; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Sed0016722 (gene) of Chayote v1 genome

Gene IDSed0016722
OrganismSechium edule (Chayote v1)
DescriptionRNase H domain-containing protein
Genome locationLG06:11946164..11952902
RNA-Seq ExpressionSed0016722
SyntenySed0016722
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily
IPR044730 - Ribonuclease H-like domain, plant type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
PON90739.1 Ribonuclease H-like domain containing protein [Trema orientale]1.4e-1230.99Show/hide
Query:  MDKIEWVKDYFSDFQSANQGAVRSSHYAGPPRDLNAGSCWRPSEPCRFVLNVHAACSKSWNRVGLGVVIRDHCGKCVLVSANFQHSQLNAFSTEALALLF
        MD   W  +Y  +FQ+A Q     S     PR +     W+P     + LNV AA S+S   VG G +IRD  G  +   A   H+ L   + E  AL F
Subjt:  MDKIEWVKDYFSDFQSANQGAVRSSHYAGPPRDLNAGSCWRPSEPCRFVLNVHAACSKSWNRVGLGVVIRDHCGKCVLVSANFQHSQLNAFSTEALALLF

Query:  GLRLGVSSGLMELYVEMDAKTVIEAVNGGTLLDSELGAILSEIRFLLSSNCFTGIRFVPRSQNKVAHGIVR
        G+            VE DA+ V+ A+       SELG  L ++  LL++     + +VPR  N   +G+ +
Subjt:  GLRLGVSSGLMELYVEMDAKTVIEAVNGGTLLDSELGAILSEIRFLLSSNCFTGIRFVPRSQNKVAHGIVR

TXG53482.1 hypothetical protein EZV62_022651 [Acer yangbiense]6.1e-1333.33Show/hide
Query:  DKIEWVKDYFSDFQSANQGAVRSSHYAGPPRDLNAGSCWRPSEPCRFVLNVHAACSKSWNRVGLGVVIRDHCGKCVLVSANFQHSQLNAFSTEALALLFG
        D   W  DY  +F+ AN   +     AG PR + A   W   +   F +N  AA   + N+VG+G +IRD  GK ++ +     +  +    EA+A+LFG
Subjt:  DKIEWVKDYFSDFQSANQGAVRSSHYAGPPRDLNAGSCWRPSEPCRFVLNVHAACSKSWNRVGLGVVIRDHCGKCVLVSANFQHSQLNAFSTEALALLFG

Query:  LRLGVSSGLMELYVEMDAKTVIEAVNGGTLLDSELGAILSEIRFLLSSNCFTGIRFVPRSQN
        LR+ V  GL+   +E DA++V+  +  G+ + +++G +LS+IR +L+S     I FV R+ N
Subjt:  LRLGVSSGLMELYVEMDAKTVIEAVNGGTLLDSELGAILSEIRFLLSSNCFTGIRFVPRSQN

TXG57115.1 hypothetical protein EZV62_018428 [Acer yangbiense]2.7e-1332.56Show/hide
Query:  DKIEWVKDYFSDFQSANQGAVRSSHYAGPPRDLNA--GSCWRPSEPCRFVLNVHAACSKSWNRVGLGVVIRDHCGKCVLVSANFQHSQLNAFSTEALALL
        D + W  D+ +DF+SA  G  +   + G    +N+  G  WRP +   + +N  AA   ++ RVG GV+IRDH G  +  S+ F  +  +    EA+A+ 
Subjt:  DKIEWVKDYFSDFQSANQGAVRSSHYAGPPRDLNA--GSCWRPSEPCRFVLNVHAACSKSWNRVGLGVVIRDHCGKCVLVSANFQHSQLNAFSTEALALL

Query:  FGLRLGVSSGLMELYVEMDAKTVIEAVNGGTLLDSELGAILSEIRFLLSSNCFTGIRFVPRSQNKVAHGIVR
         GL     S L+   V +DA+ V+  +N    L SE+G ++S IR LL       + F PR  + VAH + +
Subjt:  FGLRLGVSSGLMELYVEMDAKTVIEAVNGGTLLDSELGAILSEIRFLLSSNCFTGIRFVPRSQNKVAHGIVR

