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Sed0016979 (gene) of Chayote v1 genome

Gene IDSed0016979
OrganismSechium edule (Chayote v1)
DescriptionYcf3-interacting protein 1
Genome locationLG14:24876481..24877005
RNA-Seq ExpressionSed0016979
SyntenySed0016979
Gene Ontology termsGO:0048564 - photosystem I assembly (biological process)
GO:0080183 - response to photooxidative stress (biological process)
GO:0009535 - chloroplast thylakoid membrane (cellular component)
InterPro domainsIPR040340 - Chloroplast enhancing stress tolerance protein


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG7034827.1 hypothetical protein SDJN02_04559, partial [Cucurbita argyrosperma subsp. argyrosperma]4.3e-2146.3Show/hide
Query:  GKARRQFRCGRLCLWIPKLPGF----GKEKGNRKEEVE--VEGGGCISISISISSRVSLQTFECSSWASSGVV---------------------------
        GKARR FRCG LCL +P L G     GK K  RKEEVE   EGGGCISISIS  SRVSL+ FEC SWASSG+V                           
Subjt:  GKARRQFRCGRLCLWIPKLPGF----GKEKGNRKEEVE--VEGGGCISISISISSRVSLQTFECSSWASSGVV---------------------------

Query:  ----------------------HVPVWTKPKLVEDSGSPSAYTINPCLRKARREFNAILKAH
                              H+PVWTK KL E+SG+ S   I P LR+AR EFNA+L+AH
Subjt:  ----------------------HVPVWTKPKLVEDSGSPSAYTINPCLRKARREFNAILKAH

XP_022925963.1 uncharacterized protein LOC111433224 [Cucurbita moschata]4.3e-2146.3Show/hide
Query:  GKARRQFRCGRLCLWIPKLPGF----GKEKGNRKEEVE--VEGGGCISISISISSRVSLQTFECSSWASSGVV---------------------------
        GKARR FRCG LCL +P L G     GK K  RKEEVE   EGGGCISISIS  SRVSL+ FEC SWASSG+V                           
Subjt:  GKARRQFRCGRLCLWIPKLPGF----GKEKGNRKEEVE--VEGGGCISISISISSRVSLQTFECSSWASSGVV---------------------------

Query:  ----------------------HVPVWTKPKLVEDSGSPSAYTINPCLRKARREFNAILKAH
                              H+PVWTK KL E+SG+ S   I P LR+AR EFNA+L+AH
Subjt:  ----------------------HVPVWTKPKLVEDSGSPSAYTINPCLRKARREFNAILKAH

XP_022978627.1 uncharacterized protein LOC111478548 [Cucurbita maxima]4.3e-2146.3Show/hide
Query:  GKARRQFRCGRLCLWIPKLPGF----GKEKGNRKEEVE--VEGGGCISISISISSRVSLQTFECSSWASSGVV---------------------------
        GKARR FRCG LCL +P L G     GK K  RKEEVE   EGGGCISISIS  SRVSL+ FEC SWASSG+V                           
Subjt:  GKARRQFRCGRLCLWIPKLPGF----GKEKGNRKEEVE--VEGGGCISISISISSRVSLQTFECSSWASSGVV---------------------------

Query:  ----------------------HVPVWTKPKLVEDSGSPSAYTINPCLRKARREFNAILKAH
                              H+PVWTK KL E+SG+ S   I P LR+AR EFNA+L+AH
Subjt:  ----------------------HVPVWTKPKLVEDSGSPSAYTINPCLRKARREFNAILKAH

XP_023543164.1 uncharacterized protein LOC111803119 [Cucurbita pepo subsp. pepo]4.3e-2146.3Show/hide
Query:  GKARRQFRCGRLCLWIPKLPGF----GKEKGNRKEEVE--VEGGGCISISISISSRVSLQTFECSSWASSGVV---------------------------
        GKARR FRCG LCL +P L G     GK K  RKEEVE   EGGGCISISIS  SRVSL+ FEC SWASSG+V                           
Subjt:  GKARRQFRCGRLCLWIPKLPGF----GKEKGNRKEEVE--VEGGGCISISISISSRVSLQTFECSSWASSGVV---------------------------

