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Sed0016868 (gene) of Chayote v1 genome

Gene IDSed0016868
OrganismSechium edule (Chayote v1)
Description60S ribosomal protein L22-2
Genome locationLG09:36629532..36631847
RNA-Seq ExpressionSed0016868
SyntenySed0016868
Gene Ontology termsGO:0002181 - cytoplasmic translation (biological process)
GO:0005737 - cytoplasm (cellular component)
GO:0005840 - ribosome (cellular component)
GO:0003723 - RNA binding (molecular function)
GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domainsIPR002671 - Ribosomal protein L22e
IPR038526 - Ribosomal protein L22e superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004136027.1 60S ribosomal protein L22-2 [Cucumis sativus]3.7e-5895.24Show/hide
Query:  MSRGSAASGGQKGKKKGVSFVIDCAKPVEDKIMDIASLEKFLLERIKVGGKAGALGDAVSVTREKNKITVNSDSNFSKRYLKYLTKKYLKKHNVRDWLRV
        MSRG+AASGG KGKKKGV+FVIDCAKPVEDKIMDIASLEKFLLERIKVGGKAGALGD+V+VTR+KNKITVNSDSNFSKRYLKYLTKKYLKKHNVRDWLRV
Subjt:  MSRGSAASGGQKGKKKGVSFVIDCAKPVEDKIMDIASLEKFLLERIKVGGKAGALGDAVSVTREKNKITVNSDSNFSKRYLKYLTKKYLKKHNVRDWLRV

Query:  IASNKDRNVYELRYFNIAENEGEEED
        IASNKDRNVYELRYFNIAENEGEEED
Subjt:  IASNKDRNVYELRYFNIAENEGEEED

XP_022953729.1 60S ribosomal protein L22-2-like [Cucurbita moschata]1.8e-5795.24Show/hide
Query:  MSRGSAASGGQKGKKKGVSFVIDCAKPVEDKIMDIASLEKFLLERIKVGGKAGALGDAVSVTREKNKITVNSDSNFSKRYLKYLTKKYLKKHNVRDWLRV
        MSRG+AASG  KGKKKGV+FVIDCAKPVEDKIMDIASLEKFLLERIKVGGKAGALGDAV+VTR+KNKITVNSDSNFSKRYLKYLTKKYLKKHNVRDWLRV
Subjt:  MSRGSAASGGQKGKKKGVSFVIDCAKPVEDKIMDIASLEKFLLERIKVGGKAGALGDAVSVTREKNKITVNSDSNFSKRYLKYLTKKYLKKHNVRDWLRV

Query:  IASNKDRNVYELRYFNIAENEGEEED
        IASNKDRNVYELRYFNIAENEGEEED
Subjt:  IASNKDRNVYELRYFNIAENEGEEED

XP_022960081.1 60S ribosomal protein L22-2-like [Cucurbita moschata]1.8e-5794.44Show/hide
Query:  MSRGSAASGGQKGKKKGVSFVIDCAKPVEDKIMDIASLEKFLLERIKVGGKAGALGDAVSVTREKNKITVNSDSNFSKRYLKYLTKKYLKKHNVRDWLRV
        MSRG+AASGG KGKKKG +FVIDCAKPVEDKIMDIASLEKFLLERIKVGGKAGALGD+V+VTR+KNKITVNSDSNFSKRYLKYLTKKYLKKHNVRDWLRV
Subjt:  MSRGSAASGGQKGKKKGVSFVIDCAKPVEDKIMDIASLEKFLLERIKVGGKAGALGDAVSVTREKNKITVNSDSNFSKRYLKYLTKKYLKKHNVRDWLRV

