; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Sed0016780 (gene) of Chayote v1 genome

Gene IDSed0016780
OrganismSechium edule (Chayote v1)
DescriptionPhotosystem II 10 kDa polypeptide, chloroplastic
Genome locationLG05:36244680..36248335
RNA-Seq ExpressionSed0016780
SyntenySed0016780
Gene Ontology termsGO:0010270 - photosystem II oxygen evolving complex assembly (biological process)
GO:0009535 - chloroplast thylakoid membrane (cellular component)
GO:0009654 - photosystem II oxygen evolving complex (cellular component)
GO:0016021 - integral component of membrane (cellular component)
GO:0003729 - mRNA binding (molecular function)
InterPro domainsIPR006814 - Photosystem II PsbR


Homology Show/hide homology
GenBank top hitse value%identityAlignment
AFK39810.1 unknown [Lotus japonicus]3.3e-4978.95Show/hide
Query:  SSLSLKSSDFAIAARG-RVLPSIARTNSSIKVVASGGKKIKTDTPYGIGGGMNLRNGVDASGRKPTGKGVYQYVDKYGANVDGYSPIYNTDEWSATGDVY
        +S+SLK + F++     R LPS++R+++S +VVASGGKKIKTDTPYG GGGMNLRNGVDASGRKP GKGVYQYVDKYGANVDGYSPIY+T +WS TGDVY
Subjt:  SSLSLKSSDFAIAARG-RVLPSIARTNSSIKVVASGGKKIKTDTPYGIGGGMNLRNGVDASGRKPTGKGVYQYVDKYGANVDGYSPIYNTDEWSATGDVY

Query:  AGGTTGLAIWAVTLFGLLAGGALLVYNTSALAQ
        AGGTTGLAIWAVTL GLLAGGALLVYNTSAL+Q
Subjt:  AGGTTGLAIWAVTLFGLLAGGALLVYNTSALAQ

CAB4277098.1 unnamed protein product [Prunus armeniaca]1.9e-4980Show/hide
Query:  SSLSLKSSDFAI---AARGRVLPSIARTNSSIKVVASGGKKIKTDTPYGIGGGMNLRNGVDASGRKPTGKGVYQYVDKYGANVDGYSPIYNTDEWSATGD
        +S+SLK S F +   A RG  LPS+ART+SS KV ASGGKKIKTDTPYG GGGMNL++G DASGRKPTGKGVYQ+VDKYGANVDGYSPIYN DEWS +GD
Subjt:  SSLSLKSSDFAI---AARGRVLPSIARTNSSIKVVASGGKKIKTDTPYGIGGGMNLRNGVDASGRKPTGKGVYQYVDKYGANVDGYSPIYNTDEWSATGD

Query:  VYAGGTTGLAIWAVTLFGLLAGGALLVYNTSALAQ
        VYAGGTTGLAIWAVTL G+LAGGALLVYNTSAL+Q
Subjt:  VYAGGTTGLAIWAVTLFGLLAGGALLVYNTSALAQ

VVA34501.1 PREDICTED: photosystem II [Prunus dulcis]7.3e-4979.26Show/hide
Query:  SSLSLKSSDFAI---AARGRVLPSIARTNSSIKVVASGGKKIKTDTPYGIGGGMNLRNGVDASGRKPTGKGVYQYVDKYGANVDGYSPIYNTDEWSATGD
        +S+SLK S F +   A RG  LPS+ART+SS KV ASGGKKIKTDTPYG GGGMNL++G DASGRKPTGKGVYQ+VDKYGANVDGYSPIYN DEWS +GD
Subjt:  SSLSLKSSDFAI---AARGRVLPSIARTNSSIKVVASGGKKIKTDTPYGIGGGMNLRNGVDASGRKPTGKGVYQYVDKYGANVDGYSPIYNTDEWSATGD

Query:  VYAGGTTGLAIWAVTLFGLLAGGALLVYNTSALAQ
        VYAGG TGLAIWAVTL G+LAGGALLVYNTSAL+Q
Subjt:  VYAGGTTGLAIWAVTLFGLLAGGALLVYNTSALAQ

