; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Sed0016947 (gene) of Chayote v1 genome

Gene IDSed0016947
OrganismSechium edule (Chayote v1)
Descriptionexosome complex component RRP41-like
Genome locationLG05:39529226..39534505
RNA-Seq ExpressionSed0016947
SyntenySed0016947
Gene Ontology termsGO:0090305 - nucleic acid phosphodiester bond hydrolysis (biological process)
GO:0071051 - polyadenylation-dependent snoRNA 3'-end processing (biological process)
GO:0071028 - nuclear mRNA surveillance (biological process)
GO:0009845 - seed germination (biological process)
GO:0016075 - rRNA catabolic process (biological process)
GO:0034475 - U4 snRNA 3'-end processing (biological process)
GO:0034427 - nuclear-transcribed mRNA catabolic process, exonucleolytic, 3'-5' (biological process)
GO:0000177 - cytoplasmic exosome (RNase complex) (cellular component)
GO:0005730 - nucleolus (cellular component)
GO:0000176 - nuclear exosome (RNase complex) (cellular component)
GO:0016740 - transferase activity (molecular function)
GO:0008408 - 3'-5' exonuclease activity (molecular function)
InterPro domainsIPR001247 - Exoribonuclease, phosphorolytic domain 1
IPR015847 - Exoribonuclease, phosphorolytic domain 2
IPR020568 - Ribosomal protein S5 domain 2-type fold
IPR027408 - PNPase/RNase PH domain superfamily
IPR036345 - Exoribonuclease, PH domain 2 superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6570792.1 Exosome complex component RRP41-like protein, partial [Cucurbita argyrosperma subsp. sororia]3.2e-13396.12Show/hide
Query:  MAKKATPATTTYSPSPTTLKTRPPIFRTDDVDWVRPDGRAFHQCRPAFFRTGAVNAASGSAYAEFGNTKVIVSVFGPRESKKAMMYSDIGRLNCSVSYTT
        MAKKATPAT+TYSPSPTT KTRPPIFR+DDVDWVRPDGR+FHQCRPAFFRTGAVNAASGSAYAEFGNTKVIVSVFGPRESKKAMMYSDIGRLNCSVSYTT
Subjt:  MAKKATPATTTYSPSPTTLKTRPPIFRTDDVDWVRPDGRAFHQCRPAFFRTGAVNAASGSAYAEFGNTKVIVSVFGPRESKKAMMYSDIGRLNCSVSYTT

Query:  FSTPVRGQGSENKEFSSMLHKALEGAIILETFPKTTVDVFALVLESGGSDLPVVISCASLALADAGIMLYDLVASVSVSCFGKNLLIDPMLEEENYQDGS
        FSTPVRGQGSENKEFSSMLHKALEGAIILETFPKTTVDVFALVLESGGSDLPVVISCASLALADAGIMLYDLVASVSVSCFGKNLLIDP LEEENYQDGS
Subjt:  FSTPVRGQGSENKEFSSMLHKALEGAIILETFPKTTVDVFALVLESGGSDLPVVISCASLALADAGIMLYDLVASVSVSCFGKNLLIDPMLEEENYQDGS

Query:  LMITCMASRYEVTQLTITGEWSTAKINEGMQLCLDASCKLVEIMRTCLKES-ATISEE
        LMITCM SRYEVTQLTITGEWSTAKINEGMQLCLDASCKLV IMR+CLKES AT+SEE
Subjt:  LMITCMASRYEVTQLTITGEWSTAKINEGMQLCLDASCKLVEIMRTCLKES-ATISEE

XP_022140702.1 exosome complex component RRP41-like [Momordica charantia]3.2e-13394.94Show/hide
Query:  MAKKATPATTTYSPSPTTLKTRPPIFRTDDVDWVRPDGRAFHQCRPAFFRTGAVNAASGSAYAEFGNTKVIVSVFGPRESKKAMMYSDIGRLNCSVSYTT
        MAKKATPATTTYSPSPT  KTRPPIFR+D+ DWVRPDGR FHQCRPAFFRTGAVNAASGSAYAEFGNTKVIVSVFGPRESKKAMMYSDIGRLNCSVSYTT
Subjt:  MAKKATPATTTYSPSPTTLKTRPPIFRTDDVDWVRPDGRAFHQCRPAFFRTGAVNAASGSAYAEFGNTKVIVSVFGPRESKKAMMYSDIGRLNCSVSYTT

Query:  FSTPVRGQGSENKEFSSMLHKALEGAIILETFPKTTVDVFALVLESGGSDLPVVISCASLALADAGIMLYDLVASVSVSCFGKNLLIDPMLEEENYQDGS
        F+TPVRGQGSENKEFSSMLHKALEGAIILETFPKTTVD+FALVLESGGSDLPVVISCASLALADAGIMLYDLVASVSVSCFGKNLLIDPMLEEENYQDGS
Subjt:  FSTPVRGQGSENKEFSSMLHKALEGAIILETFPKTTVDVFALVLESGGSDLPVVISCASLALADAGIMLYDLVASVSVSCFGKNLLIDPMLEEENYQDGS

Query:  LMITCMASRYEVTQLTITGEWSTAKINEGMQLCLDASCKLVEIMRTCLKESATISEE
        LMITCM SRYEVTQLTITGEWSTAKINEGMQLCLDASCKLV+IMR+CLKESATIS++
Subjt:  LMITCMASRYEVTQLTITGEWSTAKINEGMQLCLDASCKLVEIMRTCLKESATISEE