Query:  IASNKDRNVYELRYFNIAENEGEEED
        IASNKDRNVYELRYFNIAENEGEEED
Subjt:  IASNKDRNVYELRYFNIAENEGEEED

XP_022991268.1 60S ribosomal protein L22-2-like [Cucurbita maxima]3.7e-5895.24Show/hide
Query:  MSRGSAASGGQKGKKKGVSFVIDCAKPVEDKIMDIASLEKFLLERIKVGGKAGALGDAVSVTREKNKITVNSDSNFSKRYLKYLTKKYLKKHNVRDWLRV
        MSRG+AASGG KGKKKGV+FVIDCAKPVEDKIMDIASLEKFLLERIKVGGKAGALGDAV+VTR+KNKITVNSDSNFSKRYLKYLTKKYLKKHNVRDWLRV
Subjt:  MSRGSAASGGQKGKKKGVSFVIDCAKPVEDKIMDIASLEKFLLERIKVGGKAGALGDAVSVTREKNKITVNSDSNFSKRYLKYLTKKYLKKHNVRDWLRV

Query:  IASNKDRNVYELRYFNIAENEGEEED
        IASNKDRNVYEL+YFNIAENEGEEED
Subjt:  IASNKDRNVYELRYFNIAENEGEEED

XP_023548993.1 60S ribosomal protein L22-2-like [Cucurbita pepo subsp. pepo]1.6e-5896.03Show/hide
Query:  MSRGSAASGGQKGKKKGVSFVIDCAKPVEDKIMDIASLEKFLLERIKVGGKAGALGDAVSVTREKNKITVNSDSNFSKRYLKYLTKKYLKKHNVRDWLRV
        MSRG+AASGG KGKKKGV+FVIDCAKPVEDKIMDIASLEKFLLERIKVGGKAGALGDAV+VTR+KNKITVNSDSNFSKRYLKYLTKKYLKKHNVRDWLRV
Subjt:  MSRGSAASGGQKGKKKGVSFVIDCAKPVEDKIMDIASLEKFLLERIKVGGKAGALGDAVSVTREKNKITVNSDSNFSKRYLKYLTKKYLKKHNVRDWLRV

Query:  IASNKDRNVYELRYFNIAENEGEEED
        IASNKDRNVYELRYFNIAENEGEEED
Subjt:  IASNKDRNVYELRYFNIAENEGEEED

TrEMBL top hitse value%identityAlignment
A0A0A0K637 Uncharacterized protein1.8e-5895.24Show/hide
Query:  MSRGSAASGGQKGKKKGVSFVIDCAKPVEDKIMDIASLEKFLLERIKVGGKAGALGDAVSVTREKNKITVNSDSNFSKRYLKYLTKKYLKKHNVRDWLRV
        MSRG+AASGG KGKKKGV+FVIDCAKPVEDKIMDIASLEKFLLERIKVGGKAGALGD+V+VTR+KNKITVNSDSNFSKRYLKYLTKKYLKKHNVRDWLRV
Subjt:  MSRGSAASGGQKGKKKGVSFVIDCAKPVEDKIMDIASLEKFLLERIKVGGKAGALGDAVSVTREKNKITVNSDSNFSKRYLKYLTKKYLKKHNVRDWLRV

Query:  IASNKDRNVYELRYFNIAENEGEEED
        IASNKDRNVYELRYFNIAENEGEEED
Subjt:  IASNKDRNVYELRYFNIAENEGEEED

A0A1S3BRQ9 60S ribosomal protein L22-21.8e-5895.24Show/hide
Query:  MSRGSAASGGQKGKKKGVSFVIDCAKPVEDKIMDIASLEKFLLERIKVGGKAGALGDAVSVTREKNKITVNSDSNFSKRYLKYLTKKYLKKHNVRDWLRV
        MSRG+AASGG KGKKKGV+FVIDCAKPVEDKIMDIASLEKFLLERIKVGGKAGALGD+V+VTR+KNKITVNSDSNFSKRYLKYLTKKYLKKHNVRDWLRV
Subjt:  MSRGSAASGGQKGKKKGVSFVIDCAKPVEDKIMDIASLEKFLLERIKVGGKAGALGDAVSVTREKNKITVNSDSNFSKRYLKYLTKKYLKKHNVRDWLRV

