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Sed0016981 (gene) of Chayote v1 genome

Gene IDSed0016981
OrganismSechium edule (Chayote v1)
Descriptiontranscription factor TGA2-like
Genome locationLG03:17274041..17274807
RNA-Seq ExpressionSed0016981
SyntenySed0016981
Gene Ontology termsGO:0006355 - regulation of transcription, DNA-templated (biological process)
GO:0000976 - transcription regulatory region sequence-specific DNA binding (molecular function)
GO:0003700 - DNA-binding transcription factor activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6585266.1 hypothetical protein SDJN03_17999, partial [Cucurbita argyrosperma subsp. sororia]4.6e-1775.81Show/hide
Query:  MAFDVEYARWFEDQNHQMNELRSTVNSHARDPELLIVIDGILVHYDELFRLKCSPIKMIMLH
        MAFDVEYARW ED N QMNELRS VNSHA DPEL IV+DGILVHYDELFRLK +  K  + H
Subjt:  MAFDVEYARWFEDQNHQMNELRSTVNSHARDPELLIVIDGILVHYDELFRLKCSPIKMIMLH

XP_004146772.1 transcription factor TGA2 [Cucumis sativus]1.0e-1674.19Show/hide
Query:  MAFDVEYARWFEDQNHQMNELRSTVNSHARDPELLIVIDGILVHYDELFRLKCSPIKMIMLH
        MAFDVEYARW ED N Q+NELRS VNSHA DPEL IV+DGILVHYDELFRLK +  K  + H
Subjt:  MAFDVEYARWFEDQNHQMNELRSTVNSHARDPELLIVIDGILVHYDELFRLKCSPIKMIMLH

XP_008445387.1 PREDICTED: transcription factor TGA2-like [Cucumis melo]1.0e-1674.19Show/hide
Query:  MAFDVEYARWFEDQNHQMNELRSTVNSHARDPELLIVIDGILVHYDELFRLKCSPIKMIMLH
        MAFDVEYARW ED N Q+NELRS VNSHA DPEL IV+DGILVHYDELFRLK +  K  + H
Subjt:  MAFDVEYARWFEDQNHQMNELRSTVNSHARDPELLIVIDGILVHYDELFRLKCSPIKMIMLH

XP_022951077.1 transcription factor TGA2-like [Cucurbita moschata]4.6e-1775.81Show/hide
Query:  MAFDVEYARWFEDQNHQMNELRSTVNSHARDPELLIVIDGILVHYDELFRLKCSPIKMIMLH
        MAFDVEYARW ED N QMNELRS VNSHA DPEL IV+DGILVHYDELFRLK +  K  + H
Subjt:  MAFDVEYARWFEDQNHQMNELRSTVNSHARDPELLIVIDGILVHYDELFRLKCSPIKMIMLH

XP_038884523.1 transcription factor TGA6-like [Benincasa hispida]3.0e-1670.97Show/hide
Query:  MAFDVEYARWFEDQNHQMNELRSTVNSHARDPELLIVIDGILVHYDELFRLKCSPIKMIMLH
        MAFDVEYARW ED N Q+NELRS VNSHA DPEL I++DGILVHYDELF+LK +  K  + H
Subjt:  MAFDVEYARWFEDQNHQMNELRSTVNSHARDPELLIVIDGILVHYDELFRLKCSPIKMIMLH

TrEMBL top hitse value%identityAlignment
A0A0A0KH92 Uncharacterized protein5.0e-1774.19Show/hide
Query:  MAFDVEYARWFEDQNHQMNELRSTVNSHARDPELLIVIDGILVHYDELFRLKCSPIKMIMLH
        MAFDVEYARW ED N Q+NELRS VNSHA DPEL IV+DGILVHYDELFRLK +  K  + H
Subjt:  MAFDVEYARWFEDQNHQMNELRSTVNSHARDPELLIVIDGILVHYDELFRLKCSPIKMIMLH

A0A1S3BCK9 transcription factor TGA2-like5.0e-1774.19Show/hide
Query:  MAFDVEYARWFEDQNHQMNELRSTVNSHARDPELLIVIDGILVHYDELFRLKCSPIKMIMLH
        MAFDVEYARW ED N Q+NELRS VNSHA DPEL IV+DGILVHYDELFRLK +  K  + H
Subjt:  MAFDVEYARWFEDQNHQMNELRSTVNSHARDPELLIVIDGILVHYDELFRLKCSPIKMIMLH