TXG63243.1 hypothetical protein EZV62_010237 [Acer yangbiense]5.1e-1231.1Show/hide
Query:  KDYFSDFQSANQGAVRSSHYAGPPRDLNAGSCWRPSEPCRFVLNVHAACSKSWNRVGLGVVIRDHCGKCVLVSANFQHSQLNAFSTEALALLFGLRLGVS
        + + +DF S  +G        G  R     + WRP EP  + +N  AA + +   +GLG+VIRD+ G  +   +    +  +A   E +A+  GL     
Subjt:  KDYFSDFQSANQGAVRSSHYAGPPRDLNAGSCWRPSEPCRFVLNVHAACSKSWNRVGLGVVIRDHCGKCVLVSANFQHSQLNAFSTEALALLFGLRLGVS

Query:  SGLMELYVEMDAKTVIEAVNGGTLLDSELGAILSEIRFLLSSNCFTGIRFVPRSQNKVAHGIVR
         GL    +E DA  V++ ++ G+ LDS  G IL+EI  L+++     +  VPR  N VAHG+ +
Subjt:  SGLMELYVEMDAKTVIEAVNGGTLLDSELGAILSEIRFLLSSNCFTGIRFVPRSQNKVAHGIVR

TXG69190.1 hypothetical protein EZV62_004125 [Acer yangbiense]5.1e-1229.48Show/hide
Query:  DKIEWVKDYFSDFQSA---NQGAVRSSHYAGPPRDLNAGSCWRPSEPCRFVLNVHAACSKSWNRVGLGVVIRDHCGKCVLVSANFQHSQLNAFSTEALAL
        D ++W   +  DF++A   + G+V     A  P+       W+PS    + +N  A         G+GVVIRD  G  +          L   + EA+A+
Subjt:  DKIEWVKDYFSDFQSA---NQGAVRSSHYAGPPRDLNAGSCWRPSEPCRFVLNVHAACSKSWNRVGLGVVIRDHCGKCVLVSANFQHSQLNAFSTEALAL

Query:  LFGLRLGVSSGLMELYVEMDAKTVIEAVNGGTLLDSELGAILSEIRFLLSSNCFTGIRFVPRSQNKVAHGIVR
        L G RL + +GL    +E D+ +V+  +N   +L +E+G +L +I  + S++ F+ + FVPR  N VAH + +
Subjt:  LFGLRLGVSSGLMELYVEMDAKTVIEAVNGGTLLDSELGAILSEIRFLLSSNCFTGIRFVPRSQNKVAHGIVR

TrEMBL top hitse value%identityAlignment
A0A2P5EYY2 Ribonuclease H-like domain containing protein6.6e-1330.99Show/hide
Query:  MDKIEWVKDYFSDFQSANQGAVRSSHYAGPPRDLNAGSCWRPSEPCRFVLNVHAACSKSWNRVGLGVVIRDHCGKCVLVSANFQHSQLNAFSTEALALLF
        MD   W  +Y  +FQ+A Q     S     PR +     W+P     + LNV AA S+S   VG G +IRD  G  +   A   H+ L   + E  AL F
Subjt:  MDKIEWVKDYFSDFQSANQGAVRSSHYAGPPRDLNAGSCWRPSEPCRFVLNVHAACSKSWNRVGLGVVIRDHCGKCVLVSANFQHSQLNAFSTEALALLF

Query:  GLRLGVSSGLMELYVEMDAKTVIEAVNGGTLLDSELGAILSEIRFLLSSNCFTGIRFVPRSQNKVAHGIVR
        G+            VE DA+ V+ A+       SELG  L ++  LL++     + +VPR  N   +G+ +
Subjt:  GLRLGVSSGLMELYVEMDAKTVIEAVNGGTLLDSELGAILSEIRFLLSSNCFTGIRFVPRSQNKVAHGIVR

A0A5C7GQX3 RNase H domain-containing protein3.3e-1231.76Show/hide
Query:  IEWVKDYFSDFQSANQGAVRSSHYAGPPRDLNAGSC--WRPSEPCRFVLNVHAACSKSWNRVGLGVVIRDHCGKCVLVSANFQHSQLNAFSTEALALLFG
        +EW  D+  +F        R S     PR ++      W       F +N  AA +   N  G+GVVIR+  G+ +L S     +  +    EALA+L G
Subjt:  IEWVKDYFSDFQSANQGAVRSSHYAGPPRDLNAGSC--WRPSEPCRFVLNVHAACSKSWNRVGLGVVIRDHCGKCVLVSANFQHSQLNAFSTEALALLFG