Query:  IASNKDRNVYELRYFNIAENEGEEED
        IASNKDRNVYELRYFNIAENEGEEED
Subjt:  IASNKDRNVYELRYFNIAENEGEEED

A0A5D3D2W6 60S ribosomal protein L22-2-like1.8e-5895.24Show/hide
Query:  MSRGSAASGGQKGKKKGVSFVIDCAKPVEDKIMDIASLEKFLLERIKVGGKAGALGDAVSVTREKNKITVNSDSNFSKRYLKYLTKKYLKKHNVRDWLRV
        MSRG+AASGG KGKKKGV+FVIDCAKPVEDKIMDIASLEKFLLERIKVGGKAGALGD+V+VTR+KNKITVNSDSNFSKRYLKYLTKKYLKKHNVRDWLRV
Subjt:  MSRGSAASGGQKGKKKGVSFVIDCAKPVEDKIMDIASLEKFLLERIKVGGKAGALGDAVSVTREKNKITVNSDSNFSKRYLKYLTKKYLKKHNVRDWLRV

Query:  IASNKDRNVYELRYFNIAENEGEEED
        IASNKDRNVYELRYFNIAENEGEEED
Subjt:  IASNKDRNVYELRYFNIAENEGEEED

A0A6J1DLK6 60S ribosomal protein L22-21.8e-5895.24Show/hide
Query:  MSRGSAASGGQKGKKKGVSFVIDCAKPVEDKIMDIASLEKFLLERIKVGGKAGALGDAVSVTREKNKITVNSDSNFSKRYLKYLTKKYLKKHNVRDWLRV
        MSRG+AASGG KGKKKGV+FVIDCAKPVEDKIMDIASLEKFLLERIKVGGKAGALGD+V+VTR+KNKITVNSDSNFSKRYLKYLTKKYLKKHNVRDWLRV
Subjt:  MSRGSAASGGQKGKKKGVSFVIDCAKPVEDKIMDIASLEKFLLERIKVGGKAGALGDAVSVTREKNKITVNSDSNFSKRYLKYLTKKYLKKHNVRDWLRV

Query:  IASNKDRNVYELRYFNIAENEGEEED
        IASNKDRNVYELRYFNIAENEGEEED
Subjt:  IASNKDRNVYELRYFNIAENEGEEED

A0A6J1JVR1 60S ribosomal protein L22-2-like1.8e-5895.24Show/hide
Query:  MSRGSAASGGQKGKKKGVSFVIDCAKPVEDKIMDIASLEKFLLERIKVGGKAGALGDAVSVTREKNKITVNSDSNFSKRYLKYLTKKYLKKHNVRDWLRV
        MSRG+AASGG KGKKKGV+FVIDCAKPVEDKIMDIASLEKFLLERIKVGGKAGALGDAV+VTR+KNKITVNSDSNFSKRYLKYLTKKYLKKHNVRDWLRV
Subjt:  MSRGSAASGGQKGKKKGVSFVIDCAKPVEDKIMDIASLEKFLLERIKVGGKAGALGDAVSVTREKNKITVNSDSNFSKRYLKYLTKKYLKKHNVRDWLRV

Query:  IASNKDRNVYELRYFNIAENEGEEED
        IASNKDRNVYEL+YFNIAENEGEEED
Subjt:  IASNKDRNVYELRYFNIAENEGEEED

SwissProt top hitse value%identityAlignment
P47198 60S ribosomal protein L228.0e-3262.81Show/hide
Query:  ASGGQKGKKKGVSFVIDCAKPVEDKIMDIASLEKFLLERIKVGGKAGAL-GDAVSVTREKNKITVNSDSNFSKRYLKYLTKKYLKKHNVRDWLRVIASNK
        A GG+K KK+ + F +DC  PVED IMD A+ E+FL ERIKV GKAG L G  V++ R K+KITV S+  FSKRYLKYLTKKYLKK+N+RDWLRV+A++K
Subjt:  ASGGQKGKKKGVSFVIDCAKPVEDKIMDIASLEKFLLERIKVGGKAGAL-GDAVSVTREKNKITVNSDSNFSKRYLKYLTKKYLKKHNVRDWLRVIASNK