XP_007212214.1 photosystem II 10 kDa polypeptide, chloroplastic [Prunus persica]7.3e-4979.26Show/hide
Query:  SSLSLKSSDFAI---AARGRVLPSIARTNSSIKVVASGGKKIKTDTPYGIGGGMNLRNGVDASGRKPTGKGVYQYVDKYGANVDGYSPIYNTDEWSATGD
        +S+SLK S F +   A RG  LPS+ART+SS KV ASGGKKIKTDTPYG GGGMNL++G DASGRKPTGKGVYQ+VDKYGANVDGYSPIYN DEWS +GD
Subjt:  SSLSLKSSDFAI---AARGRVLPSIARTNSSIKVVASGGKKIKTDTPYGIGGGMNLRNGVDASGRKPTGKGVYQYVDKYGANVDGYSPIYNTDEWSATGD

Query:  VYAGGTTGLAIWAVTLFGLLAGGALLVYNTSALAQ
        VYAGG TGLAIWAVTL G+LAGGALLVYNTSAL+Q
Subjt:  VYAGGTTGLAIWAVTLFGLLAGGALLVYNTSALAQ

XP_038899014.1 photosystem II 10 kDa polypeptide, chloroplastic-like [Benincasa hispida]6.4e-5383.45Show/hide
Query:  ASSLSLKSSDFAI------AARGRVLPSIARTNSSIKVVASGGKKIKTDTPYGIGGGMNLRNGVDASGRKPTGKGVYQYVDKYGANVDGYSPIYNTDEWS
        ASSLSLK S+FA+        R   +PS+ART+SS KV ASGGKKIKTD PYGIGGGMNLRNGVDASGRKPTGKGVYQYVDKYGANVDGYSPIYNTDEWS
Subjt:  ASSLSLKSSDFAI------AARGRVLPSIARTNSSIKVVASGGKKIKTDTPYGIGGGMNLRNGVDASGRKPTGKGVYQYVDKYGANVDGYSPIYNTDEWS

Query:  ATGDVYAGGTTGLAIWAVTLFGLLAGGALLVYNTSALAQ
         TGDVYA GTTGLAIWAVTL GLLAGGALLVYNTSALAQ
Subjt:  ATGDVYAGGTTGLAIWAVTLFGLLAGGALLVYNTSALAQ

TrEMBL top hitse value%identityAlignment
A0A1U7Z3M3 Photosystem II 10 kDa polypeptide, chloroplastic7.9e-4980.3Show/hide
Query:  SSLSLKSSDFAIAARGRVLPSIARTNSSIKVVASGGKKIKTDTPYGIGGGMNLRNGVDASGRKPTGKGVYQYVDKYGANVDGYSPIYNTDEWSATGDVYA
        SSLSLK S F   +  R LPS+AR +SS KV ASGGKKIKT+TPYG GGGMNL+NG+DASGRKPTGKGVYQ+VDKYGANVDGYSPIY  DEWS +GDVY 
Subjt:  SSLSLKSSDFAIAARGRVLPSIARTNSSIKVVASGGKKIKTDTPYGIGGGMNLRNGVDASGRKPTGKGVYQYVDKYGANVDGYSPIYNTDEWSATGDVYA

Query:  GGTTGLAIWAVTLFGLLAGGALLVYNTSALAQ
        GGTTGLAIWAVTL GLL GGALLVYNTSALAQ
Subjt:  GGTTGLAIWAVTLFGLLAGGALLVYNTSALAQ

A0A5E4G3Z3 Photosystem II 10 kDa polypeptide, chloroplastic3.6e-4979.26Show/hide
Query:  SSLSLKSSDFAI---AARGRVLPSIARTNSSIKVVASGGKKIKTDTPYGIGGGMNLRNGVDASGRKPTGKGVYQYVDKYGANVDGYSPIYNTDEWSATGD
        +S+SLK S F +   A RG  LPS+ART+SS KV ASGGKKIKTDTPYG GGGMNL++G DASGRKPTGKGVYQ+VDKYGANVDGYSPIYN DEWS +GD
Subjt:  SSLSLKSSDFAI---AARGRVLPSIARTNSSIKVVASGGKKIKTDTPYGIGGGMNLRNGVDASGRKPTGKGVYQYVDKYGANVDGYSPIYNTDEWSATGD

Query:  VYAGGTTGLAIWAVTLFGLLAGGALLVYNTSALAQ
        VYAGG TGLAIWAVTL G+LAGGALLVYNTSAL+Q
Subjt:  VYAGGTTGLAIWAVTLFGLLAGGALLVYNTSALAQ