Query:  ----------------------HVPVWTKPKLVEDSGSPSAYTINPCLRKARREFNAILKAH
                              H+PVWTK KL E+SG+ S   I P LR+AR EFNA+L+AH
Subjt:  ----------------------HVPVWTKPKLVEDSGSPSAYTINPCLRKARREFNAILKAH

XP_038877520.1 uncharacterized protein LOC120069777 [Benincasa hispida]7.3e-2144.81Show/hide
Query:  GKARRQFRCGRLCLWIPKLPGF------GKEKGNRKEEVEVEGGGCISISISISSRVSLQTFECSSWASSGVV---------------------------
        GKA+R FRCG LCL +P L G       GKEKG  + + E E G C  ISISIS RVSL+ FEC SWASSG+V                           
Subjt:  GKARRQFRCGRLCLWIPKLPGF------GKEKGNRKEEVEVEGGGCISISISISSRVSLQTFECSSWASSGVV---------------------------

Query:  -------------HVPVWTKPKLVEDSGSPSAYTINPCLRKARREFNAILKAHT
                     H+P+WTKP L E+SG+ S   I P LRKAR EFNA+L+AHT
Subjt:  -------------HVPVWTKPKLVEDSGSPSAYTINPCLRKARREFNAILKAHT

TrEMBL top hitse value%identityAlignment
A0A0A0KME4 Uncharacterized protein1.3e-1845.39Show/hide
Query:  GKARRQFRCGRLCLWIPKL---PGFGKEKGNRKEEVEVEGGGCISISISISSRVSLQTFECSSWASSG-VVH-----------VP---------------
        GK RR   CG LCL +P L    G G+ KG  ++  E E G C  ISISIS RVSL+ FEC SWASSG VVH           +P               
Subjt:  GKARRQFRCGRLCLWIPKL---PGFGKEKGNRKEEVEVEGGGCISISISISSRVSLQTFECSSWASSG-VVH-----------VP---------------

Query:  -----------VWTKPKLVEDSGSPSAYTINPCLRKARREFNAILKAHTHTL
                   VW KPKL E+SG+ S   I P LRKAR+EFNA+L+AHTH L
Subjt:  -----------VWTKPKLVEDSGSPSAYTINPCLRKARREFNAILKAHTHTL

A0A1S3AZD3 uncharacterized protein LOC1034842328.2e-1845.33Show/hide
Query:  GKARRQFRCGRLCLWIPKL---PGFGKEKGNRKEEVEVEGGGCISISISISSRVSLQTFECSSWASSG-VVH-----------VP---------------
        GK RR F+CG LCL +P L    G G+ KG  +++ E E G C  ISISIS RVSLQ FEC SWASSG VVH           +P               
Subjt:  GKARRQFRCGRLCLWIPKL---PGFGKEKGNRKEEVEVEGGGCISISISISSRVSLQTFECSSWASSG-VVH-----------VP---------------

Query:  ------------VWTKPKLVEDSGSPSAYTINPCLRKARREFNAILKAHT
                    VW KPKL ++SG+ S   I P LRKAR+EFNA+L+AHT
Subjt:  ------------VWTKPKLVEDSGSPSAYTINPCLRKARREFNAILKAHT

A0A5A7UFW0 Ycf3-interacting protein 12.6e-1644.97Show/hide
Query:  GKARRQFRCGRLCLWIPKL---PGFGKEKGNRKEEVEVEGGGCISISISISSRVSLQTFECSSWASSG-VVH-----------VP---------------
        GK RR F+CG LCL +P L    G G+ KG  +++ E E G C  ISISIS RVSL+ FEC SWASSG VVH           +P               
Subjt:  GKARRQFRCGRLCLWIPKL---PGFGKEKGNRKEEVEVEGGGCISISISISSRVSLQTFECSSWASSG-VVH-----------VP---------------

Query:  -----------VWTKPKLVEDSGSPSAYTINPCLRKARREFNAILKAHT
                   V  KPKL E+SG+ S   I P LRKAR+EFNA+L+AHT
Subjt:  -----------VWTKPKLVEDSGSPSAYTINPCLRKARREFNAILKAHT