XP_022944714.1 exosome complex component RRP41-like [Cucurbita moschata]3.2e-13396.12Show/hide
Query:  MAKKATPATTTYSPSPTTLKTRPPIFRTDDVDWVRPDGRAFHQCRPAFFRTGAVNAASGSAYAEFGNTKVIVSVFGPRESKKAMMYSDIGRLNCSVSYTT
        MAKKATPATTTYSPSPTT KTRPPIFR+DDVDWVRPDGR+FHQCRPAFFRTGAVNAASGSAYAEFGNTKVIVSVFGPRESKKAMMYSDIGRLNCSVSYTT
Subjt:  MAKKATPATTTYSPSPTTLKTRPPIFRTDDVDWVRPDGRAFHQCRPAFFRTGAVNAASGSAYAEFGNTKVIVSVFGPRESKKAMMYSDIGRLNCSVSYTT

Query:  FSTPVRGQGSENKEFSSMLHKALEGAIILETFPKTTVDVFALVLESGGSDLPVVISCASLALADAGIMLYDLVASVSVSCFGKNLLIDPMLEEENYQDGS
        FSTPVRGQGSENKEFSSMLHKALEGAII ETFPKTTVDVFALVLESGGSDLPVVISCASLALADAGIMLYDLVASVSVSCFGKNLLIDP LEEENYQDGS
Subjt:  FSTPVRGQGSENKEFSSMLHKALEGAIILETFPKTTVDVFALVLESGGSDLPVVISCASLALADAGIMLYDLVASVSVSCFGKNLLIDPMLEEENYQDGS

Query:  LMITCMASRYEVTQLTITGEWSTAKINEGMQLCLDASCKLVEIMRTCLKES-ATISEE
        LMITCM SRYEVTQLTITGEWSTAKINEGMQLCLDASCKLV IMR+CLKES AT+SEE
Subjt:  LMITCMASRYEVTQLTITGEWSTAKINEGMQLCLDASCKLVEIMRTCLKES-ATISEE

XP_022986160.1 exosome complex component RRP41-like [Cucurbita maxima]1.4e-13396.51Show/hide
Query:  MAKKATPATTTYSPSPTTLKTRPPIFRTDDVDWVRPDGRAFHQCRPAFFRTGAVNAASGSAYAEFGNTKVIVSVFGPRESKKAMMYSDIGRLNCSVSYTT
        MAKKATPAT+TYSPSPTT KTRPPIFR+DDVDWVRPDGRAFHQCRPAFFRTGAVNAASGSAYAEFGNTKVIVSVFGPRESKKAMMYSDIGRLNCSVSYTT
Subjt:  MAKKATPATTTYSPSPTTLKTRPPIFRTDDVDWVRPDGRAFHQCRPAFFRTGAVNAASGSAYAEFGNTKVIVSVFGPRESKKAMMYSDIGRLNCSVSYTT

Query:  FSTPVRGQGSENKEFSSMLHKALEGAIILETFPKTTVDVFALVLESGGSDLPVVISCASLALADAGIMLYDLVASVSVSCFGKNLLIDPMLEEENYQDGS
        FSTPVRGQGSENKEFSSMLHKALEGAIILETFPKTTVDVFALVLESGGSDLPVVISCASLALADAGIMLYDLVASVSVSCFGKNLLIDP LEEENYQDGS
Subjt:  FSTPVRGQGSENKEFSSMLHKALEGAIILETFPKTTVDVFALVLESGGSDLPVVISCASLALADAGIMLYDLVASVSVSCFGKNLLIDPMLEEENYQDGS

Query:  LMITCMASRYEVTQLTITGEWSTAKINEGMQLCLDASCKLVEIMRTCLKES-ATISEE
        LMITCM SRYEVTQLTITGEWSTAKINEGMQLCLDASCKLV IMR+CLKES AT+SEE
Subjt:  LMITCMASRYEVTQLTITGEWSTAKINEGMQLCLDASCKLVEIMRTCLKES-ATISEE

XP_023512894.1 exosome complex component RRP41-like isoform X1 [Cucurbita pepo subsp. pepo]2.4e-13396.12Show/hide
Query:  MAKKATPATTTYSPSPTTLKTRPPIFRTDDVDWVRPDGRAFHQCRPAFFRTGAVNAASGSAYAEFGNTKVIVSVFGPRESKKAMMYSDIGRLNCSVSYTT
        MAKKATPAT+TYSPSPTT KTRPPIFR+DDVDWVRPDGR+FHQCRPAFFRTGAVNAASGSAYAEFGNTKVIVSVFGPRESKKAMMYSDIGRLNCSVSYTT
Subjt:  MAKKATPATTTYSPSPTTLKTRPPIFRTDDVDWVRPDGRAFHQCRPAFFRTGAVNAASGSAYAEFGNTKVIVSVFGPRESKKAMMYSDIGRLNCSVSYTT

