  AEAL +L GLRL K  GF   V+E DA ++++ + +     S    ++D+I    
Subjt:  FKLNVDAALKSEGVAIGLGVVLRNHNGDGICAAGTFIHQYLDPFSAEALTLLYGLRLVKKRGFHRVVVEYDAKSLIEAVKKKNWSLSVPRAILDEIRSIV

Query:  KEEWVVSISFTPRITNNVAHEIARWACDSRISLEWVGEFPPWIENV
        ++    S    PR+ N VAH +A+ A  +     W G+ P  +EN+
Subjt:  KEEWVVSISFTPRITNNVAHEIARWACDSRISLEWVGEFPPWIENV

A0A6P5S7Q3 uncharacterized protein LOC1107532619.0e-1432.45Show/hide
Query:  FKLNVDAALKSEGVAIGLGVVLRNHNGDGICAAGTFIHQYLDPFSAEALTLLYGLRLVKKRGFHRVVVEYDAKSLIEAVKK-KNWSLSVPRAILDEIRSI
        +KLNVDAA   E    G+G V+RN  G+ + A    +        AE + L +G+   +  GF   ++E D++ ++  VKK +  S +    ++D+I+  
Subjt:  FKLNVDAALKSEGVAIGLGVVLRNHNGDGICAAGTFIHQYLDPFSAEALTLLYGLRLVKKRGFHRVVVEYDAKSLIEAVKK-KNWSLSVPRAILDEIRSI

Query:  VKEEWVVSISFTPRITNNVAHEIARWACDSRISLEWVGEFPPWIENVNNLD
        ++    V+ISF+PR  N VAH +AR A +    + W+ E P W+++V N D
Subjt:  VKEEWVVSISFTPRITNNVAHEIARWACDSRISLEWVGEFPPWIENVNNLD

A0A803MDH5 Uncharacterized protein1.2e-1333.99Show/hide
Query:  NYFKLNVDAALKSEGVAIGLGVVLRNHNGDGICAAGTFIHQYLDPFSAEALTLLYGLRLVKKRGFHRVVVEYDAKSLIEAVKKKNWSLSVPRAILDEIRS
        ++ KLNVD  +  EG+    G V+RN  G+ + A    + +   P  +EA+TLL GLR+  + GF R++VE D   L+ A++ +  S S    I D+I  
Subjt:  NYFKLNVDAALKSEGVAIGLGVVLRNHNGDGICAAGTFIHQYLDPFSAEALTLLYGLRLVKKRGFHRVVVEYDAKSLIEAVKKKNWSLSVPRAILDEIRS

Query:  IVKEEWVVSISFTPRITNNVAHEIAR---WACDSRISLEWVGEFPPWIENVNN
        +      V  SF  R+ N VAHE+A    W    +I   WV  FP  +  +N+
Subjt:  IVKEEWVVSISFTPRITNNVAHEIAR---WACDSRISLEWVGEFPPWIENVNN

A0A803Q0L5 Uncharacterized protein1.5e-1332.86Show/hide
Query:  LNYFKLNVDAALKSEGVAIGLGVVLRNHNGDGICAAGTFIHQYLDPFSAEALTLLYGLRLVKKRGFHRVVVEYDAKSLIEAVKKKNWSLSVPRAILDEIR
        L   K+NVDA +KS G   G+G V+R+  G  + A+   +HQ L P   E   +L GL++   R  HR  +E D    ++ +++K+        +LD+IR
Subjt:  LNYFKLNVDAALKSEGVAIGLGVVLRNHNGDGICAAGTFIHQYLDPFSAEALTLLYGLRLVKKRGFHRVVVEYDAKSLIEAVKKKNWSLSVPRAILDEIR

Query:  SIVKEEWVVSISFTPRITNNVAHEIARWACDSRISLEWVG
        +++  + V  ISF  R  N VA+ +A +A  ++ S  W+G
Subjt:  SIVKEEWVVSISFTPRITNNVAHEIARWACDSRISLEWVG

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTACTTTCCATCTTTCGTGGATCTGTTGACATTTGTGAATCGATTAGTCGGTTTGTGAATTCTTCTTCTTCCCATAACCTCAATCGTTTTTGTTTGAATTACTTCAA
GCTAAACGTTGACGCTGCCTTAAAATCAGAAGGGGTAGCTATTGGTCTTGGAGTAGTCCTTCGAAACCATAATGGCGACGGAATCTGTGCTGCTGGTACCTTCATACATC
AATACCTAGATCCCTTTTCTGCTGAAGCTTTAACTTTGTTGTATGGTCTGCGTTTGGTCAAGAAAAGGGGGTTTCATAGAGTGGTTGTTGAATATGATGCAAAGAGCCTT
ATTGAAGCTGTCAAGAAGAAGAATTGGAGCCTTTCAGTTCCTAGAGCAATTTTGGATGAAATTAGATCTATCGTCAAGGAGGAATGGGTTGTTTCGATTTCCTTTACTCC
TAGAATCACAAACAATGTAGCTCATGAAATAGCCCGTTGGGCTTGTGATAGTAGGATTAGTCTTGAATGGGTTGGGGAATTTCCACCTTGGATTGAAAATGTAAACAATT
TGGATGGGGGCAATGGTTTTTGA
mRNA sequenceShow/hide mRNA sequence
ATGGTACTTTCCATCTTTCGTGGATCTGTTGACATTTGTGAATCGATTAGTCGGTTTGTGAATTCTTCTTCTTCCCATAACCTCAATCGTTTTTGTTTGAATTACTTCAA
GCTAAACGTTGACGCTGCCTTAAAATCAGAAGGGGTAGCTATTGGTCTTGGAGTAGTCCTTCGAAACCATAATGGCGACGGAATCTGTGCTGCTGGTACCTTCATACATC
AATACCTAGATCCCTTTTCTGCTGAAGCTTTAACTTTGTTGTATGGTCTGCGTTTGGTCAAGAAAAGGGGGTTTCATAGAGTGGTTGTTGAATATGATGCAAAGAGCCTT
ATTGAAGCTGTCAAGAAGAAGAATTGGAGCCTTTCAGTTCCTAGAGCAATTTTGGATGAAATTAGATCTATCGTCAAGGAGGAATGGGTTGTTTCGATTTCCTTTACTCC
TAGAATCACAAACAATGTAGCTCATGAAATAGCCCGTTGGGCTTGTGATAGTAGGATTAGTCTTGAATGGGTTGGGGAATTTCCACCTTGGATTGAAAATGTAAACAATT
TGGATGGGGGCAATGGTTTTTGA
Protein sequenceShow/hide protein sequence
MVLSIFRGSVDICESISRFVNSSSSHNLNRFCLNYFKLNVDAALKSEGVAIGLGVVLRNHNGDGICAAGTFIHQYLDPFSAEALTLLYGLRLVKKRGFHRVVVEYDAKSL
IEAVKKKNWSLSVPRAILDEIRSIVKEEWVVSISFTPRITNNVAHEIARWACDSRISLEWVGEFPPWIENVNNLDGGNGF