Query:  LRLGVSSGLMELYVEMDAKTVIEAVNGGTLLDSELGAILSEIRFLLSSNCFTGIRFVPRSQNKVAHGIVR
        LRL    G     +E DA TV++ +     L S++G ++ +I F      F   R VPR  NKVAHG+ +
Subjt:  LRLGVSSGLMELYVEMDAKTVIEAVNGGTLLDSELGAILSEIRFLLSSNCFTGIRFVPRSQNKVAHGIVR

A0A5C7HA98 CCHC-type domain-containing protein2.9e-1333.33Show/hide
Query:  DKIEWVKDYFSDFQSANQGAVRSSHYAGPPRDLNAGSCWRPSEPCRFVLNVHAACSKSWNRVGLGVVIRDHCGKCVLVSANFQHSQLNAFSTEALALLFG
        D   W  DY  +F+ AN   +     AG PR + A   W   +   F +N  AA   + N+VG+G +IRD  GK ++ +     +  +    EA+A+LFG
Subjt:  DKIEWVKDYFSDFQSANQGAVRSSHYAGPPRDLNAGSCWRPSEPCRFVLNVHAACSKSWNRVGLGVVIRDHCGKCVLVSANFQHSQLNAFSTEALALLFG

Query:  LRLGVSSGLMELYVEMDAKTVIEAVNGGTLLDSELGAILSEIRFLLSSNCFTGIRFVPRSQN
        LR+ V  GL+   +E DA++V+  +  G+ + +++G +LS+IR +L+S     I FV R+ N
Subjt:  LRLGVSSGLMELYVEMDAKTVIEAVNGGTLLDSELGAILSEIRFLLSSNCFTGIRFVPRSQN

A0A5C7HK03 RNase H domain-containing protein1.3e-1332.56Show/hide
Query:  DKIEWVKDYFSDFQSANQGAVRSSHYAGPPRDLNA--GSCWRPSEPCRFVLNVHAACSKSWNRVGLGVVIRDHCGKCVLVSANFQHSQLNAFSTEALALL
        D + W  D+ +DF+SA  G  +   + G    +N+  G  WRP +   + +N  AA   ++ RVG GV+IRDH G  +  S+ F  +  +    EA+A+ 
Subjt:  DKIEWVKDYFSDFQSANQGAVRSSHYAGPPRDLNA--GSCWRPSEPCRFVLNVHAACSKSWNRVGLGVVIRDHCGKCVLVSANFQHSQLNAFSTEALALL

Query:  FGLRLGVSSGLMELYVEMDAKTVIEAVNGGTLLDSELGAILSEIRFLLSSNCFTGIRFVPRSQNKVAHGIVR
         GL     S L+   V +DA+ V+  +N    L SE+G ++S IR LL       + F PR  + VAH + +
Subjt:  FGLRLGVSSGLMELYVEMDAKTVIEAVNGGTLLDSELGAILSEIRFLLSSNCFTGIRFVPRSQNKVAHGIVR

A0A5C7IIT4 Uncharacterized protein2.5e-1229.48Show/hide
Query:  DKIEWVKDYFSDFQSA---NQGAVRSSHYAGPPRDLNAGSCWRPSEPCRFVLNVHAACSKSWNRVGLGVVIRDHCGKCVLVSANFQHSQLNAFSTEALAL
        D ++W   +  DF++A   + G+V     A  P+       W+PS    + +N  A         G+GVVIRD  G  +          L   + EA+A+
Subjt:  DKIEWVKDYFSDFQSA---NQGAVRSSHYAGPPRDLNAGSCWRPSEPCRFVLNVHAACSKSWNRVGLGVVIRDHCGKCVLVSANFQHSQLNAFSTEALAL

Query:  LFGLRLGVSSGLMELYVEMDAKTVIEAVNGGTLLDSELGAILSEIRFLLSSNCFTGIRFVPRSQNKVAHGIVR
        L G RL + +GL    +E D+ +V+  +N   +L +E+G +L +I  + S++ F+ + FVPR  N VAH + +
Subjt:  LFGLRLGVSSGLMELYVEMDAKTVIEAVNGGTLLDSELGAILSEIRFLLSSNCFTGIRFVPRSQNKVAHGIVR