Query:  FSTPVRGQGSENKEFSSMLHKALEGAIILETFPKTTVDVFALVLESGGSDLPVVISCASLALADAGIMLYDLVASVSVSCFGKNLLIDPMLEEENYQDGS
        FSTPVRGQGSENKEFSSMLHKALEGAIILETFPKTTVDVFALVLESGGSDLPVVISCASLALADAGIMLYDLVASVSVSCFGKNLLIDP LEEENYQDGS
Subjt:  FSTPVRGQGSENKEFSSMLHKALEGAIILETFPKTTVDVFALVLESGGSDLPVVISCASLALADAGIMLYDLVASVSVSCFGKNLLIDPMLEEENYQDGS

Query:  LMITCMASRYEVTQLTITGEWSTAKINEGMQLCLDASCKLVEIMRTCLKES-ATISEE
        LMITCM SRYEVTQLTITGEWSTAKINEGMQLCLDASCKLV IMR+CLKES AT+SEE
Subjt:  LMITCMASRYEVTQLTITGEWSTAKINEGMQLCLDASCKLVEIMRTCLKES-ATISEE

TrEMBL top hitse value%identityAlignment
A0A0A0KEK6 Uncharacterized protein7.9e-13093.41Show/hide
Query:  MAKKATPATTTYSPSPTTLKTRPPIFRTDDVDWVRPDGRAFHQCRPAFFRTGAVNAASGSAYAEFGNTKVIVSVFGPRESKKAMMYSDIGRLNCSVSYTT
        MAKKATP TTTYSPSPT  KTRP +FRTDDV+WVRPDGR FHQCRPAFFRTGAVNAASGSAYAEFGNTKVIVSVFGPRESKKAMMYSDIGRLNCSVSYTT
Subjt:  MAKKATPATTTYSPSPTTLKTRPPIFRTDDVDWVRPDGRAFHQCRPAFFRTGAVNAASGSAYAEFGNTKVIVSVFGPRESKKAMMYSDIGRLNCSVSYTT

Query:  FSTPVRGQGSENKEFSSMLHKALEGAIILETFPKTTVDVFALVLESGGSDLPVVISCASLALADAGIMLYDLVASVSVSCFGKNLLIDPMLEEENYQDGS
        FSTPVRGQGSENK+FSSMLHK+LEGAIILE+FPKTTVDVFALVLESGGSDLPVVISCASLALADAGIMLYDLVASVSVSCFGKNLLID +LEEENYQDGS
Subjt:  FSTPVRGQGSENKEFSSMLHKALEGAIILETFPKTTVDVFALVLESGGSDLPVVISCASLALADAGIMLYDLVASVSVSCFGKNLLIDPMLEEENYQDGS

Query:  LMITCMASRYEVTQLTITGEWSTAKINEGMQLCLDASCKLVEIMRTCLKESA-TISEE
        LMITCM SRYEVTQLTITGEW+T+KINEGMQLCLDASCKLVEIMR+CLKESA TISEE
Subjt:  LMITCMASRYEVTQLTITGEWSTAKINEGMQLCLDASCKLVEIMRTCLKESA-TISEE

A0A1S3CKF3 exosome complex component RRP41-like4.2e-13194.59Show/hide
Query:  MAKKATP-ATTTYSPSPTTLKTRPPIFRTDDVDWVRPDGRAFHQCRPAFFRTGAVNAASGSAYAEFGNTKVIVSVFGPRESKKAMMYSDIGRLNCSVSYT
        MAKKATP  TTTYSPSPT  KTRPP+FRTDDV+WVRPDGR FHQCRPAFFRTGAVNAASGSAYAEFGNTKVIVSVFGPRESKKAMMYSDIGRLNCSVSYT
Subjt:  MAKKATP-ATTTYSPSPTTLKTRPPIFRTDDVDWVRPDGRAFHQCRPAFFRTGAVNAASGSAYAEFGNTKVIVSVFGPRESKKAMMYSDIGRLNCSVSYT

Query:  TFSTPVRGQGSENKEFSSMLHKALEGAIILETFPKTTVDVFALVLESGGSDLPVVISCASLALADAGIMLYDLVASVSVSCFGKNLLIDPMLEEENYQDG
        TFSTPVRGQGSENKEFSSMLHK+LEGAIILETFPKTTVDVFALVLESGGSDLPVVISCASLALADAGIMLYDLVASVSVSCFGKNLLIDP+LEEENYQDG
Subjt:  TFSTPVRGQGSENKEFSSMLHKALEGAIILETFPKTTVDVFALVLESGGSDLPVVISCASLALADAGIMLYDLVASVSVSCFGKNLLIDPMLEEENYQDG

Query:  SLMITCMASRYEVTQLTITGEWSTAKINEGMQLCLDASCKLVEIMRTCLKES-ATISEE
        SLMITCM SRYEVTQLTITGEW+T+KINEGMQLCLDASCKLVEIMR+CLKES ATISEE
Subjt:  SLMITCMASRYEVTQLTITGEWSTAKINEGMQLCLDASCKLVEIMRTCLKES-ATISEE

A0A6J1CHT0 exosome complex component RRP41-like1.5e-13394.94Show/hide
Query:  MAKKATPATTTYSPSPTTLKTRPPIFRTDDVDWVRPDGRAFHQCRPAFFRTGAVNAASGSAYAEFGNTKVIVSVFGPRESKKAMMYSDIGRLNCSVSYTT
        MAKKATPATTTYSPSPT  KTRPPIFR+D+ DWVRPDGR FHQCRPAFFRTGAVNAASGSAYAEFGNTKVIVSVFGPRESKKAMMYSDIGRLNCSVSYTT
Subjt:  MAKKATPATTTYSPSPTTLKTRPPIFRTDDVDWVRPDGRAFHQCRPAFFRTGAVNAASGSAYAEFGNTKVIVSVFGPRESKKAMMYSDIGRLNCSVSYTT