A0A6J5USX5 Photosystem II 10 kDa polypeptide, chloroplastic9.4e-5080Show/hide
Query:  SSLSLKSSDFAI---AARGRVLPSIARTNSSIKVVASGGKKIKTDTPYGIGGGMNLRNGVDASGRKPTGKGVYQYVDKYGANVDGYSPIYNTDEWSATGD
        +S+SLK S F +   A RG  LPS+ART+SS KV ASGGKKIKTDTPYG GGGMNL++G DASGRKPTGKGVYQ+VDKYGANVDGYSPIYN DEWS +GD
Subjt:  SSLSLKSSDFAI---AARGRVLPSIARTNSSIKVVASGGKKIKTDTPYGIGGGMNLRNGVDASGRKPTGKGVYQYVDKYGANVDGYSPIYNTDEWSATGD

Query:  VYAGGTTGLAIWAVTLFGLLAGGALLVYNTSALAQ
        VYAGGTTGLAIWAVTL G+LAGGALLVYNTSAL+Q
Subjt:  VYAGGTTGLAIWAVTLFGLLAGGALLVYNTSALAQ

I3SHR8 Photosystem II 10 kDa polypeptide, chloroplastic1.6e-4978.95Show/hide
Query:  SSLSLKSSDFAIAARG-RVLPSIARTNSSIKVVASGGKKIKTDTPYGIGGGMNLRNGVDASGRKPTGKGVYQYVDKYGANVDGYSPIYNTDEWSATGDVY
        +S+SLK + F++     R LPS++R+++S +VVASGGKKIKTDTPYG GGGMNLRNGVDASGRKP GKGVYQYVDKYGANVDGYSPIY+T +WS TGDVY
Subjt:  SSLSLKSSDFAIAARG-RVLPSIARTNSSIKVVASGGKKIKTDTPYGIGGGMNLRNGVDASGRKPTGKGVYQYVDKYGANVDGYSPIYNTDEWSATGDVY

Query:  AGGTTGLAIWAVTLFGLLAGGALLVYNTSALAQ
        AGGTTGLAIWAVTL GLLAGGALLVYNTSAL+Q
Subjt:  AGGTTGLAIWAVTLFGLLAGGALLVYNTSALAQ

M5WVP2 Photosystem II 10 kDa polypeptide, chloroplastic3.6e-4979.26Show/hide
Query:  SSLSLKSSDFAI---AARGRVLPSIARTNSSIKVVASGGKKIKTDTPYGIGGGMNLRNGVDASGRKPTGKGVYQYVDKYGANVDGYSPIYNTDEWSATGD
        +S+SLK S F +   A RG  LPS+ART+SS KV ASGGKKIKTDTPYG GGGMNL++G DASGRKPTGKGVYQ+VDKYGANVDGYSPIYN DEWS +GD
Subjt:  SSLSLKSSDFAI---AARGRVLPSIARTNSSIKVVASGGKKIKTDTPYGIGGGMNLRNGVDASGRKPTGKGVYQYVDKYGANVDGYSPIYNTDEWSATGD

Query:  VYAGGTTGLAIWAVTLFGLLAGGALLVYNTSALAQ
        VYAGG TGLAIWAVTL G+LAGGALLVYNTSAL+Q
Subjt:  VYAGGTTGLAIWAVTLFGLLAGGALLVYNTSALAQ

SwissProt top hitse value%identityAlignment
P06183 Photosystem II 10 kDa polypeptide, chloroplastic3.4e-4978.03Show/hide
Query:  SSLSLKSSDFAIAARGRVLPSIARTNSSIKVVASGGKKIKTDTPYGIGGGMNLRNGVDASGRKPTGKGVYQYVDKYGANVDGYSPIYNTDEWSATGDVYA
        SSLSLK +        + LPS+AR++SS KVVASG KK+KTD PYGI G M LR+GVDASGRKP GKGVYQYVDKYGANVDGYSPIYNTDEWS +GDVY 
Subjt:  SSLSLKSSDFAIAARGRVLPSIARTNSSIKVVASGGKKIKTDTPYGIGGGMNLRNGVDASGRKPTGKGVYQYVDKYGANVDGYSPIYNTDEWSATGDVYA

Query:  GGTTGLAIWAVTLFGLLAGGALLVYNTSALAQ
        GGTTGLAIWAVTL G+LAGGALLVYNTSALAQ
Subjt:  GGTTGLAIWAVTLFGLLAGGALLVYNTSALAQ