A0A5A7VC04 Transcription factor TGA2-like5.0e-1774.19Show/hide
Query:  MAFDVEYARWFEDQNHQMNELRSTVNSHARDPELLIVIDGILVHYDELFRLKCSPIKMIMLH
        MAFDVEYARW ED N Q+NELRS VNSHA DPEL IV+DGILVHYDELFRLK +  K  + H
Subjt:  MAFDVEYARWFEDQNHQMNELRSTVNSHARDPELLIVIDGILVHYDELFRLKCSPIKMIMLH

A0A6J1GGN4 transcription factor TGA2-like2.2e-1775.81Show/hide
Query:  MAFDVEYARWFEDQNHQMNELRSTVNSHARDPELLIVIDGILVHYDELFRLKCSPIKMIMLH
        MAFDVEYARW ED N QMNELRS VNSHA DPEL IV+DGILVHYDELFRLK +  K  + H
Subjt:  MAFDVEYARWFEDQNHQMNELRSTVNSHARDPELLIVIDGILVHYDELFRLKCSPIKMIMLH

A0A6J1KMW4 transcription factor TGA2-like2.2e-1775.81Show/hide
Query:  MAFDVEYARWFEDQNHQMNELRSTVNSHARDPELLIVIDGILVHYDELFRLKCSPIKMIMLH
        MAFDVEYARW ED N QMNELRS VNSHA DPEL IV+DGILVHYDELFRLK +  K  + H
Subjt:  MAFDVEYARWFEDQNHQMNELRSTVNSHARDPELLIVIDGILVHYDELFRLKCSPIKMIMLH

SwissProt top hitse value%identityAlignment
P43273 Transcription factor TGA21.7e-1453.23Show/hide
Query:  MAFDVEYARWFEDQNHQMNELRSTVNSHARDPELLIVIDGILVHYDELFRLKCSPIKMIMLH
        +AFD E++RW E++N QMNELRS +N+HA D EL I++DG++ HY+ELFR+K +  K  + H
Subjt:  MAFDVEYARWFEDQNHQMNELRSTVNSHARDPELLIVIDGILVHYDELFRLKCSPIKMIMLH

Q39140 Transcription factor TGA61.3e-1453.23Show/hide
Query:  MAFDVEYARWFEDQNHQMNELRSTVNSHARDPELLIVIDGILVHYDELFRLKCSPIKMIMLH
        +AFD E++RW E++N QMNELRS +N+HA D EL I++DG++ HY+ELFR+K +  K  + H
Subjt:  MAFDVEYARWFEDQNHQMNELRSTVNSHARDPELLIVIDGILVHYDELFRLKCSPIKMIMLH

Q39163 Transcription factor TGA53.8e-1454.84Show/hide
Query:  MAFDVEYARWFEDQNHQMNELRSTVNSHARDPELLIVIDGILVHYDELFRLKCSPIKMIMLH
        MAFDVEY RW ED+N QM EL S ++SHA D EL I++DG++ HY+EL+R+K +  K  + H
Subjt:  MAFDVEYARWFEDQNHQMNELRSTVNSHARDPELLIVIDGILVHYDELFRLKCSPIKMIMLH

Q6IVC3 Transcription factor TGA2.24.5e-1556.45Show/hide
Query:  MAFDVEYARWFEDQNHQMNELRSTVNSHARDPELLIVIDGILVHYDELFRLKCSPIKMIMLH
        M FD+EYARW E+QN Q+NELR+ VN+HA D +L +++DGI+ HYDE+FRLK    K  + H
Subjt:  MAFDVEYARWFEDQNHQMNELRSTVNSHARDPELLIVIDGILVHYDELFRLKCSPIKMIMLH

Q7X993 Transcription factor TGA2.11.9e-1350Show/hide
Query:  MAFDVEYARWFEDQNHQMNELRSTVNSHARDPELLIVIDGILVHYDELFRLKCSPIKMIMLH
        + FD+EY RW E+QN Q+NELR+ VN+HA D +L +++DGI+ HYDE+F++K    K  + H
Subjt:  MAFDVEYARWFEDQNHQMNELRSTVNSHARDPELLIVIDGILVHYDELFRLKCSPIKMIMLH

Arabidopsis top hitse value%identityAlignment
AT3G12250.1 TGACG motif-binding factor 69.3e-1653.23Show/hide
Query:  MAFDVEYARWFEDQNHQMNELRSTVNSHARDPELLIVIDGILVHYDELFRLKCSPIKMIMLH
        +AFD E++RW E++N QMNELRS +N+HA D EL I++DG++ HY+ELFR+K +  K  + H
Subjt:  MAFDVEYARWFEDQNHQMNELRSTVNSHARDPELLIVIDGILVHYDELFRLKCSPIKMIMLH