Query:  FSTPVRGQGSENKEFSSMLHKALEGAIILETFPKTTVDVFALVLESGGSDLPVVISCASLALADAGIMLYDLVASVSVSCFGKNLLIDPMLEEENYQDGS
        F+TPVRGQGSENKEFSSMLHKALEGAIILETFPKTTVD+FALVLESGGSDLPVVISCASLALADAGIMLYDLVASVSVSCFGKNLLIDPMLEEENYQDGS
Subjt:  FSTPVRGQGSENKEFSSMLHKALEGAIILETFPKTTVDVFALVLESGGSDLPVVISCASLALADAGIMLYDLVASVSVSCFGKNLLIDPMLEEENYQDGS

Query:  LMITCMASRYEVTQLTITGEWSTAKINEGMQLCLDASCKLVEIMRTCLKESATISEE
        LMITCM SRYEVTQLTITGEWSTAKINEGMQLCLDASCKLV+IMR+CLKESATIS++
Subjt:  LMITCMASRYEVTQLTITGEWSTAKINEGMQLCLDASCKLVEIMRTCLKESATISEE

A0A6J1FYV1 exosome complex component RRP41-like1.5e-13396.12Show/hide
Query:  MAKKATPATTTYSPSPTTLKTRPPIFRTDDVDWVRPDGRAFHQCRPAFFRTGAVNAASGSAYAEFGNTKVIVSVFGPRESKKAMMYSDIGRLNCSVSYTT
        MAKKATPATTTYSPSPTT KTRPPIFR+DDVDWVRPDGR+FHQCRPAFFRTGAVNAASGSAYAEFGNTKVIVSVFGPRESKKAMMYSDIGRLNCSVSYTT
Subjt:  MAKKATPATTTYSPSPTTLKTRPPIFRTDDVDWVRPDGRAFHQCRPAFFRTGAVNAASGSAYAEFGNTKVIVSVFGPRESKKAMMYSDIGRLNCSVSYTT

Query:  FSTPVRGQGSENKEFSSMLHKALEGAIILETFPKTTVDVFALVLESGGSDLPVVISCASLALADAGIMLYDLVASVSVSCFGKNLLIDPMLEEENYQDGS
        FSTPVRGQGSENKEFSSMLHKALEGAII ETFPKTTVDVFALVLESGGSDLPVVISCASLALADAGIMLYDLVASVSVSCFGKNLLIDP LEEENYQDGS
Subjt:  FSTPVRGQGSENKEFSSMLHKALEGAIILETFPKTTVDVFALVLESGGSDLPVVISCASLALADAGIMLYDLVASVSVSCFGKNLLIDPMLEEENYQDGS

Query:  LMITCMASRYEVTQLTITGEWSTAKINEGMQLCLDASCKLVEIMRTCLKES-ATISEE
        LMITCM SRYEVTQLTITGEWSTAKINEGMQLCLDASCKLV IMR+CLKES AT+SEE
Subjt:  LMITCMASRYEVTQLTITGEWSTAKINEGMQLCLDASCKLVEIMRTCLKES-ATISEE

A0A6J1JDA9 exosome complex component RRP41-like6.9e-13496.51Show/hide
Query:  MAKKATPATTTYSPSPTTLKTRPPIFRTDDVDWVRPDGRAFHQCRPAFFRTGAVNAASGSAYAEFGNTKVIVSVFGPRESKKAMMYSDIGRLNCSVSYTT
        MAKKATPAT+TYSPSPTT KTRPPIFR+DDVDWVRPDGRAFHQCRPAFFRTGAVNAASGSAYAEFGNTKVIVSVFGPRESKKAMMYSDIGRLNCSVSYTT
Subjt:  MAKKATPATTTYSPSPTTLKTRPPIFRTDDVDWVRPDGRAFHQCRPAFFRTGAVNAASGSAYAEFGNTKVIVSVFGPRESKKAMMYSDIGRLNCSVSYTT

Query:  FSTPVRGQGSENKEFSSMLHKALEGAIILETFPKTTVDVFALVLESGGSDLPVVISCASLALADAGIMLYDLVASVSVSCFGKNLLIDPMLEEENYQDGS
        FSTPVRGQGSENKEFSSMLHKALEGAIILETFPKTTVDVFALVLESGGSDLPVVISCASLALADAGIMLYDLVASVSVSCFGKNLLIDP LEEENYQDGS
Subjt:  FSTPVRGQGSENKEFSSMLHKALEGAIILETFPKTTVDVFALVLESGGSDLPVVISCASLALADAGIMLYDLVASVSVSCFGKNLLIDPMLEEENYQDGS

Query:  LMITCMASRYEVTQLTITGEWSTAKINEGMQLCLDASCKLVEIMRTCLKES-ATISEE
        LMITCM SRYEVTQLTITGEWSTAKINEGMQLCLDASCKLV IMR+CLKES AT+SEE
Subjt:  LMITCMASRYEVTQLTITGEWSTAKINEGMQLCLDASCKLVEIMRTCLKES-ATISEE

