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Sed0016940 (gene) of Chayote v1 genome

Gene IDSed0016940
OrganismSechium edule (Chayote v1)
DescriptionTy3-gypsy retrotransposon protein
Genome locationLG05:5559005..5559520
RNA-Seq ExpressionSed0016940
SyntenySed0016940
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0037432.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]3.8e-3557.52Show/hide
Query:  MSVMMTNTSTSEERLAECEKKISMLLEVVKEKNDEINSLKNQIESRDVVESS--HTVINKDKGKSIMQEDHSQHNASIATLF------------------
        +SVM+TN  TSE R+AE EKK++ML++VV+E++ EI  LKN IESRD  ESS  HTV N DKGK++MQE   Q++ SIA+L                   
Subjt:  MSVMMTNTSTSEERLAECEKKISMLLEVVKEKNDEINSLKNQIESRDVVESS--HTVINKDKGKSIMQEDHSQHNASIATLF------------------

Query:  ----------PYTKRIDNLRMPTGYQPPKFQQFDGKGNPKQHVAHFVETCENA
                  PYTKRIDNLRMP GYQPPKFQQFDGKGNPKQHVAHF+ETCE A
Subjt:  ----------PYTKRIDNLRMPTGYQPPKFQQFDGKGNPKQHVAHFVETCENA

KAA0056121.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]3.8e-3557.52Show/hide
Query:  MSVMMTNTSTSEERLAECEKKISMLLEVVKEKNDEINSLKNQIESRDVVESS--HTVINKDKGKSIMQEDHSQHNASIATLF------------------
        MSVM+TN  TSE R+AE EKK++ML++VV+E++ EI  LKN IESRD  ESS  HTV N DKGK++MQE   Q++ SIA+L                   
Subjt:  MSVMMTNTSTSEERLAECEKKISMLLEVVKEKNDEINSLKNQIESRDVVESS--HTVINKDKGKSIMQEDHSQHNASIATLF------------------

Query:  ----------PYTKRIDNLRMPTGYQPPKFQQFDGKGNPKQHVAHFVETCENA
                  PYTKRIDNLRMP GYQPPKFQQFDGKGNPKQHVAHF++TCE A
Subjt:  ----------PYTKRIDNLRMPTGYQPPKFQQFDGKGNPKQHVAHFVETCENA

KAA0059562.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]1.3e-3558.17Show/hide
Query:  MSVMMTNTSTSEERLAECEKKISMLLEVVKEKNDEINSLKNQIESRDVVESS--HTVINKDKGKSIMQEDHSQHNASIATLF------------------
        MSVM+TN  TSE R+AE EKK++ML++VV+E++ EI  LKN IESRD  ESS  HTV N DKGK++MQE   Q++ SIA+L                   
Subjt:  MSVMMTNTSTSEERLAECEKKISMLLEVVKEKNDEINSLKNQIESRDVVESS--HTVINKDKGKSIMQEDHSQHNASIATLF------------------

Query:  ----------PYTKRIDNLRMPTGYQPPKFQQFDGKGNPKQHVAHFVETCENA
                  PYTKRIDNLRMP GYQPPKFQQFDGKGNPKQHVAHF+ETCE A
Subjt:  ----------PYTKRIDNLRMPTGYQPPKFQQFDGKGNPKQHVAHFVETCENA

TYK03695.1 retrotransposon gag protein [Cucumis melo var. makuwa]1.3e-3558.17Show/hide
Query:  MSVMMTNTSTSEERLAECEKKISMLLEVVKEKNDEINSLKNQIESRDVVESS--HTVINKDKGKSIMQEDHSQHNASIATLF------------------
        MSVM+TN  TSE R+AE EKK++ML++VV+E++ EI  LKN IESRD  ESS  HTV N DKGK++MQE   Q++ SIA+L                   
Subjt:  MSVMMTNTSTSEERLAECEKKISMLLEVVKEKNDEINSLKNQIESRDVVESS--HTVINKDKGKSIMQEDHSQHNASIATLF------------------

Query:  ----------PYTKRIDNLRMPTGYQPPKFQQFDGKGNPKQHVAHFVETCENA
                  PYTKRIDNLRMP GYQPPKFQQFDGKGNPKQHVAHF+ETCE A
Subjt:  ----------PYTKRIDNLRMPTGYQPPKFQQFDGKGNPKQHVAHFVETCENA

