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Sed0016831 (gene) of Chayote v1 genome

Gene IDSed0016831
OrganismSechium edule (Chayote v1)
DescriptionRNase H domain-containing protein
Genome locationLG09:34608101..34608385
RNA-Seq ExpressionSed0016831
SyntenySed0016831
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily
IPR044730 - Ribonuclease H-like domain, plant type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAE8813045.1 hypothetical protein D1007_09808 [Hordeum vulgare]2.6e-0836.17Show/hide
Query:  MTSYCCQIPGIVDSEIAEAIAVCNGMDLAMDLGFQRIKMETDALRVVNLLNNQMHCRSEVGRLVEEIKSLARNFLFVSFGWCGRDANSIAHKLA
        M + C  IP   D+  AEA  +C+G+ LA +LG +++ +E+D + VV+ + +  +       + EE   LA NF F+ F +C R+AN  AH LA
Subjt:  MTSYCCQIPGIVDSEIAEAIAVCNGMDLAMDLGFQRIKMETDALRVVNLLNNQMHCRSEVGRLVEEIKSLARNFLFVSFGWCGRDANSIAHKLA

KAF7801517.1 reverse transcriptase [Senna tora]4.4e-0838.64Show/hide
Query:  QIPGIVDSEIAEAIAVCNGMDLAMDLGFQRIKMETDALRVVNLLNNQMHCRSEVGRLVEEIKSLARNFLFVSFGWCGRDANSIAHKLA
        ++P  VD +I EA A+  GM+ A DL  Q I +E D+  V+  L++ +  RS +G +++ I+SL  +F  V F W  R+AN +A  LA
Subjt:  QIPGIVDSEIAEAIAVCNGMDLAMDLGFQRIKMETDALRVVNLLNNQMHCRSEVGRLVEEIKSLARNFLFVSFGWCGRDANSIAHKLA

KAF7825347.1 uncharacterized protein G2W53_016511 [Senna tora]1.4e-0942.05Show/hide
Query:  QIPGIVDSEIAEAIAVCNGMDLAMDLGFQRIKMETDALRVVNLLNNQMHCRSEVGRLVEEIKSLARNFLFVSFGWCGRDANSIAHKLA
        +IP     E+ EA AV  GM++A+ LG Q+  +E + L ++N L + +   S +G ++  IKSL + F FVSF W  RDAN +A+KLA
Subjt:  QIPGIVDSEIAEAIAVCNGMDLAMDLGFQRIKMETDALRVVNLLNNQMHCRSEVGRLVEEIKSLARNFLFVSFGWCGRDANSIAHKLA

MBA0731259.1 hypothetical protein [Gossypium laxum]1.2e-0842.86Show/hide
Query:  CQIP--GIVDSEIAEAIAVCNGMDLAMDLGFQRIKMETDALRVVNLLNNQMHCRSEVGRLVEEIKSLARNFLFVSFGWCGRDANSIAHKLA
        C  P  G+ D+ IAEA      M  A +LGF+ I +E D+L V+  LNN    RS +G ++++IK   R F  V+FG+ GR AN+ AH LA
Subjt:  CQIP--GIVDSEIAEAIAVCNGMDLAMDLGFQRIKMETDALRVVNLLNNQMHCRSEVGRLVEEIKSLARNFLFVSFGWCGRDANSIAHKLA

TXG69190.1 hypothetical protein EZV62_004125 [Acer yangbiense]2.0e-0836.17Show/hide
Query:  MTSYCCQIPGIVDSEIAEAIAVCNGMDLAMDLGFQRIKMETDALRVVNLLNNQMHCRSEVGRLVEEIKSLARNFLFVSFGWCGRDANSIAHKLA
        M S C   PG++  +  EA+AV  G  LA++ G     +E+D+L VVNL+N+    R+E+G ++ +I ++  N  F S  +  R  N +AH LA
Subjt:  MTSYCCQIPGIVDSEIAEAIAVCNGMDLAMDLGFQRIKMETDALRVVNLLNNQMHCRSEVGRLVEEIKSLARNFLFVSFGWCGRDANSIAHKLA

TrEMBL top hitse value%identityAlignment
A0A2N9H585 RNase H domain-containing protein1.3e-0836.17Show/hide
Query:  MTSYCCQIPGIVDSEIAEAIAVCNGMDLAMDLGFQRIKMETDALRVVNLLNNQMHCRSEVGRLVEEIKSLARNFLFVSFGWCGRDANSIAHKLA
        M S C +IP     E+ EA AV   ++L +DLG + + +E D+L+++  L     C +  G L+ E K+LA+N +   F    RD N++AH LA
Subjt:  MTSYCCQIPGIVDSEIAEAIAVCNGMDLAMDLGFQRIKMETDALRVVNLLNNQMHCRSEVGRLVEEIKSLARNFLFVSFGWCGRDANSIAHKLA

