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Sed0016942 (gene) of Chayote v1 genome

Gene IDSed0016942
OrganismSechium edule (Chayote v1)
Descriptionzf-RVT domain-containing protein
Genome locationLG04:8913607..8914402
RNA-Seq ExpressionSed0016942
SyntenySed0016942
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR026960 - Reverse transcriptase zinc-binding domain
IPR036397 - Ribonuclease H superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
TXG50387.1 hypothetical protein EZV62_022911 [Acer yangbiense]5.8e-2026.38Show/hide
Query:  MSSFSEVMAQWWNCLWGMILPNKIKLFIWSLFNNFIPNRVNPVAKHVDPPIKCVVCGMEIEDSNHTFIRW-CRSRM-IWQPICPDIFRLHAASTFFQIFF
        + S S  ++ WW  LW   +PNK K+F W  FN ++P       + VD    C VC  + E   H  I W C S + +W+ +  D        + F    
Subjt:  MSSFSEVMAQWWNCLWGMILPNKIKLFIWSLFNNFIPNRVNPVAKHVDPPIKCVVCGMEIEDSNHTFIRW-CRSRM-IWQPICPDIFRLHAASTFFQIFF

Query:  IFASDKLSEAKFEVMCIALWAIWFDRNKTLHGENIPEVEVRVDWINNYVAEVYGVSR---------------------KLNVEAAVSVDRVGVGLGAIVR
        +     +    F ++ I  W +W +RN  +HG         V WI+N+  E    +                      K+N +A+  +     G+G I+R
Subjt:  IFASDKLSEAKFEVMCIALWAIWFDRNKTLHGENIPEVEVRVDWINNYVAEVYGVSR---------------------KLNVEAAVSVDRVGVGLGAIVR

Query:  DHQGRCWAASTTFLPQCLDLAAAEALALLYGLQMVVREGFSGVLVESDAKLIVE
        D++G   AA ++ +  C  +   EA A L G+ + +  G SGV++ESDA  +++
Subjt:  DHQGRCWAASTTFLPQCLDLAAAEALALLYGLQMVVREGFSGVLVESDAKLIVE

XP_030487586.1 uncharacterized protein LOC115704524 [Cannabis sativa]2.0e-2024.73Show/hide
Query:  SSFSEVMAQWWNCLWGMILPNKIKLFIWSLFNNFIPNRVNPVAKHVDPPIKCVVCGMEIEDSNHTFIRWCRSRMIWQ-------PICPDIFRLHAASTFF
        +S S    +WWN LW + LP K+K+F W + N+ +P  VN + + + P   C +C    E   H      R++ +W           P+I++L+     F
Subjt:  SSFSEVMAQWWNCLWGMILPNKIKLFIWSLFNNFIPNRVNPVAKHVDPPIKCVVCGMEIEDSNHTFIRWCRSRMIWQ-------PICPDIFRLHAASTFF

Query:  QIFFIFASDKLSEAKFEVMCIALWAIWFDRNKTLHGENIPEVEVRVDWINNYVAEVYGVS---------------------------------------R
         IF   A+   +     ++CI +W+IW +RNK +HG       +   + ++YV +    +                                        
Subjt:  QIFFIFASDKLSEAKFEVMCIALWAIWFDRNKTLHGENIPEVEVRVDWINNYVAEVYGVS---------------------------------------R

Query:  KLNVEAAVSVDRVGVGLGAIVRDHQGRCWAASTTFLPQCLDLAAAEALALLYGLQMVVREGFSGVLVESDAKLIVEGID
        KLNV+AA   D   +G+GA+VRD+ G    A +  LP C      EA+ L++ LQ ++        +E+D+ ++   I+
Subjt:  KLNVEAAVSVDRVGVGLGAIVRDHQGRCWAASTTFLPQCLDLAAAEALALLYGLQMVVREGFSGVLVESDAKLIVEGID

