; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Sed0016999 (gene) of Chayote v1 genome

Gene IDSed0016999
OrganismSechium edule (Chayote v1)
Descriptiontranslation initiation factor IF-1, chloroplastic-like
Genome locationLG04:41980891..41982561
RNA-Seq ExpressionSed0016999
SyntenySed0016999
Gene Ontology termsGO:0006413 - translational initiation (biological process)
GO:0005829 - cytosol (cellular component)
GO:0009507 - chloroplast (cellular component)
GO:0016021 - integral component of membrane (cellular component)
GO:0003743 - translation initiation factor activity (molecular function)
GO:0043022 - ribosome binding (molecular function)
InterPro domainsIPR004368 - Translation initiation factor IF-1
IPR006196 - RNA-binding domain, S1, IF1 type
IPR012340 - Nucleic acid-binding, OB-fold
IPR022967 - RNA-binding domain, S1


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0064332.1 translation initiation factor IF-1 [Cucumis melo var. makuwa]2.2e-5984.62Show/hide
Query:  MSSTNLLQFPLLQPYFRPPATLLFPARKSNLPIVSIPFPSSRFLHGPSHGPASFALKAKPPKSDISEQKLSHEGSVIESLPNGMFRVRLDNEDLILGYIS
        MSSTNLLQFPLLQ +FRPP+TLLFP  KS+L +VSI FP+S+FLH PSH P  FAL AK PK+D SEQKLSHEGSV+ESLPNGMFRVRLDNEDLILGYIS
Subjt:  MSSTNLLQFPLLQPYFRPPATLLFPARKSNLPIVSIPFPSSRFLHGPSHGPASFALKAKPPKSDISEQKLSHEGSVIESLPNGMFRVRLDNEDLILGYIS

Query:  GKIRKNFVRILPGDRVRVEVSRYDSTKGRIVYRLRNSTKDSSS
        GKIRKNFVRILPGDRVRVEVSRYDSTKGRIVYRLR+S KDSSS
Subjt:  GKIRKNFVRILPGDRVRVEVSRYDSTKGRIVYRLRNSTKDSSS

XP_011654076.1 uncharacterized protein LOC101206284 [Cucumis sativus]7.8e-5782.52Show/hide
Query:  MSSTNLLQFPLLQPYFRPPATLLFPARKSNLPIVSIPFPSSRFLHGPSHGPASFALKAKPPKSDISEQKLSHEGSVIESLPNGMFRVRLDNEDLILGYIS
        MSSTNLLQFPLLQ +FRPP+TLLFPA KS+L + SI FP+S+FLH PSH   +F L AK PK+D SEQKLSHEGSV+ESLPNGMFRVRLDN+DLILGYIS
Subjt:  MSSTNLLQFPLLQPYFRPPATLLFPARKSNLPIVSIPFPSSRFLHGPSHGPASFALKAKPPKSDISEQKLSHEGSVIESLPNGMFRVRLDNEDLILGYIS

Query:  GKIRKNFVRILPGDRVRVEVSRYDSTKGRIVYRLRNSTKDSSS
        GKIRKNFVRILPGDRVRVEVSRYDSTKGRIVYR+R STKDSSS
Subjt:  GKIRKNFVRILPGDRVRVEVSRYDSTKGRIVYRLRNSTKDSSS

XP_022940969.1 translation initiation factor IF-1, chloroplastic-like [Cucurbita moschata]6.6e-5683.22Show/hide
Query:  MSSTNLLQFPLLQPYFRPPATLLFPARKSNLPIVSIPFPSSRFLHGPSHGPASFALKAKPPKSDISEQKLSHEGSVIESLPNGMFRVRLDNEDLILGYIS
        MSSTNLLQFPLLQ   RPP+T LFPA KS++ +VSIPFPSS+FLH PSHGP SF   AK PKS+ SEQK SHEGSVIESLPNGMFRV+LDNEDLILGYIS
Subjt:  MSSTNLLQFPLLQPYFRPPATLLFPARKSNLPIVSIPFPSSRFLHGPSHGPASFALKAKPPKSDISEQKLSHEGSVIESLPNGMFRVRLDNEDLILGYIS

Query:  GKIRKNFVRILPGDRVRVEVSRYDSTKGRIVYRLRNSTKDSSS
        GKIRKNFVRILPGDRVRVEVSRYDSTKGRIVYR R STKD SS
Subjt:  GKIRKNFVRILPGDRVRVEVSRYDSTKGRIVYRLRNSTKDSSS