TYK14887.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]3.8e-3558.17Show/hide
Query:  MSVMMTNTSTSEERLAECEKKISMLLEVVKEKNDEINSLKNQIESRDVVESS--HTVINKDKGKSIMQEDHSQHNASIATLF------------------
        MSVM+TN  TSE R+AE EKK++ML++VV+E++ EI  LKN IESRD  ESS  HTV N DKGK++MQE   Q+  SIA+L                   
Subjt:  MSVMMTNTSTSEERLAECEKKISMLLEVVKEKNDEINSLKNQIESRDVVESS--HTVINKDKGKSIMQEDHSQHNASIATLF------------------

Query:  ----------PYTKRIDNLRMPTGYQPPKFQQFDGKGNPKQHVAHFVETCENA
                  PYTKRIDNLRMP GYQPPKFQQFDGKGNPKQHVAHF+ETCE A
Subjt:  ----------PYTKRIDNLRMPTGYQPPKFQQFDGKGNPKQHVAHFVETCENA

TrEMBL top hitse value%identityAlignment
A0A5A7T1V3 Ty3-gypsy retrotransposon protein1.8e-3557.52Show/hide
Query:  MSVMMTNTSTSEERLAECEKKISMLLEVVKEKNDEINSLKNQIESRDVVESS--HTVINKDKGKSIMQEDHSQHNASIATLF------------------
        +SVM+TN  TSE R+AE EKK++ML++VV+E++ EI  LKN IESRD  ESS  HTV N DKGK++MQE   Q++ SIA+L                   
Subjt:  MSVMMTNTSTSEERLAECEKKISMLLEVVKEKNDEINSLKNQIESRDVVESS--HTVINKDKGKSIMQEDHSQHNASIATLF------------------

Query:  ----------PYTKRIDNLRMPTGYQPPKFQQFDGKGNPKQHVAHFVETCENA
                  PYTKRIDNLRMP GYQPPKFQQFDGKGNPKQHVAHF+ETCE A
Subjt:  ----------PYTKRIDNLRMPTGYQPPKFQQFDGKGNPKQHVAHFVETCENA

A0A5A7URH1 Ty3-gypsy retrotransposon protein1.8e-3557.52Show/hide
Query:  MSVMMTNTSTSEERLAECEKKISMLLEVVKEKNDEINSLKNQIESRDVVESS--HTVINKDKGKSIMQEDHSQHNASIATLF------------------
        MSVM+TN  TSE R+AE EKK++ML++VV+E++ EI  LKN IESRD  ESS  HTV N DKGK++MQE   Q++ SIA+L                   
Subjt:  MSVMMTNTSTSEERLAECEKKISMLLEVVKEKNDEINSLKNQIESRDVVESS--HTVINKDKGKSIMQEDHSQHNASIATLF------------------

Query:  ----------PYTKRIDNLRMPTGYQPPKFQQFDGKGNPKQHVAHFVETCENA
                  PYTKRIDNLRMP GYQPPKFQQFDGKGNPKQHVAHF++TCE A
Subjt:  ----------PYTKRIDNLRMPTGYQPPKFQQFDGKGNPKQHVAHFVETCENA

A0A5A7UUI7 Ty3-gypsy retrotransposon protein6.3e-3658.17Show/hide
Query:  MSVMMTNTSTSEERLAECEKKISMLLEVVKEKNDEINSLKNQIESRDVVESS--HTVINKDKGKSIMQEDHSQHNASIATLF------------------
        MSVM+TN  TSE R+AE EKK++ML++VV+E++ EI  LKN IESRD  ESS  HTV N DKGK++MQE   Q++ SIA+L                   
Subjt:  MSVMMTNTSTSEERLAECEKKISMLLEVVKEKNDEINSLKNQIESRDVVESS--HTVINKDKGKSIMQEDHSQHNASIATLF------------------

Query:  ----------PYTKRIDNLRMPTGYQPPKFQQFDGKGNPKQHVAHFVETCENA
                  PYTKRIDNLRMP GYQPPKFQQFDGKGNPKQHVAHF+ETCE A
Subjt:  ----------PYTKRIDNLRMPTGYQPPKFQQFDGKGNPKQHVAHFVETCENA