XP_030508858.1 uncharacterized protein LOC115723499 [Cannabis sativa]1.2e-2025.86Show/hide
Query:  VMAQWWNCLWGMILPNKIKLFIWSLFNNFIPNRVNPVAKHVDPPIKCVVCGMEIEDSNHTFIRWCRSRMIWQPICPDIFRLHAASTFFQIFFIFASDKLS
        V   WW+  W + LP+K+++F+W +F+N IP       KH+     C +C  + E   H      R++ +W+     +    AA++  + F  +ASD  S
Subjt:  VMAQWWNCLWGMILPNKIKLFIWSLFNNFIPNRVNPVAKHVDPPIKCVVCGMEIEDSNHTFIRWCRSRMIWQPICPDIFRLHAASTFFQIFFIFASDKLS

Query:  EAKFEVMCIALWAIWFDRNKTLHGENIPE----VEVRVDWINNY-VAEVYGVSR-------------------------------KLNVEAAVSVDRVGV
         + FE      W+IW++RN   H ++  +    +    D++  Y  A+   VS                                KLN +AA +     +
Subjt:  EAKFEVMCIALWAIWFDRNKTLHGENIPE----VEVRVDWINNY-VAEVYGVSR-------------------------------KLNVEAAVSVDRVGV

Query:  GLGAIVRDHQGRCWAASTTFLPQCLDLAAAEALALLYGLQMVVREGFSGVLVESDAKLIVEGI
        GLGA++RD  G   AA +  +  C      EA AL++ LQ ++  G +  ++E+D+ L+V+G+
Subjt:  GLGAIVRDHQGRCWAASTTFLPQCLDLAAAEALALLYGLQMVVREGFSGVLVESDAKLIVEGI

XP_042950144.1 uncharacterized protein LOC122282259 [Carya illinoinensis]1.8e-2126.69Show/hide
Query:  SSFSEVMAQWWNCLWGMILPNKIKLFIWSLFNNFIPNRVNPVAKHVDPPIKCVVCGMEIEDSNHTFIRWCRSRMIWQPICPDIFRLHAASTFFQIFFIFA
        SS S  +   W  +W M LP KI++F W L  + +P  +N + KHVD   KC +C  + ED +   + + +    W+   P +F +H    F  +     
Subjt:  SSFSEVMAQWWNCLWGMILPNKIKLFIWSLFNNFIPNRVNPVAKHVDPPIKCVVCGMEIEDSNHTFIRWCRSRMIWQPICPDIFRLHAASTFFQIFFIFA

Query:  SDKLSEAKFEVMCIALWAIWFDRNKTLHGENIPEVEVRVDWINNYVAEVYGVSR---------------------KLNVEAAVSVDRVGVGLGAIVRDHQ
         +K +  + +  C+  W  W+ RN+  H   +  ++  VD   +  +     S+                     KLN++ A+  D+   G+GA++RD +
Subjt:  SDKLSEAKFEVMCIALWAIWFDRNKTLHGENIPEVEVRVDWINNYVAEVYGVSR---------------------KLNVEAAVSVDRVGVGLGAIVRDHQ

Query:  GRCWAASTTFLPQCLDLAAAEALALLYGLQMVVREGFSGVLVESDAKLIVE
        G    A++       +    E +A+L GLQ+ ++ G S ++VESD KL+VE
Subjt:  GRCWAASTTFLPQCLDLAAAEALALLYGLQMVVREGFSGVLVESDAKLIVE

XP_042965942.1 uncharacterized protein LOC122299620 [Carya illinoinensis]1.1e-2126.69Show/hide
Query:  SSFSEVMAQWWNCLWGMILPNKIKLFIWSLFNNFIPNRVNPVAKHVDPPIKCVVCGMEIEDSNHTFIRWCRSRMIWQPICPDIFRLHAASTFFQIFFIFA
        SS S  +   W  +W M LP KI++F W L  + +P  +N + +HVD   KC +C  + ED +H  +   +    W+   P +F +     F  +     
Subjt:  SSFSEVMAQWWNCLWGMILPNKIKLFIWSLFNNFIPNRVNPVAKHVDPPIKCVVCGMEIEDSNHTFIRWCRSRMIWQPICPDIFRLHAASTFFQIFFIFA