P10690 Photosystem II 10 kDa polypeptide, chloroplastic3.8e-4875.37Show/hide
Query:  SSLSLKSSDFAIAARGRV--LPSIARTNSSIKVVASGGKKIKTDTPYGIGGGMNLRNGVDASGRKPTGKGVYQYVDKYGANVDGYSPIYNTDEWSATGDV
        SSLSLK S F +  +  V  LPS++R+++S  V ASG KKIK D P GIGGGM LR+GVD+SGRKPTGKGVYQ+VDKYGANVDGYSPIYN +EW+ TGDV
Subjt:  SSLSLKSSDFAIAARGRV--LPSIARTNSSIKVVASGGKKIKTDTPYGIGGGMNLRNGVDASGRKPTGKGVYQYVDKYGANVDGYSPIYNTDEWSATGDV

Query:  YAGGTTGLAIWAVTLFGLLAGGALLVYNTSALAQ
        YAGGTTGL IWAVTL GLLAGGALLVYNTSALAQ
Subjt:  YAGGTTGLAIWAVTLFGLLAGGALLVYNTSALAQ

P27202 Photosystem II 10 kDa polypeptide, chloroplastic1.8e-4572.26Show/hide
Query:  MASSLSLKSSDFAI---AARGRVLPSIARTNSSIKVVASGGKKIKTDTPYGIGGGMNLRNGVDASGRKPTGKGVYQYVDKYGANVDGYSPIYNTDEWSAT
        M SS++LK + F +   AARG  LPS+ R   S K+VASG KKIKTD P+GI G M+LR+GVDASGRK  G GVY+YVDKYGANVDGYSPIYN +EWSA+
Subjt:  MASSLSLKSSDFAI---AARGRVLPSIARTNSSIKVVASGGKKIKTDTPYGIGGGMNLRNGVDASGRKPTGKGVYQYVDKYGANVDGYSPIYNTDEWSAT

Query:  GDVYAGGTTGLAIWAVTLFGLLAGGALLVYNTSALAQ
        GDVY GG TGLAIWAVTL G+LAGGALLVYNTSALAQ
Subjt:  GDVYAGGTTGLAIWAVTLFGLLAGGALLVYNTSALAQ

Q40163 Photosystem II 10 kDa polypeptide, chloroplastic1.0e-4877.27Show/hide
Query:  SSLSLKSSDFAIAARGRVLPSIARTNSSIKVVASGGKKIKTDTPYGIGGGMNLRNGVDASGRKPTGKGVYQYVDKYGANVDGYSPIYNTDEWSATGDVYA
        SSLSLK +        + LPS+ R++SS KVVASG KK+KTD PYGI G M LR+GVDASGRKP GKGVYQYVDKYGANVDGYSPIYNTDEWS +GDVY 
Subjt:  SSLSLKSSDFAIAARGRVLPSIARTNSSIKVVASGGKKIKTDTPYGIGGGMNLRNGVDASGRKPTGKGVYQYVDKYGANVDGYSPIYNTDEWSATGDVYA

Query:  GGTTGLAIWAVTLFGLLAGGALLVYNTSALAQ
        GGTTGLAIWAVTL G+LAGGALLVYNTSALAQ
Subjt:  GGTTGLAIWAVTLFGLLAGGALLVYNTSALAQ

Q40519 Photosystem II 10 kDa polypeptide, chloroplastic2.7e-4672.46Show/hide
Query:  MASS-LSLKSSDFAI---AARGRVLPSIARTNSSIKVVASGGKKIKTDTPYGIGGGMNLRNGVDASGRKPTGKGVYQYVDKYGANVDGYSPIYNTDEWSA
        MAS+ +SLK + F++   A +G  LPS+AR++SS +V ASG KK+KTD PYGI G M+LR+GVDASGRK  GKGVYQ+VDKYGANVDGYSPIYNTD+WS 
Subjt:  MASS-LSLKSSDFAI---AARGRVLPSIARTNSSIKVVASGGKKIKTDTPYGIGGGMNLRNGVDASGRKPTGKGVYQYVDKYGANVDGYSPIYNTDEWSA

Query:  TGDVYAGGTTGLAIWAVTLFGLLAGGALLVYNTSALAQ
        +GDVY GGTTGLAIWAVTL G+LAGGALLV+NTSALAQ
Subjt:  TGDVYAGGTTGLAIWAVTLFGLLAGGALLVYNTSALAQ