Query:  DRNVYELRYFNIAENEGEEED
        +   YELRYF I ++E EEED
Subjt:  DRNVYELRYFNIAENEGEEED

Q90YU6 60S ribosomal protein L223.6e-3263.93Show/hide
Query:  AASGGQKGKKKGVSFVIDCAKPVEDKIMDIASLEKFLLERIKVGGKAGAL-GDAVSVTREKNKITVNSDSNFSKRYLKYLTKKYLKKHNVRDWLRVIASN
        A  GG+K KK+ + F +DC  PVED IMD A+ E+FL ERIKV GKAG L G  VS+ R K+KITV SD  FSKRYLKYLTKKYLKK+N+RDWLRV+A+ 
Subjt:  AASGGQKGKKKGVSFVIDCAKPVEDKIMDIASLEKFLLERIKVGGKAGAL-GDAVSVTREKNKITVNSDSNFSKRYLKYLTKKYLKKHNVRDWLRVIASN

Query:  KDRNVYELRYFNIAENEGEEED
        K+   YELRYF I ++E EEED
Subjt:  KDRNVYELRYFNIAENEGEEED

Q9FE58 60S ribosomal protein L22-31.8e-5284.13Show/hide
Query:  MSRGSAASGGQKGKKKGVSFVIDCAKPVEDKIMDIASLEKFLLERIKVGGKAGALGDAVSVTREKNKITVNSDSNFSKRYLKYLTKKYLKKHNVRDWLRV
        MSRG+AA+   KGKKKGVSF IDC+KPV+DKIM+IASLEKFL ERIKVGGKAGALGD+VS+TREK+KITV +D  FSKRYLKYLTKKYLKKHNVRDWLRV
Subjt:  MSRGSAASGGQKGKKKGVSFVIDCAKPVEDKIMDIASLEKFLLERIKVGGKAGALGDAVSVTREKNKITVNSDSNFSKRYLKYLTKKYLKKHNVRDWLRV

Query:  IASNKDRNVYELRYFNIAENEGEEED
        IA+NKDRN+YELRYFNIAENE EEED
Subjt:  IASNKDRNVYELRYFNIAENEGEEED

Q9M9W1 60S ribosomal protein L22-22.4e-5284.13Show/hide
Query:  MSRGSAASGGQKGKKKGVSFVIDCAKPVEDKIMDIASLEKFLLERIKVGGKAGALGDAVSVTREKNKITVNSDSNFSKRYLKYLTKKYLKKHNVRDWLRV
        MSRG AA    KGKKKGVSF IDC+KPV+DKIM+IASLEKFL ERIKVGGKAGALGD+V++TREK+KITV +D  FSKRYLKYLTKKYLKKHNVRDWLRV
Subjt:  MSRGSAASGGQKGKKKGVSFVIDCAKPVEDKIMDIASLEKFLLERIKVGGKAGALGDAVSVTREKNKITVNSDSNFSKRYLKYLTKKYLKKHNVRDWLRV

Query:  IASNKDRNVYELRYFNIAENEGEEED
        IA+NKDRN+YELRYFNIAENEGEEED
Subjt:  IASNKDRNVYELRYFNIAENEGEEED

Q9SRX7 Putative 60S ribosomal protein L22-18.5e-4269.84Show/hide
Query:  MSRGSAASGGQKGKKKGVSFVIDCAKPVEDKIMDIASLEKFLLERIKVGGKAGALGDAVSVTREKNKITVNSDSNFSKRYLKYLTKKYLKKHNVRDWLRV
        M+R  A S G   KKKGVSFVIDC+KPV+D I++IA+LEKFL ERIKV GKAGALG++VS+TR   KI VN++SNFSKRYLKYLTKKYLKK+N+RDWLRV
Subjt:  MSRGSAASGGQKGKKKGVSFVIDCAKPVEDKIMDIASLEKFLLERIKVGGKAGALGDAVSVTREKNKITVNSDSNFSKRYLKYLTKKYLKKHNVRDWLRV