A0A5D3BX77 Retrotransposon gag protein6.3e-3658.17Show/hide
Query:  MSVMMTNTSTSEERLAECEKKISMLLEVVKEKNDEINSLKNQIESRDVVESS--HTVINKDKGKSIMQEDHSQHNASIATLF------------------
        MSVM+TN  TSE R+AE EKK++ML++VV+E++ EI  LKN IESRD  ESS  HTV N DKGK++MQE   Q++ SIA+L                   
Subjt:  MSVMMTNTSTSEERLAECEKKISMLLEVVKEKNDEINSLKNQIESRDVVESS--HTVINKDKGKSIMQEDHSQHNASIATLF------------------

Query:  ----------PYTKRIDNLRMPTGYQPPKFQQFDGKGNPKQHVAHFVETCENA
                  PYTKRIDNLRMP GYQPPKFQQFDGKGNPKQHVAHF+ETCE A
Subjt:  ----------PYTKRIDNLRMPTGYQPPKFQQFDGKGNPKQHVAHFVETCENA

A0A5D3CSH0 Ty3-gypsy retrotransposon protein1.8e-3558.17Show/hide
Query:  MSVMMTNTSTSEERLAECEKKISMLLEVVKEKNDEINSLKNQIESRDVVESS--HTVINKDKGKSIMQEDHSQHNASIATLF------------------
        MSVM+TN  TSE R+AE EKK++ML++VV+E++ EI  LKN IESRD  ESS  HTV N DKGK++MQE   Q+  SIA+L                   
Subjt:  MSVMMTNTSTSEERLAECEKKISMLLEVVKEKNDEINSLKNQIESRDVVESS--HTVINKDKGKSIMQEDHSQHNASIATLF------------------

Query:  ----------PYTKRIDNLRMPTGYQPPKFQQFDGKGNPKQHVAHFVETCENA
                  PYTKRIDNLRMP GYQPPKFQQFDGKGNPKQHVAHF+ETCE A
Subjt:  ----------PYTKRIDNLRMPTGYQPPKFQQFDGKGNPKQHVAHFVETCENA

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCCGTGATGATGACTAATACGTCTACTAGCGAAGAAAGACTAGCTGAATGTGAAAAGAAGATTAGCATGTTATTGGAAGTAGTCAAAGAAAAGAATGATGAAATCAA
TTCTCTAAAGAACCAAATCGAAAGTCGAGATGTTGTTGAGTCTAGCCATACTGTCATTAACAAAGACAAGGGGAAATCCATCATGCAAGAAGATCATTCACAACATAATG
CTTCAATTGCTACACTGTTTCCATATACCAAGAGAATCGATAATCTGAGAATGCCTACTGGTTATCAACCACCAAAATTTCAACAATTCGACGGGAAGGGAAACCCAAAG
CAGCATGTTGCACACTTTGTTGAAACATGTGAAAATGCTTGCATTACAGAGGAGATTTCTGGTGAAGCAATTTGTTCGAACTTTGAAAGGGAATGCATTTGA
mRNA sequenceShow/hide mRNA sequence
ATGTCCGTGATGATGACTAATACGTCTACTAGCGAAGAAAGACTAGCTGAATGTGAAAAGAAGATTAGCATGTTATTGGAAGTAGTCAAAGAAAAGAATGATGAAATCAA
TTCTCTAAAGAACCAAATCGAAAGTCGAGATGTTGTTGAGTCTAGCCATACTGTCATTAACAAAGACAAGGGGAAATCCATCATGCAAGAAGATCATTCACAACATAATG
CTTCAATTGCTACACTGTTTCCATATACCAAGAGAATCGATAATCTGAGAATGCCTACTGGTTATCAACCACCAAAATTTCAACAATTCGACGGGAAGGGAAACCCAAAG
CAGCATGTTGCACACTTTGTTGAAACATGTGAAAATGCTTGCATTACAGAGGAGATTTCTGGTGAAGCAATTTGTTCGAACTTTGAAAGGGAATGCATTTGA
Protein sequenceShow/hide protein sequence
MSVMMTNTSTSEERLAECEKKISMLLEVVKEKNDEINSLKNQIESRDVVESSHTVINKDKGKSIMQEDHSQHNASIATLFPYTKRIDNLRMPTGYQPPKFQQFDGKGNPK
QHVAHFVETCENACITEEISGEAICSNFERECI