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT3G09510.1 Ribonuclease H-like superfamily protein6.5e-0527.94Show/hide
Query:  GVVIRDHCGKCVLVSANFQHSQLNAFSTEALALLFGLRLGVSSGLMELYVEMDAKTVIEAVNGGTLLDSELGAILSEIRFLLSSNCFTGIRFVPRSQNKV
        G +IR+H G  +   +       N    E  ALL  L+     G  ++++E D +T+I  +N G    S L   L +I F  +        F+ R  NK+
Subjt:  GVVIRDHCGKCVLVSANFQHSQLNAFSTEALALLFGLRLGVSSGLMELYVEMDAKTVIEAVNGGTLLDSELGAILSEIRFLLSSNCFTGIRFVPRSQNKV

Query:  AHGIVR-GTNVAVLISQSGD---WDAEKLEELFCRD
        AH + + G   +   S SG    W    L+  FC D
Subjt:  AHGIVR-GTNVAVLISQSGD---WDAEKLEELFCRD


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAATGTAATGGACAAAATTGAATGGGTAAAAGATTACTTCTCGGATTTTCAGAGTGCTAATCAAGGAGCTGTTCGTTCTTCTCATTATGCGGGTCCTCCTAGAGACCT
GAATGCCGGTAGTTGTTGGCGCCCGTCTGAGCCTTGTAGGTTTGTCTTGAACGTACATGCAGCATGCTCAAAAAGTTGGAACCGAGTTGGCCTTGGGGTCGTCATCCGGG
ATCATTGCGGTAAGTGTGTGTTGGTGTCGGCTAATTTTCAGCACTCCCAGCTAAATGCATTCTCAACTGAAGCTCTAGCCTTGTTGTTTGGCCTGAGATTGGGGGTGAGT
AGTGGCTTGATGGAATTATATGTTGAAATGGATGCTAAAACTGTTATTGAAGCTGTAAATGGAGGCACCCTGTTGGATTCGGAGTTGGGAGCCATCTTGAGTGAAATTCG
TTTTCTCCTTTCCTCTAATTGTTTTACTGGTATTAGGTTTGTACCTAGATCTCAAAACAAAGTTGCTCATGGTATTGTTCGAGGAACTAATGTAGCAGTGTTGATTTCCC
AATCCGGTGATTGGGATGCTGAGAAGTTAGAGGAGCTTTTCTGCAGAGATGATGTAGAGGAGGTTTTGAAGATGTCTTGTACAAGCCCCCCTTAG
mRNA sequenceShow/hide mRNA sequence
ATGAATGTAATGGACAAAATTGAATGGGTAAAAGATTACTTCTCGGATTTTCAGAGTGCTAATCAAGGAGCTGTTCGTTCTTCTCATTATGCGGGTCCTCCTAGAGACCT
GAATGCCGGTAGTTGTTGGCGCCCGTCTGAGCCTTGTAGGTTTGTCTTGAACGTACATGCAGCATGCTCAAAAAGTTGGAACCGAGTTGGCCTTGGGGTCGTCATCCGGG
ATCATTGCGGTAAGTGTGTGTTGGTGTCGGCTAATTTTCAGCACTCCCAGCTAAATGCATTCTCAACTGAAGCTCTAGCCTTGTTGTTTGGCCTGAGATTGGGGGTGAGT
AGTGGCTTGATGGAATTATATGTTGAAATGGATGCTAAAACTGTTATTGAAGCTGTAAATGGAGGCACCCTGTTGGATTCGGAGTTGGGAGCCATCTTGAGTGAAATTCG
TTTTCTCCTTTCCTCTAATTGTTTTACTGGTATTAGGTTTGTACCTAGATCTCAAAACAAAGTTGCTCATGGTATTGTTCGAGGAACTAATGTAGCAGTGTTGATTTCCC
AATCCGGTGATTGGGATGCTGAGAAGTTAGAGGAGCTTTTCTGCAGAGATGATGTAGAGGAGGTTTTGAAGATGTCTTGTACAAGCCCCCCTTAG
Protein sequenceShow/hide protein sequence
MNVMDKIEWVKDYFSDFQSANQGAVRSSHYAGPPRDLNAGSCWRPSEPCRFVLNVHAACSKSWNRVGLGVVIRDHCGKCVLVSANFQHSQLNAFSTEALALLFGLRLGVS
SGLMELYVEMDAKTVIEAVNGGTLLDSELGAILSEIRFLLSSNCFTGIRFVPRSQNKVAHGIVRGTNVAVLISQSGDWDAEKLEELFCRDDVEEVLKMSCTSPP