Query:  IASNKDRNVYELRYFNIAENEGEEED
        IASNKD+NVYE+RYF I +     E+
Subjt:  IASNKDRNVYELRYFNIAENEGEEED

Arabidopsis top hitse value%identityAlignment
AT1G02830.1 Ribosomal L22e protein family6.0e-4369.84Show/hide
Query:  MSRGSAASGGQKGKKKGVSFVIDCAKPVEDKIMDIASLEKFLLERIKVGGKAGALGDAVSVTREKNKITVNSDSNFSKRYLKYLTKKYLKKHNVRDWLRV
        M+R  A S G   KKKGVSFVIDC+KPV+D I++IA+LEKFL ERIKV GKAGALG++VS+TR   KI VN++SNFSKRYLKYLTKKYLKK+N+RDWLRV
Subjt:  MSRGSAASGGQKGKKKGVSFVIDCAKPVEDKIMDIASLEKFLLERIKVGGKAGALGDAVSVTREKNKITVNSDSNFSKRYLKYLTKKYLKKHNVRDWLRV

Query:  IASNKDRNVYELRYFNIAENEGEEED
        IASNKD+NVYE+RYF I +     E+
Subjt:  IASNKDRNVYELRYFNIAENEGEEED

AT3G05560.1 Ribosomal L22e protein family1.7e-5384.13Show/hide
Query:  MSRGSAASGGQKGKKKGVSFVIDCAKPVEDKIMDIASLEKFLLERIKVGGKAGALGDAVSVTREKNKITVNSDSNFSKRYLKYLTKKYLKKHNVRDWLRV
        MSRG AA    KGKKKGVSF IDC+KPV+DKIM+IASLEKFL ERIKVGGKAGALGD+V++TREK+KITV +D  FSKRYLKYLTKKYLKKHNVRDWLRV
Subjt:  MSRGSAASGGQKGKKKGVSFVIDCAKPVEDKIMDIASLEKFLLERIKVGGKAGALGDAVSVTREKNKITVNSDSNFSKRYLKYLTKKYLKKHNVRDWLRV

Query:  IASNKDRNVYELRYFNIAENEGEEED
        IA+NKDRN+YELRYFNIAENEGEEED
Subjt:  IASNKDRNVYELRYFNIAENEGEEED

AT3G05560.2 Ribosomal L22e protein family1.7e-5384.13Show/hide
Query:  MSRGSAASGGQKGKKKGVSFVIDCAKPVEDKIMDIASLEKFLLERIKVGGKAGALGDAVSVTREKNKITVNSDSNFSKRYLKYLTKKYLKKHNVRDWLRV
        MSRG AA    KGKKKGVSF IDC+KPV+DKIM+IASLEKFL ERIKVGGKAGALGD+V++TREK+KITV +D  FSKRYLKYLTKKYLKKHNVRDWLRV
Subjt:  MSRGSAASGGQKGKKKGVSFVIDCAKPVEDKIMDIASLEKFLLERIKVGGKAGALGDAVSVTREKNKITVNSDSNFSKRYLKYLTKKYLKKHNVRDWLRV

Query:  IASNKDRNVYELRYFNIAENEGEEED
        IA+NKDRN+YELRYFNIAENEGEEED
Subjt:  IASNKDRNVYELRYFNIAENEGEEED

AT3G05560.3 Ribosomal L22e protein family1.7e-5384.13Show/hide
Query:  MSRGSAASGGQKGKKKGVSFVIDCAKPVEDKIMDIASLEKFLLERIKVGGKAGALGDAVSVTREKNKITVNSDSNFSKRYLKYLTKKYLKKHNVRDWLRV
        MSRG AA    KGKKKGVSF IDC+KPV+DKIM+IASLEKFL ERIKVGGKAGALGD+V++TREK+KITV +D  FSKRYLKYLTKKYLKKHNVRDWLRV
Subjt:  MSRGSAASGGQKGKKKGVSFVIDCAKPVEDKIMDIASLEKFLLERIKVGGKAGALGDAVSVTREKNKITVNSDSNFSKRYLKYLTKKYLKKHNVRDWLRV