Query:  SDKLSEAKFEVMCIALWAIWFDRNKTLHGENIPEVEVRVDWINNYVAEVYGVSR---------------------KLNVEAAVSVDRVGVGLGAIVRDHQ
         +K +  + +  C+  W+ W+ RN+ +H   +  ++  VD   +  +     S+                     KLNV+ A+  D+   G+GA++RD +
Subjt:  SDKLSEAKFEVMCIALWAIWFDRNKTLHGENIPEVEVRVDWINNYVAEVYGVSR---------------------KLNVEAAVSVDRVGVGLGAIVRDHQ

Query:  GRCWAASTTFLPQCLDLAAAEALALLYGLQMVVREGFSGVLVESDAKLIVE
        G    A++       +    E +A+L GLQ+ ++ G S ++VESD KL+VE
Subjt:  GRCWAASTTFLPQCLDLAAAEALALLYGLQMVVREGFSGVLVESDAKLIVE

TrEMBL top hitse value%identityAlignment
A0A6J1DX30 uncharacterized protein LOC1110248743.1e-1928.29Show/hide
Query:  WNCLWGMILPNKIKLFIWSLFNNFIPNRVNPVAKHVDPPIKCVVCGMEIEDSNHTFIRWCRSRMIWQPICPDIFRLHAASTF-FQIFFIFASDKLSEAKF
        WN +W + +P KIK+FIW   +  IP   N + + +     C +CG   E   H F    R+R IW+ + P +  L A     F   +   +++L     
Subjt:  WNCLWGMILPNKIKLFIWSLFNNFIPNRVNPVAKHVDPPIKCVVCGMEIEDSNHTFIRWCRSRMIWQPICPDIFRLHAASTF-FQIFFIFASDKLSEAKF

Query:  EVMCIALWAIWFDRNKTLHGENIPEVEVRVDWI------------NNY----------VAEVY----GVSRKLNVEAAVSVDRVGVGLGAIVRDHQGRCW
         +  I  W IW DRN  +HG+ +  VE + +W+            +NY          V + +     VS KLN +AA          G I+RD      
Subjt:  EVMCIALWAIWFDRNKTLHGENIPEVEVRVDWI------------NNY----------VAEVY----GVSRKLNVEAAVSVDRVGVGLGAIVRDHQGRCW

Query:  AASTTFLPQCLDLAAAEALALLYGLQMVVREGFSGVLVESDAKLIVEGIDN
        AA++  +P  L    AE   +L GL+      F+ + VESD+ L ++ I N
Subjt:  AASTTFLPQCLDLAAAEALALLYGLQMVVREGFSGVLVESDAKLIVEGIDN

A0A803NJJ8 Uncharacterized protein5.6e-2125.86Show/hide
Query:  VMAQWWNCLWGMILPNKIKLFIWSLFNNFIPNRVNPVAKHVDPPIKCVVCGMEIEDSNHTFIRWCRSRMIWQPICPDIFRLHAASTFFQIFFIFASDKLS
        V   WW+  W + LP+K+++F+W +F+N IP       KH+     C +C  + E   H      R++ +W+     +    AA++  + F  +ASD  S
Subjt:  VMAQWWNCLWGMILPNKIKLFIWSLFNNFIPNRVNPVAKHVDPPIKCVVCGMEIEDSNHTFIRWCRSRMIWQPICPDIFRLHAASTFFQIFFIFASDKLS