A0A6J1EGQ7 uncharacterized protein LOC1114332242.1e-2146.3Show/hide
Query:  GKARRQFRCGRLCLWIPKLPGF----GKEKGNRKEEVE--VEGGGCISISISISSRVSLQTFECSSWASSGVV---------------------------
        GKARR FRCG LCL +P L G     GK K  RKEEVE   EGGGCISISIS  SRVSL+ FEC SWASSG+V                           
Subjt:  GKARRQFRCGRLCLWIPKLPGF----GKEKGNRKEEVE--VEGGGCISISISISSRVSLQTFECSSWASSGVV---------------------------

Query:  ----------------------HVPVWTKPKLVEDSGSPSAYTINPCLRKARREFNAILKAH
                              H+PVWTK KL E+SG+ S   I P LR+AR EFNA+L+AH
Subjt:  ----------------------HVPVWTKPKLVEDSGSPSAYTINPCLRKARREFNAILKAH

A0A6J1ILL2 uncharacterized protein LOC1114785482.1e-2146.3Show/hide
Query:  GKARRQFRCGRLCLWIPKLPGF----GKEKGNRKEEVE--VEGGGCISISISISSRVSLQTFECSSWASSGVV---------------------------
        GKARR FRCG LCL +P L G     GK K  RKEEVE   EGGGCISISIS  SRVSL+ FEC SWASSG+V                           
Subjt:  GKARRQFRCGRLCLWIPKLPGF----GKEKGNRKEEVE--VEGGGCISISISISSRVSLQTFECSSWASSGVV---------------------------

Query:  ----------------------HVPVWTKPKLVEDSGSPSAYTINPCLRKARREFNAILKAH
                              H+PVWTK KL E+SG+ S   I P LR+AR EFNA+L+AH
Subjt:  ----------------------HVPVWTKPKLVEDSGSPSAYTINPCLRKARREFNAILKAH

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTAGACACGGGGCTTCCTTCATCTCTTGGCACCACTAACAGAAGCTACGGTTTGGATGCAGCAAAAGAGAAAGTAGGAAAGGCGCGGCGGATGGAGAGTCCTTTGGA
AACCGAAAATGGGGGAAAAGCAAGGAGGCAATTCAGATGTGGGAGACTATGCTTGTGGATACCGAAGCTGCCAGGTTTTGGGAAAGAGAAAGGGAATAGAAAGGAAGAGG
TAGAGGTAGAGGGAGGTGGGTGTATATCCATTTCGATATCCATATCGAGTAGAGTTTCCTTACAAACATTCGAATGCAGTTCGTGGGCTTCATCGGGCGTGGTTCATGTT
CCTGTATGGACGAAACCAAAATTGGTGGAGGACTCAGGCTCCCCATCTGCATACACCATTAACCCATGCTTGCGCAAAGCCAGACGAGAATTCAATGCGATTTTGAAAGC
CCACACCCACACTCTATGA
mRNA sequenceShow/hide mRNA sequence
ATGGTAGACACGGGGCTTCCTTCATCTCTTGGCACCACTAACAGAAGCTACGGTTTGGATGCAGCAAAAGAGAAAGTAGGAAAGGCGCGGCGGATGGAGAGTCCTTTGGA
AACCGAAAATGGGGGAAAAGCAAGGAGGCAATTCAGATGTGGGAGACTATGCTTGTGGATACCGAAGCTGCCAGGTTTTGGGAAAGAGAAAGGGAATAGAAAGGAAGAGG
TAGAGGTAGAGGGAGGTGGGTGTATATCCATTTCGATATCCATATCGAGTAGAGTTTCCTTACAAACATTCGAATGCAGTTCGTGGGCTTCATCGGGCGTGGTTCATGTT
CCTGTATGGACGAAACCAAAATTGGTGGAGGACTCAGGCTCCCCATCTGCATACACCATTAACCCATGCTTGCGCAAAGCCAGACGAGAATTCAATGCGATTTTGAAAGC
CCACACCCACACTCTATGA
Protein sequenceShow/hide protein sequence
MVDTGLPSSLGTTNRSYGLDAAKEKVGKARRMESPLETENGGKARRQFRCGRLCLWIPKLPGFGKEKGNRKEEVEVEGGGCISISISISSRVSLQTFECSSWASSGVVHV
PVWTKPKLVEDSGSPSAYTINPCLRKARREFNAILKAHTHTL