A0A5C7IIT4 Uncharacterized protein9.6e-0936.17Show/hide
Query:  MTSYCCQIPGIVDSEIAEAIAVCNGMDLAMDLGFQRIKMETDALRVVNLLNNQMHCRSEVGRLVEEIKSLARNFLFVSFGWCGRDANSIAHKLA
        M S C   PG++  +  EA+AV  G  LA++ G     +E+D+L VVNL+N+    R+E+G ++ +I ++  N  F S  +  R  N +AH LA
Subjt:  MTSYCCQIPGIVDSEIAEAIAVCNGMDLAMDLGFQRIKMETDALRVVNLLNNQMHCRSEVGRLVEEIKSLARNFLFVSFGWCGRDANSIAHKLA

A0A5J9SXC3 RNase H domain-containing protein (Fragment)3.6e-0847.06Show/hide
Query:  GIVDSEIAEAIAVCNGMDLAMDLGFQRIKMETDALRVVNLLNNQMHCRSEVGRLVEEIKSLARNFLFVSFGWCGRDANSIAHKLA
        GI D E+AEA+A   GM LA DL  Q+ ++ TD L VV   N Q       G +V EIK+ A++F+ VSF   GR+AN  AH+LA
Subjt:  GIVDSEIAEAIAVCNGMDLAMDLGFQRIKMETDALRVVNLLNNQMHCRSEVGRLVEEIKSLARNFLFVSFGWCGRDANSIAHKLA

A0A7J9B6E6 RNase H domain-containing protein5.6e-0942.86Show/hide
Query:  CQIP--GIVDSEIAEAIAVCNGMDLAMDLGFQRIKMETDALRVVNLLNNQMHCRSEVGRLVEEIKSLARNFLFVSFGWCGRDANSIAHKLA
        C  P  G+ D+ IAEA      M  A +LGF+ I +E D+L V+  LNN    RS +G ++++IK   R F  V+FG+ GR AN+ AH LA
Subjt:  CQIP--GIVDSEIAEAIAVCNGMDLAMDLGFQRIKMETDALRVVNLLNNQMHCRSEVGRLVEEIKSLARNFLFVSFGWCGRDANSIAHKLA

V4UMR3 RNase H domain-containing protein (Fragment)8.1e-0839.18Show/hide
Query:  MTSYCCQIPGIVDSEIAEAIAVCNGMDLAMDLGFQRIKMETDALRVVNLLNNQMHCRSEVGRL---VEEIKSLARNFLFVSFGWCGRDANSIAHKLA
        M +  C +    D E  EA+AV NG+ L MD+G     +E+D+  VVNL+NN++H R EVG L   V+E+ S + +   V F    R  N +AH L+
Subjt:  MTSYCCQIPGIVDSEIAEAIAVCNGMDLAMDLGFQRIKMETDALRVVNLLNNQMHCRSEVGRL---VEEIKSLARNFLFVSFGWCGRDANSIAHKLA

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACTTCTTATTGTTGTCAGATTCCAGGGATTGTAGATTCTGAGATAGCGGAGGCAATAGCAGTATGTAATGGCATGGACCTTGCGATGGATCTCGGATTTCAAAGAAT
TAAAATGGAGACGGATGCTTTGCGTGTGGTAAATCTTCTCAACAACCAAATGCATTGTCGATCGGAAGTTGGAAGGCTTGTCGAAGAGATAAAGAGCTTAGCGAGAAACT
TCTTGTTCGTGAGCTTTGGGTGGTGTGGACGAGATGCGAATTCTATTGCTCACAAGCTAGCTTAG
mRNA sequenceShow/hide mRNA sequence
ATGACTTCTTATTGTTGTCAGATTCCAGGGATTGTAGATTCTGAGATAGCGGAGGCAATAGCAGTATGTAATGGCATGGACCTTGCGATGGATCTCGGATTTCAAAGAAT
TAAAATGGAGACGGATGCTTTGCGTGTGGTAAATCTTCTCAACAACCAAATGCATTGTCGATCGGAAGTTGGAAGGCTTGTCGAAGAGATAAAGAGCTTAGCGAGAAACT
TCTTGTTCGTGAGCTTTGGGTGGTGTGGACGAGATGCGAATTCTATTGCTCACAAGCTAGCTTAG
Protein sequenceShow/hide protein sequence
MTSYCCQIPGIVDSEIAEAIAVCNGMDLAMDLGFQRIKMETDALRVVNLLNNQMHCRSEVGRLVEEIKSLARNFLFVSFGWCGRDANSIAHKLA