SwissProt top hitse value%identityAlignment
A2RVK7 Exosome complex component RRP41-like3.2e-10473.54Show/hide
Query:  MAKKATPATTTYSPSPTTLKTRPPIFRTDDVDWVRPDGRAFHQCRPAFFRTGAVNAASGSAYAEFGNTKVIVSVFGPRESKKAMMYSDIGRLNCSVSYTT
        MA K   AT TYSP     ++R PIF+  D+DW RPDGR FHQCRPA  +TGAV++ASGSAYAEFGNTKVIVSVFGPRESKKAM+YSD+GRLNC+VSYT 
Subjt:  MAKKATPATTTYSPSPTTLKTRPPIFRTDDVDWVRPDGRAFHQCRPAFFRTGAVNAASGSAYAEFGNTKVIVSVFGPRESKKAMMYSDIGRLNCSVSYTT

Query:  FSTPVRGQGSENKEFSSMLHKALEGAIILETFPKTTVDVFALVLESGGSDLPVVISCASLALADAGIMLYDLVASVSVSCFGKNLLIDPMLEEENYQDGS
        F++P  GQG+++KE+SSMLHKALEG I++ETFPKTTVDVFALVLESGGSDL V+ISCASLALADAGIM+YDL+ +VSVSC GK+L+IDP+ EEE  +DGS
Subjt:  FSTPVRGQGSENKEFSSMLHKALEGAIILETFPKTTVDVFALVLESGGSDLPVVISCASLALADAGIMLYDLVASVSVSCFGKNLLIDPMLEEENYQDGS

Query:  LMITCMASRYEVTQLTITGEWSTAKINEGMQLCLDASCKLVEIMRTCLKESATISEE
         M+TCM SRYE+TQLTITGEW+T  INE MQLCLDAS KL EIMR CLK+SA+ S+E
Subjt:  LMITCMASRYEVTQLTITGEWSTAKINEGMQLCLDASCKLVEIMRTCLKESATISEE

O26779 Exosome complex component Rrp413.5e-2631.67Show/hide
Query:  VRPDGRAFHQCRPAFFRTGAVNAASGSAYAEFGNTKVIVSVFGPRESK-KAMMYSDIGRLNCSVSYTTFSTPVR---GQGSENKEFSSMLHKALEGAIIL
        VR DGRAF + RP     G +  A GS+Y EFG  K++V+V+GPRE++ + +   D   + C  +   FS   R   G    + E S +  +AL  A+IL
Subjt:  VRPDGRAFHQCRPAFFRTGAVNAASGSAYAEFGNTKVIVSVFGPRESK-KAMMYSDIGRLNCSVSYTTFSTPVR---GQGSENKEFSSMLHKALEGAIIL

Query:  ETFPKTTVDVFALVLESGGSDLPVVISCASLALADAGIMLYDLVASVSVSCFGKNLLIDPMLEEENYQDGSLMITCMASRYEVTQLTITGEWSTAKINEG
        E FP++ +DVF  VLE+ G      I+ AS+ALADAGI + D+V + +    G  +++D   EE+      + +  +    E+T L   G  +  +    
Subjt:  ETFPKTTVDVFALVLESGGSDLPVVISCASLALADAGIMLYDLVASVSVSCFGKNLLIDPMLEEENYQDGSLMITCMASRYEVTQLTITGEWSTAKINEG

Query:  MQLCLDASCKLVEIMRTCLKE
        + L ++   ++ E+ +  L++
Subjt:  MQLCLDASCKLVEIMRTCLKE

O59223 Exosome complex component Rrp414.6e-2633.05Show/hide
Query:  RPPIFRTDDVDWVRPDGRAFHQCRPAFFRTGAVNAASGSAYAEFGNTKVIVSVFGPRE-SKKAMMYSDIGRLNCSVSYTTFSTPVR---GQGSENKEFSS
        +P   +  D +  R DGR  ++ RP   + G +  A+GSAY E+G  K+I +V+GPRE   K +   D   L    +   FS   R   G    + E S 
Subjt:  RPPIFRTDDVDWVRPDGRAFHQCRPAFFRTGAVNAASGSAYAEFGNTKVIVSVFGPRE-SKKAMMYSDIGRLNCSVSYTTFSTPVR---GQGSENKEFSS

Query:  MLHKALEGAIILETFPKTTVDVFALVLESGGSDLPVVISCASLALADAGIMLYDLVASVSVSCFGKNLLIDPMLEEENYQDGSLMITCMASRYEVTQLTI
        ++  ALE A+ILE FP+T++DVF  VL++        I+ ASLALADAGI + DLVA+ +       +++D   EE+NY +  + +  M  + ++T L +
Subjt:  MLHKALEGAIILETFPKTTVDVFALVLESGGSDLPVVISCASLALADAGIMLYDLVASVSVSCFGKNLLIDPMLEEENYQDGSLMITCMASRYEVTQLTI

Query:  TGEWSTAKINEGMQLCLDASCKLVEIMRTCLKE
         G  +  +  E ++L +  +  + +  R  LKE
Subjt:  TGEWSTAKINEGMQLCLDASCKLVEIMRTCLKE