Arabidopsis top hitse value%identityAlignment
AT1G79040.1 photosystem II subunit R1.2e-4672.26Show/hide
Query:  MASSLSLKSSDFAI---AARGRVLPSIARTNSSIKVVASGGKKIKTDTPYGIGGGMNLRNGVDASGRKPTGKGVYQYVDKYGANVDGYSPIYNTDEWSAT
        M SS++LK + F +   AARG  LPS+ R   S K+VASG KKIKTD P+GI G M+LR+GVDASGRK  G GVY+YVDKYGANVDGYSPIYN +EWSA+
Subjt:  MASSLSLKSSDFAI---AARGRVLPSIARTNSSIKVVASGGKKIKTDTPYGIGGGMNLRNGVDASGRKPTGKGVYQYVDKYGANVDGYSPIYNTDEWSAT

Query:  GDVYAGGTTGLAIWAVTLFGLLAGGALLVYNTSALAQ
        GDVY GG TGLAIWAVTL G+LAGGALLVYNTSALAQ
Subjt:  GDVYAGGTTGLAIWAVTLFGLLAGGALLVYNTSALAQ


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTTCTTCTCTCAGCCTCAAATCCTCCGATTTTGCCATCGCTGCTCGCGGCCGGGTTCTCCCGTCGATCGCCAGGACTAACTCCTCGATCAAAGTAGTCGCCAGCGG
CGGCAAGAAAATCAAAACCGATACACCCTACGGAATCGGCGGCGGCATGAACTTGAGGAACGGCGTCGATGCGTCCGGGAGGAAACCGACGGGCAAGGGAGTATACCAAT
ATGTGGACAAATACGGTGCCAATGTTGATGGATACAGTCCTATCTACAACACTGATGAATGGTCTGCTACTGGTGATGTATATGCTGGGGGTACAACGGGGCTGGCTATT
TGGGCCGTGACTCTATTTGGGCTTCTTGCTGGAGGGGCCCTTCTTGTCTACAACACAAGTGCTCTGGCCCAGTGA
mRNA sequenceShow/hide mRNA sequence
GCTATTTTCTCCTTGTTCCAGTCCTCTTATTAAAATGGAATACACAAATCTAGAAAATAAAAACATAGACTATGAAAAGAAAATGAATTAATTAAGTAAGAAGCAAAGGA
TGAAAAGTGGGAAGAAATCAAAATGAGAAGAGCAATCTTGAATGGAAGGCTAAAAATGGAGGGAAAAGAATTACCTCAACAAATGGAAAAGGATGATATCCAGATTTCCA
ACCACTCAACTTCTGGACTACGTGCTCTCCTAATTACCAATCACTCCCATTCCCTACCTTAACCTCTCTCGGTAATTACATCGAACACTTCGCGTGCACACCATTTCCAA
ATCGCAATCGCAATCGCCAATGGCTTCTTCTCTCAGCCTCAAATCCTCCGATTTTGCCATCGCTGCTCGCGGCCGGGTTCTCCCGTCGATCGCCAGGACTAACTCCTCGA
TCAAAGTAGTCGCCAGCGGCGGCAAGAAAATCAAAACCGATACACCCTACGGAATCGGCGGCGGCATGAACTTGAGGAACGGCGTCGATGCGTCCGGGAGGAAACCGACG
GGCAAGGGAGTATACCAATATGTGGACAAATACGGTGCCAATGTTGATGGATACAGTCCTATCTACAACACTGATGAATGGTCTGCTACTGGTGATGTATATGCTGGGGG
TACAACGGGGCTGGCTATTTGGGCCGTGACTCTATTTGGGCTTCTTGCTGGAGGGGCCCTTCTTGTCTACAACACAAGTGCTCTGGCCCAGTGATCTCATACACAGCCCA
TTATCCATTCCTTGCCTATATATATACTATGAGCCCCTTTGTAATCTTTCATATTTAAAACCTAAACTCATTTGAATACACTCATTATGTTCTGACAAAA
Protein sequenceShow/hide protein sequence
MASSLSLKSSDFAIAARGRVLPSIARTNSSIKVVASGGKKIKTDTPYGIGGGMNLRNGVDASGRKPTGKGVYQYVDKYGANVDGYSPIYNTDEWSATGDVYAGGTTGLAI
WAVTLFGLLAGGALLVYNTSALAQ