Query:  EAKFEVMCIALWAIWFDRNKTLHGENIPE----VEVRVDWINNY-VAEVYGVSR-------------------------------KLNVEAAVSVDRVGV
         + FE      W+IW++RN   H ++  +    +    D++  Y  A+   VS                                KLN +AA +     +
Subjt:  EAKFEVMCIALWAIWFDRNKTLHGENIPE----VEVRVDWINNY-VAEVYGVSR-------------------------------KLNVEAAVSVDRVGV

Query:  GLGAIVRDHQGRCWAASTTFLPQCLDLAAAEALALLYGLQMVVREGFSGVLVESDAKLIVEGI
        GLGA++RD  G   AA +  +  C      EA AL++ LQ ++  G +  ++E+D+ L+V+G+
Subjt:  GLGAIVRDHQGRCWAASTTFLPQCLDLAAAEALALLYGLQMVVREGFSGVLVESDAKLIVEGI

A0A803NY29 Uncharacterized protein9.6e-2124.73Show/hide
Query:  SSFSEVMAQWWNCLWGMILPNKIKLFIWSLFNNFIPNRVNPVAKHVDPPIKCVVCGMEIEDSNHTFIRWCRSRMIWQ-------PICPDIFRLHAASTFF
        +S S    +WWN LW + LP K+K+F W + N+ +P  VN + + + P   C +C    E   H      R++ +W           P+I++L+     F
Subjt:  SSFSEVMAQWWNCLWGMILPNKIKLFIWSLFNNFIPNRVNPVAKHVDPPIKCVVCGMEIEDSNHTFIRWCRSRMIWQ-------PICPDIFRLHAASTFF

Query:  QIFFIFASDKLSEAKFEVMCIALWAIWFDRNKTLHGENIPEVEVRVDWINNYVAEVYGVS---------------------------------------R
         IF   A+   +     ++CI +W+IW +RNK +HG       +   + ++YV +    +                                        
Subjt:  QIFFIFASDKLSEAKFEVMCIALWAIWFDRNKTLHGENIPEVEVRVDWINNYVAEVYGVS---------------------------------------R

Query:  KLNVEAAVSVDRVGVGLGAIVRDHQGRCWAASTTFLPQCLDLAAAEALALLYGLQMVVREGFSGVLVESDAKLIVEGID
        KLNV+AA   D   +G+GA+VRD+ G    A +  LP C      EA+ L++ LQ ++        +E+D+ ++   I+
Subjt:  KLNVEAAVSVDRVGVGLGAIVRDHQGRCWAASTTFLPQCLDLAAAEALALLYGLQMVVREGFSGVLVESDAKLIVEGID

A0A803QEQ9 Uncharacterized protein1.1e-1925.83Show/hide
Query:  SSFSEVMAQWWNCLWGMILPNKIKLFIWSLFNNFIPNRVNPVAKHVDPPIKCVVCGMEIEDSNHTFIRWCRSRMIWQPICPDI-FRLHAASTFFQIFFIF
        S+FS     WW   W + LP+K+++F+W +++N +P       KH+     C +C M+ E  NH      R++ +W      + F+L A ST  + F ++
Subjt:  SSFSEVMAQWWNCLWGMILPNKIKLFIWSLFNNFIPNRVNPVAKHVDPPIKCVVCGMEIEDSNHTFIRWCRSRMIWQPICPDI-FRLHAASTFFQIFFIF

Query:  ASDKLSEAKFEVMCIALWAIWFDRNKTLHGENIPEVEVRV--------------------------------------DWINNYVAEVYGVSRKLNVEAA
        AS   S  +FE+     W+IW++RN   HG+ +P++   +                                        ++ ++A   G   KLN +AA
Subjt:  ASDKLSEAKFEVMCIALWAIWFDRNKTLHGENIPEVEVRV--------------------------------------DWINNYVAEVYGVSRKLNVEAA