Q6P0I8 Exosome complex component MTR33.4e-2937.04Show/hide
Query:  RPAFFRTGAVNAASGSAYAEFGNTKVIVSVFGPRES-KKAMMYSDIGRLNCSVSYTTFSTPVRG---QGSENKEFSSMLHKALEGAIILETFPKTTVDVF
        RP F R G V+ A GSAY E GNTK+I SV+GP+E+ ++       GRL C      FS   RG   QGSE ++ S+ L ++L   + L  +P++ +DV 
Subjt:  RPAFFRTGAVNAASGSAYAEFGNTKVIVSVFGPRES-KKAMMYSDIGRLNCSVSYTTFSTPVRG---QGSENKEFSSMLHKALEGAIILETFPKTTVDVF

Query:  ALVLESGGSDLPVVISCASLALADAGIMLYDLVASVSVSCFGKNLLIDPMLEE------ENYQD--GSLMITCMASRYEVTQLTITGEWSTAKINEGMQL
         +VLE+ GS L   ++CAS+ALADAGI +YD+V   ++   G   L+DP   E      E Y D  G + +  + +  +V+ L   GE     + E M+ 
Subjt:  ALVLESGGSDLPVVISCASLALADAGIMLYDLVASVSVSCFGKNLLIDPMLEE------ENYQD--GSLMITCMASRYEVTQLTITGEWSTAKINEGMQL

Query:  CLDASCKLVEIMRTCL
        C+D   KL  +++  L
Subjt:  CLDASCKLVEIMRTCL

Q8U0L9 Exosome complex component Rrp412.7e-2633.48Show/hide
Query:  RPPIFRTDDVDWVRPDGRAFHQCRPAFFRTGAVNAASGSAYAEFGNTKVIVSVFGPRE-SKKAMMYSDIGRLNCSVSYTTFSTPVR---GQGSENKEFSS
        +P   +  D +  R DGR  ++ RP   + G +  A+GSAY E+G  K+I +V+GPRE   K +   D   L    +   FS   R   G    + E S 
Subjt:  RPPIFRTDDVDWVRPDGRAFHQCRPAFFRTGAVNAASGSAYAEFGNTKVIVSVFGPRE-SKKAMMYSDIGRLNCSVSYTTFSTPVR---GQGSENKEFSS

Query:  MLHKALEGAIILETFPKTTVDVFALVLESGGSDLPVVISCASLALADAGIMLYDLVASVSVSCFGKNLLIDPMLEEENYQDGSLMITCMASRYEVTQLTI
        ++  ALE A+ILE FP+T +DVF  VL++        I+ ASLALADAGI + DLVA+ S       +++D   EE+NY +  + +  M  + ++T L +
Subjt:  MLHKALEGAIILETFPKTTVDVFALVLESGGSDLPVVISCASLALADAGIMLYDLVASVSVSCFGKNLLIDPMLEEENYQDGSLMITCMASRYEVTQLTI

Query:  TGEWSTAKINEGMQLCLDASCKLVEIMRTCLKE
         G  +  +  E ++L +  +  + +  R  LKE
Subjt:  TGEWSTAKINEGMQLCLDASCKLVEIMRTCLKE

Arabidopsis top hitse value%identityAlignment
AT3G46210.1 Ribosomal protein S5 domain 2-like superfamily protein3.9e-1231.29Show/hide
Query:  RPDGRAFHQCRPAFFRTGAVNAASGSAYAEFGNTKVIVSVFGPRESKKAMMYSDIGRLNCSVSYTTFSTPVRGQ-GSENKEFSSMLHKALEGAIILETFP
        R DGR  +Q RP       ++   GSA    G+TKV+ +V+GP+   K    ++         +     P  GQ G   KE+  +L + ++   +L   P
Subjt:  RPDGRAFHQCRPAFFRTGAVNAASGSAYAEFGNTKVIVSVFGPRESKKAMMYSDIGRLNCSVSYTTFSTPVRGQ-GSENKEFSSMLHKALEGAIILETFP

Query:  KTTVDVFALVLESGGSDLPVVISCASLALADAGIMLYDLVASVSVSCFGKN--LLIDPMLEEE
         TT  V   V+   GS LP  I+ A  AL DAGI +  L  ++   C  +N  L++DP   EE
Subjt:  KTTVDVFALVLESGGSDLPVVISCASLALADAGIMLYDLVASVSVSCFGKN--LLIDPMLEEE

AT3G46210.2 Ribosomal protein S5 domain 2-like superfamily protein3.9e-1231.29Show/hide
Query:  RPDGRAFHQCRPAFFRTGAVNAASGSAYAEFGNTKVIVSVFGPRESKKAMMYSDIGRLNCSVSYTTFSTPVRGQ-GSENKEFSSMLHKALEGAIILETFP
        R DGR  +Q RP       ++   GSA    G+TKV+ +V+GP+   K    ++         +     P  GQ G   KE+  +L + ++   +L   P
Subjt:  RPDGRAFHQCRPAFFRTGAVNAASGSAYAEFGNTKVIVSVFGPRESKKAMMYSDIGRLNCSVSYTTFSTPVRGQ-GSENKEFSSMLHKALEGAIILETFP

Query:  KTTVDVFALVLESGGSDLPVVISCASLALADAGIMLYDLVASVSVSCFGKN--LLIDPMLEEE
         TT  V   V+   GS LP  I+ A  AL DAGI +  L  ++   C  +N  L++DP   EE
Subjt:  KTTVDVFALVLESGGSDLPVVISCASLALADAGIMLYDLVASVSVSCFGKN--LLIDPMLEEE