Query:  IASNKDRNVYELRYFNIAENEGEEED
        IA+NKDRN+YELRYFNIAENEGEEED
Subjt:  IASNKDRNVYELRYFNIAENEGEEED

AT5G27770.1 Ribosomal L22e protein family1.3e-5384.13Show/hide
Query:  MSRGSAASGGQKGKKKGVSFVIDCAKPVEDKIMDIASLEKFLLERIKVGGKAGALGDAVSVTREKNKITVNSDSNFSKRYLKYLTKKYLKKHNVRDWLRV
        MSRG+AA+   KGKKKGVSF IDC+KPV+DKIM+IASLEKFL ERIKVGGKAGALGD+VS+TREK+KITV +D  FSKRYLKYLTKKYLKKHNVRDWLRV
Subjt:  MSRGSAASGGQKGKKKGVSFVIDCAKPVEDKIMDIASLEKFLLERIKVGGKAGALGDAVSVTREKNKITVNSDSNFSKRYLKYLTKKYLKKHNVRDWLRV

Query:  IASNKDRNVYELRYFNIAENEGEEED
        IA+NKDRN+YELRYFNIAENE EEED
Subjt:  IASNKDRNVYELRYFNIAENEGEEED


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGCCGTGGATCAGCAGCTTCCGGCGGGCAGAAGGGGAAGAAGAAGGGAGTGAGCTTCGTGATCGACTGCGCGAAGCCAGTCGAGGACAAGATCATGGACATCGCCTC
GTTGGAGAAGTTTCTTCTCGAGAGGATCAAGGTCGGCGGCAAAGCCGGCGCACTCGGCGACGCCGTTTCCGTCACTCGGGAGAAGAACAAGATCACCGTCAACTCCGATA
GCAACTTCTCCAAGAGGTATCTCAAGTACTTGACTAAGAAGTATTTGAAGAAACACAATGTTAGAGATTGGCTTCGGGTTATTGCTTCGAACAAAGACCGCAACGTCTAT
GAATTAAGGTACTTCAACATAGCCGAGAACGAGGGCGAGGAAGAGGATTGA
mRNA sequenceShow/hide mRNA sequence
TAAAATGGATTATTTTCGTAAAAAACCGCAATCTCCTTCAGGCTTTAAATAAAAAACTCAAAACCCTAAAAACCAGCGCCATTGTACAAAATTAGGGCAAACTAGTTGCA
GAGCAGCCGGAAAAATGAGCCGTGGATCAGCAGCTTCCGGCGGGCAGAAGGGGAAGAAGAAGGGAGTGAGCTTCGTGATCGACTGCGCGAAGCCAGTCGAGGACAAGATC
ATGGACATCGCCTCGTTGGAGAAGTTTCTTCTCGAGAGGATCAAGGTCGGCGGCAAAGCCGGCGCACTCGGCGACGCCGTTTCCGTCACTCGGGAGAAGAACAAGATCAC
CGTCAACTCCGATAGCAACTTCTCCAAGAGGTATCTCAAGTACTTGACTAAGAAGTATTTGAAGAAACACAATGTTAGAGATTGGCTTCGGGTTATTGCTTCGAACAAAG
ACCGCAACGTCTATGAATTAAGGTACTTCAACATAGCCGAGAACGAGGGCGAGGAAGAGGATTGAGGAGGCATGGTTTGCAGTAGAAATATTCCCATATTGAGGTTGTTG
AAATTATATTTCCTTATCTAGTGTTGAAGCTTTCCATATATATATTAGCAAGGATTCTTTGAATTATGAGATAATGCAACTATGGTTTACTTCCGAAGATTTAATATCTA
TAAATTTTGTTCACGTAGTCCTTTTTTGGTTGGTTTGAAGATATTTTCCTTTCTCCGAG
Protein sequenceShow/hide protein sequence
MSRGSAASGGQKGKKKGVSFVIDCAKPVEDKIMDIASLEKFLLERIKVGGKAGALGDAVSVTREKNKITVNSDSNFSKRYLKYLTKKYLKKHNVRDWLRVIASNKDRNVY
ELRYFNIAENEGEEED