Query:  VSVDRVGVGLGAIVRDHQGRCWAASTTFLPQCLDLAAAEALALLYGLQMVVREGFSGVLVESDAKLIVEGI
         +     +G+GA++RD  G   AA +     C      EA AL   LQ ++  G +  ++E+D+ L+V+G+
Subjt:  VSVDRVGVGLGAIVRDHQGRCWAASTTFLPQCLDLAAAEALALLYGLQMVVREGFSGVLVESDAKLIVEGI

A0A803QH76 Uncharacterized protein5.3e-1925.56Show/hide
Query:  SFSEVMAQWWNCLWGMILPNKIKLFIWSLFNNFIPNRVNPVAKHVDPPIKCVVCGMEIEDSNHTFIRWCRSRMIWQPICPDIFRLHAAS-TFFQIFFIFA
        S S    +WWN LW + LP K+K+F W L N+ +P  VN   + +     C +C    E   H   R  R++++W     ++F  + A+   F I+   A
Subjt:  SFSEVMAQWWNCLWGMILPNKIKLFIWSLFNNFIPNRVNPVAKHVDPPIKCVVCGMEIEDSNHTFIRWCRSRMIWQPICPDIFRLHAAS-TFFQIFFIFA

Query:  SDKLSEAKFEVMCIALWAIWFDRNKTLHGENIPEVEVRVDWINNYVAE----------VYGVSR---------------------------KLNVEAAVS
        +   ++   E++   LW IW +RNK +HG       +   +  NY+ +            G+S                            KLNV+AA +
Subjt:  SDKLSEAKFEVMCIALWAIWFDRNKTLHGENIPEVEVRVDWINNYVAE----------VYGVSR---------------------------KLNVEAAVS

Query:  VDRVGVGLGAIVRDHQGRCWAASTTFLPQCLDLAAAEALALLYGLQMVVREGFSGVLVESDAKLIVEGID
             +G GAI+RDH G   A  +   P        E  AL + LQ  ++       +E+DA ++V  ++
Subjt:  VDRVGVGLGAIVRDHQGRCWAASTTFLPQCLDLAAAEALALLYGLQMVVREGFSGVLVESDAKLIVEGID

SwissProt top hitse value%identityAlignment
P0C2F6 Putative ribonuclease H protein At1g657509.0e-0821.79Show/hide
Query:  MAQWWNCLWGMILPNKIKLFIWSLFNNFIPNRVNPVAKHVDPPIKCVVCGMEIEDSNHTFIRWCRSRM-IWQPICPDIFRLHAASTFFQIFFIFASDKLS
        MA ++NCLW + +P ++K F+W + N  +        +H+     C VC   +E   H  +R C +++ IW  + P   +      F +  F +  D L 
Subjt:  MAQWWNCLWGMILPNKIKLFIWSLFNNFIPNRVNPVAKHVDPPIKCVVCGMEIEDSNHTFIRWCRSRM-IWQPICPDIFRLHAASTFFQIFFIFASDKLS

Query:  EAK-------FEVMCIALWAIWFDRNKTLHGENIPEVEVRVDWINNYVAEVY---------GVSR-----------------KLNVEAAVSVDRVGVGLG
        +           +  + +W  W  R   + GEN  +   RV ++  +  EVY         G+++                 K+N + A   +      G
Subjt:  EAK-------FEVMCIALWAIWFDRNKTLHGENIPEVEVRVDWINNYVAEVY---------GVSR-----------------KLNVEAAVSVDRVGVGLG

Query:  AIVRDHQGRCWAASTTFLPQCLDLAAAEALALLYGLQMVVREGFSGVLVESDAKLIV
         ++RD  G      +  + +C     AE   + YGL     +    V +E D+++IV
Subjt:  AIVRDHQGRCWAASTTFLPQCLDLAAAEALALLYGLQMVVREGFSGVLVESDAKLIV

Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGATGTCTTCCTTTTCTGAGGTTATGGCTCAGTGGTGGAACTGCTTATGGGGGATGATCCTTCCAAATAAAATTAAGCTGTTCATTTGGAGTCTTTTCAACAATTTCAT
TCCCAATAGAGTTAACCCAGTTGCTAAGCATGTTGATCCTCCCATAAAATGTGTTGTGTGTGGAATGGAGATCGAGGATTCAAATCATACCTTTATACGGTGGTGCAGAT
CCAGGATGATTTGGCAACCTATTTGTCCAGATATTTTTAGGCTTCATGCTGCTTCTACTTTTTTTCAAATTTTTTTTATATTTGCTAGCGACAAGTTAAGTGAAGCTAAG
TTTGAGGTTATGTGTATTGCTCTCTGGGCTATCTGGTTTGACAGAAACAAAACTTTACATGGTGAGAACATTCCTGAAGTTGAGGTGAGAGTGGACTGGATTAATAATTA
CGTTGCTGAAGTCTATGGGGTTAGTCGAAAGCTCAATGTTGAGGCTGCCGTTTCAGTTGATCGGGTTGGAGTTGGGTTGGGTGCTATCGTTCGTGACCACCAGGGGCGTT
GTTGGGCGGCTTCAACAACTTTTCTTCCCCAATGTCTAGACCTAGCTGCTGCGGAAGCTCTTGCCCTCCTATATGGTTTGCAAATGGTGGTTCGAGAAGGCTTTTCTGGT
GTCTTAGTTGAATCTGATGCAAAGCTGATAGTTGAAGGGATTGATAACCCTCGGTTGCTCCTCTAA
mRNA sequenceShow/hide mRNA sequence
ATGATGTCTTCCTTTTCTGAGGTTATGGCTCAGTGGTGGAACTGCTTATGGGGGATGATCCTTCCAAATAAAATTAAGCTGTTCATTTGGAGTCTTTTCAACAATTTCAT
TCCCAATAGAGTTAACCCAGTTGCTAAGCATGTTGATCCTCCCATAAAATGTGTTGTGTGTGGAATGGAGATCGAGGATTCAAATCATACCTTTATACGGTGGTGCAGAT
CCAGGATGATTTGGCAACCTATTTGTCCAGATATTTTTAGGCTTCATGCTGCTTCTACTTTTTTTCAAATTTTTTTTATATTTGCTAGCGACAAGTTAAGTGAAGCTAAG
TTTGAGGTTATGTGTATTGCTCTCTGGGCTATCTGGTTTGACAGAAACAAAACTTTACATGGTGAGAACATTCCTGAAGTTGAGGTGAGAGTGGACTGGATTAATAATTA
CGTTGCTGAAGTCTATGGGGTTAGTCGAAAGCTCAATGTTGAGGCTGCCGTTTCAGTTGATCGGGTTGGAGTTGGGTTGGGTGCTATCGTTCGTGACCACCAGGGGCGTT
GTTGGGCGGCTTCAACAACTTTTCTTCCCCAATGTCTAGACCTAGCTGCTGCGGAAGCTCTTGCCCTCCTATATGGTTTGCAAATGGTGGTTCGAGAAGGCTTTTCTGGT
GTCTTAGTTGAATCTGATGCAAAGCTGATAGTTGAAGGGATTGATAACCCTCGGTTGCTCCTCTAA
Protein sequenceShow/hide protein sequence
MMSSFSEVMAQWWNCLWGMILPNKIKLFIWSLFNNFIPNRVNPVAKHVDPPIKCVVCGMEIEDSNHTFIRWCRSRMIWQPICPDIFRLHAASTFFQIFFIFASDKLSEAK
FEVMCIALWAIWFDRNKTLHGENIPEVEVRVDWINNYVAEVYGVSRKLNVEAAVSVDRVGVGLGAIVRDHQGRCWAASTTFLPQCLDLAAAEALALLYGLQMVVREGFSG
VLVESDAKLIVEGIDNPRLLL