AT3G61620.1 3'-5'-exoribonuclease family protein2.3e-2030.04Show/hide
Query:  VRPDGRAFHQCRPAFFRTGAVNAASGSAYAEFGNTKVIVSVFGPRE--SKKAMMYSDIGRLNCSVSYTTFSTPVRGQ---GSENKEFSSMLHKALEGAII
        +R DGR F++ R      G V+ A GSA  E GNTKVI +V+GPRE  +K     +D   + C  S   FST  R +      + E S ++ + +E  I+
Subjt:  VRPDGRAFHQCRPAFFRTGAVNAASGSAYAEFGNTKVIVSVFGPRE--SKKAMMYSDIGRLNCSVSYTTFSTPVRGQ---GSENKEFSSMLHKALEGAII

Query:  LETFPKTTVDVFALVLESGGSDLPVVISCASLALADAGIMLYDLVASVSVSCFGKNLLIDPMLEEENYQDGSLMITCMASRYEVTQLTITGEWSTAKINE
         E  P + +D+F  VL++ G      I+ A+LALADAGI + DL  S S        L+D    E++     + +  +    +V+ L +  +        
Subjt:  LETFPKTTVDVFALVLESGGSDLPVVISCASLALADAGIMLYDLVASVSVSCFGKNLLIDPMLEEENYQDGSLMITCMASRYEVTQLTITGEWSTAKINE

Query:  GMQLCLDASCKLVEIMRTCLKES
           L  +    + E +R  L+E+
Subjt:  GMQLCLDASCKLVEIMRTCLKES

AT3G61620.2 3'-5'-exoribonuclease family protein2.3e-2030.04Show/hide
Query:  VRPDGRAFHQCRPAFFRTGAVNAASGSAYAEFGNTKVIVSVFGPRE--SKKAMMYSDIGRLNCSVSYTTFSTPVRGQ---GSENKEFSSMLHKALEGAII
        +R DGR F++ R      G V+ A GSA  E GNTKVI +V+GPRE  +K     +D   + C  S   FST  R +      + E S ++ + +E  I+
Subjt:  VRPDGRAFHQCRPAFFRTGAVNAASGSAYAEFGNTKVIVSVFGPRE--SKKAMMYSDIGRLNCSVSYTTFSTPVRGQ---GSENKEFSSMLHKALEGAII

Query:  LETFPKTTVDVFALVLESGGSDLPVVISCASLALADAGIMLYDLVASVSVSCFGKNLLIDPMLEEENYQDGSLMITCMASRYEVTQLTITGEWSTAKINE
         E  P + +D+F  VL++ G      I+ A+LALADAGI + DL  S S        L+D    E++     + +  +    +V+ L +  +        
Subjt:  LETFPKTTVDVFALVLESGGSDLPVVISCASLALADAGIMLYDLVASVSVSCFGKNLLIDPMLEEENYQDGSLMITCMASRYEVTQLTITGEWSTAKINE

Query:  GMQLCLDASCKLVEIMRTCLKES
           L  +    + E +R  L+E+
Subjt:  GMQLCLDASCKLVEIMRTCLKES

AT4G27490.1 3'-5'-exoribonuclease family protein2.3e-10573.54Show/hide
Query:  MAKKATPATTTYSPSPTTLKTRPPIFRTDDVDWVRPDGRAFHQCRPAFFRTGAVNAASGSAYAEFGNTKVIVSVFGPRESKKAMMYSDIGRLNCSVSYTT
        MA K   AT TYSP     ++R PIF+  D+DW RPDGR FHQCRPA  +TGAV++ASGSAYAEFGNTKVIVSVFGPRESKKAM+YSD+GRLNC+VSYT 
Subjt:  MAKKATPATTTYSPSPTTLKTRPPIFRTDDVDWVRPDGRAFHQCRPAFFRTGAVNAASGSAYAEFGNTKVIVSVFGPRESKKAMMYSDIGRLNCSVSYTT

Query:  FSTPVRGQGSENKEFSSMLHKALEGAIILETFPKTTVDVFALVLESGGSDLPVVISCASLALADAGIMLYDLVASVSVSCFGKNLLIDPMLEEENYQDGS
        F++P  GQG+++KE+SSMLHKALEG I++ETFPKTTVDVFALVLESGGSDL V+ISCASLALADAGIM+YDL+ +VSVSC GK+L+IDP+ EEE  +DGS
Subjt:  FSTPVRGQGSENKEFSSMLHKALEGAIILETFPKTTVDVFALVLESGGSDLPVVISCASLALADAGIMLYDLVASVSVSCFGKNLLIDPMLEEENYQDGS

Query:  LMITCMASRYEVTQLTITGEWSTAKINEGMQLCLDASCKLVEIMRTCLKESATISEE
         M+TCM SRYE+TQLTITGEW+T  INE MQLCLDAS KL EIMR CLK+SA+ S+E
Subjt:  LMITCMASRYEVTQLTITGEWSTAKINEGMQLCLDASCKLVEIMRTCLKESATISEE