AT3G12250.2 TGACG motif-binding factor 69.3e-1653.23Show/hide
Query:  MAFDVEYARWFEDQNHQMNELRSTVNSHARDPELLIVIDGILVHYDELFRLKCSPIKMIMLH
        +AFD E++RW E++N QMNELRS +N+HA D EL I++DG++ HY+ELFR+K +  K  + H
Subjt:  MAFDVEYARWFEDQNHQMNELRSTVNSHARDPELLIVIDGILVHYDELFRLKCSPIKMIMLH

AT3G12250.3 TGACG motif-binding factor 69.3e-1653.23Show/hide
Query:  MAFDVEYARWFEDQNHQMNELRSTVNSHARDPELLIVIDGILVHYDELFRLKCSPIKMIMLH
        +AFD E++RW E++N QMNELRS +N+HA D EL I++DG++ HY+ELFR+K +  K  + H
Subjt:  MAFDVEYARWFEDQNHQMNELRSTVNSHARDPELLIVIDGILVHYDELFRLKCSPIKMIMLH

AT3G12250.4 TGACG motif-binding factor 69.3e-1653.23Show/hide
Query:  MAFDVEYARWFEDQNHQMNELRSTVNSHARDPELLIVIDGILVHYDELFRLKCSPIKMIMLH
        +AFD E++RW E++N QMNELRS +N+HA D EL I++DG++ HY+ELFR+K +  K  + H
Subjt:  MAFDVEYARWFEDQNHQMNELRSTVNSHARDPELLIVIDGILVHYDELFRLKCSPIKMIMLH

AT3G12250.5 TGACG motif-binding factor 69.3e-1653.23Show/hide
Query:  MAFDVEYARWFEDQNHQMNELRSTVNSHARDPELLIVIDGILVHYDELFRLKCSPIKMIMLH
        +AFD E++RW E++N QMNELRS +N+HA D EL I++DG++ HY+ELFR+K +  K  + H
Subjt:  MAFDVEYARWFEDQNHQMNELRSTVNSHARDPELLIVIDGILVHYDELFRLKCSPIKMIMLH


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCATTTGATGTAGAATATGCTCGGTGGTTTGAAGATCAAAACCATCAAATGAATGAATTGAGATCGACTGTTAATTCTCATGCAAGAGACCCGGAACTGCTTATTGT
CATTGATGGCATCTTGGTTCATTATGATGAGCTTTTCAGGCTCAAGTGTAGTCCAATAAAAATGATAATGTTACATACAAATTCTTGCAAATCAACTGGAGCCTCCAACA
AAGCAGTAGTTGGTGGGAATAACAAGCTTGTAACAATCATCACAACAGGCAGAAGATGCATTATCACAAGGAATGGAAGCCCTGCAACAGTTCCTGGCAGAGATGTTGTC
AACTGCCGAGTGGACCTCTCGGCTCCTTTGGTTTGTCAGGGAATGTTGCAAACTACATGGGTAAACTCGAGATGCTCGAGGGTTTTATACGCCAAGTAA
mRNA sequenceShow/hide mRNA sequence
ATGGCATTTGATGTAGAATATGCTCGGTGGTTTGAAGATCAAAACCATCAAATGAATGAATTGAGATCGACTGTTAATTCTCATGCAAGAGACCCGGAACTGCTTATTGT
CATTGATGGCATCTTGGTTCATTATGATGAGCTTTTCAGGCTCAAGTGTAGTCCAATAAAAATGATAATGTTACATACAAATTCTTGCAAATCAACTGGAGCCTCCAACA
AAGCAGTAGTTGGTGGGAATAACAAGCTTGTAACAATCATCACAACAGGCAGAAGATGCATTATCACAAGGAATGGAAGCCCTGCAACAGTTCCTGGCAGAGATGTTGTC
AACTGCCGAGTGGACCTCTCGGCTCCTTTGGTTTGTCAGGGAATGTTGCAAACTACATGGGTAAACTCGAGATGCTCGAGGGTTTTATACGCCAAGTAA
Protein sequenceShow/hide protein sequence
MAFDVEYARWFEDQNHQMNELRSTVNSHARDPELLIVIDGILVHYDELFRLKCSPIKMIMLHTNSCKSTGASNKAVVGGNNKLVTIITTGRRCIITRNGSPATVPGRDVV
NCRVDLSAPLVCQGMLQTTWVNSRCSRVLYAK