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCCAAAAAAGCGACACCAGCTACGACTACGTATTCTCCGTCTCCAACTACCCTCAAAACCAGACCACCCATCTTCAGAACCGACGACGTCGACTGGGTTCGCCCAGA
TGGCCGAGCCTTCCACCAGTGCCGTCCTGCTTTTTTTAGGACTGGTGCTGTAAATGCTGCTTCAGGATCTGCTTATGCAGAGTTCGGTAATACCAAGGTCATCGTTTCTG
TATTTGGCCCTAGAGAAAGTAAGAAGGCAATGATGTACAGTGATATTGGCCGGCTGAATTGTAGTGTCAGTTATACAACATTTTCCACTCCAGTTCGAGGACAGGGATCA
GAAAACAAGGAGTTCTCCTCGATGCTACATAAAGCTTTGGAAGGAGCAATAATATTGGAGACATTTCCCAAGACAACCGTGGATGTATTTGCCTTGGTGTTGGAGTCTGG
AGGCAGTGATCTTCCTGTTGTAATATCATGTGCCAGTCTTGCTCTTGCCGATGCTGGGATTATGCTTTATGATCTTGTTGCCTCAGTTTCTGTGAGCTGCTTTGGTAAGA
ATCTTCTTATTGATCCAATGTTGGAAGAGGAAAACTACCAAGATGGAAGTCTGATGATTACTTGTATGGCATCTCGTTACGAAGTCACTCAACTCACTATAACAGGCGAA
TGGTCAACTGCGAAAATTAACGAGGGTATGCAGCTTTGCCTGGATGCTTCATGTAAGCTTGTGGAGATCATGCGGACGTGCTTAAAGGAATCTGCCACCATTTCAGAGGA
ATAG
mRNA sequenceShow/hide mRNA sequence
ATTAACCTCAAATATATAAGAAGAGCTTCGCTAAAAGTGCACCGGCCGGCCTCTCCCGCTTCCAAGGTTCAGTTTTTCAATCTTGGGTTACTCGGATTGTTTCCAATCTC
TTTGAAGAAACCATTCTTTGGAGTTTAAAGCCACCATCGTGGGGGGTTTTCTGTTCATTTGTCCCGACGGCGGAAGGAAATTTTGTGGGTGAGCTTCCAAAGTAATCGAC
CCATTGACATTCCGAAATGGCCAAAAAAGCGACACCAGCTACGACTACGTATTCTCCGTCTCCAACTACCCTCAAAACCAGACCACCCATCTTCAGAACCGACGACGTCG
ACTGGGTTCGCCCAGATGGCCGAGCCTTCCACCAGTGCCGTCCTGCTTTTTTTAGGACTGGTGCTGTAAATGCTGCTTCAGGATCTGCTTATGCAGAGTTCGGTAATACC
AAGGTCATCGTTTCTGTATTTGGCCCTAGAGAAAGTAAGAAGGCAATGATGTACAGTGATATTGGCCGGCTGAATTGTAGTGTCAGTTATACAACATTTTCCACTCCAGT
TCGAGGACAGGGATCAGAAAACAAGGAGTTCTCCTCGATGCTACATAAAGCTTTGGAAGGAGCAATAATATTGGAGACATTTCCCAAGACAACCGTGGATGTATTTGCCT
TGGTGTTGGAGTCTGGAGGCAGTGATCTTCCTGTTGTAATATCATGTGCCAGTCTTGCTCTTGCCGATGCTGGGATTATGCTTTATGATCTTGTTGCCTCAGTTTCTGTG
AGCTGCTTTGGTAAGAATCTTCTTATTGATCCAATGTTGGAAGAGGAAAACTACCAAGATGGAAGTCTGATGATTACTTGTATGGCATCTCGTTACGAAGTCACTCAACT
CACTATAACAGGCGAATGGTCAACTGCGAAAATTAACGAGGGTATGCAGCTTTGCCTGGATGCTTCATGTAAGCTTGTGGAGATCATGCGGACGTGCTTAAAGGAATCTG
CCACCATTTCAGAGGAATAGAAAACTGTGACTTGATTTCTTTTAGTTTGGTACACAATTCCCCAATTTTGAGAAATATGTAAAAGTTTTGGGAAATGGTTCAGATGGATT
GGATTGCTCAAGTTAAAGAAAAAAAAAAAAGTTTTTCATTTGCATTATAACTTGGTTGATTGCCATAGCAGAAGCAAAGTTGGGTTGAAGTTGAAGCTATTTATTATTTG
GATATTCAATGTTGTTGGAGTCAAGTTTGAGCCCTCAGTCCAAGTCCCACTTGTTGGATATATTGTCTTTATATATAAGTTGTGTGGCCTTTGGTCTTCGCTCATCTGCC
ACGGC
Protein sequenceShow/hide protein sequence
MAKKATPATTTYSPSPTTLKTRPPIFRTDDVDWVRPDGRAFHQCRPAFFRTGAVNAASGSAYAEFGNTKVIVSVFGPRESKKAMMYSDIGRLNCSVSYTTFSTPVRGQGS
ENKEFSSMLHKALEGAIILETFPKTTVDVFALVLESGGSDLPVVISCASLALADAGIMLYDLVASVSVSCFGKNLLIDPMLEEENYQDGSLMITCMASRYEVTQLTITGE
WSTAKINEGMQLCLDASCKLVEIMRTCLKESATISEE