XP_022981301.1 translation initiation factor IF-1, chloroplastic-like [Cucurbita maxima]2.3e-5684.62Show/hide
Query:  MSSTNLLQFPLLQPYFRPPATLLFPARKSNLPIVSIPFPSSRFLHGPSHGPASFALKAKPPKSDISEQKLSHEGSVIESLPNGMFRVRLDNEDLILGYIS
        MSSTNLLQFPLLQ   RPP T LFP  KS+L +VSIPFPSS+FLH PSHGPASFA  AK PKS+ SEQK SHEGSVIESLPNGMFRV+LDNEDLILGYIS
Subjt:  MSSTNLLQFPLLQPYFRPPATLLFPARKSNLPIVSIPFPSSRFLHGPSHGPASFALKAKPPKSDISEQKLSHEGSVIESLPNGMFRVRLDNEDLILGYIS

Query:  GKIRKNFVRILPGDRVRVEVSRYDSTKGRIVYRLRNSTKDSSS
        GKIRKNFVRILPGDRVRVEVSRYDSTKGRIVYR R STKD SS
Subjt:  GKIRKNFVRILPGDRVRVEVSRYDSTKGRIVYRLRNSTKDSSS

XP_038899010.1 translation initiation factor IF-1, chloroplastic [Benincasa hispida]1.2e-5782.52Show/hide
Query:  MSSTNLLQFPLLQPYFRPPATLLFPARKSNLPIVSIPFPSSRFLHGPSHGPASFALKAKPPKSDISEQKLSHEGSVIESLPNGMFRVRLDNEDLILGYIS
        MSST LLQFPLLQ +FRPP+TL FPA KS+L +VSI FP+++FLH PSH  A F L AK PK+D SEQK SHEGSV+ESLPNGMFRVRLDNEDLILGYIS
Subjt:  MSSTNLLQFPLLQPYFRPPATLLFPARKSNLPIVSIPFPSSRFLHGPSHGPASFALKAKPPKSDISEQKLSHEGSVIESLPNGMFRVRLDNEDLILGYIS

Query:  GKIRKNFVRILPGDRVRVEVSRYDSTKGRIVYRLRNSTKDSSS
        GKIRKNFVRILPGDRVRVEVSRYDSTKGRIVYRLR+STKDSSS
Subjt:  GKIRKNFVRILPGDRVRVEVSRYDSTKGRIVYRLRNSTKDSSS

TrEMBL top hitse value%identityAlignment
A0A0A0L4Q7 S1-like domain-containing protein3.8e-5782.52Show/hide
Query:  MSSTNLLQFPLLQPYFRPPATLLFPARKSNLPIVSIPFPSSRFLHGPSHGPASFALKAKPPKSDISEQKLSHEGSVIESLPNGMFRVRLDNEDLILGYIS
        MSSTNLLQFPLLQ +FRPP+TLLFPA KS+L + SI FP+S+FLH PSH   +F L AK PK+D SEQKLSHEGSV+ESLPNGMFRVRLDN+DLILGYIS
Subjt:  MSSTNLLQFPLLQPYFRPPATLLFPARKSNLPIVSIPFPSSRFLHGPSHGPASFALKAKPPKSDISEQKLSHEGSVIESLPNGMFRVRLDNEDLILGYIS

Query:  GKIRKNFVRILPGDRVRVEVSRYDSTKGRIVYRLRNSTKDSSS
        GKIRKNFVRILPGDRVRVEVSRYDSTKGRIVYR+R STKDSSS
Subjt:  GKIRKNFVRILPGDRVRVEVSRYDSTKGRIVYRLRNSTKDSSS

A0A5A7V7J3 Translation initiation factor IF-11.1e-5984.62Show/hide
Query:  MSSTNLLQFPLLQPYFRPPATLLFPARKSNLPIVSIPFPSSRFLHGPSHGPASFALKAKPPKSDISEQKLSHEGSVIESLPNGMFRVRLDNEDLILGYIS
        MSSTNLLQFPLLQ +FRPP+TLLFP  KS+L +VSI FP+S+FLH PSH P  FAL AK PK+D SEQKLSHEGSV+ESLPNGMFRVRLDNEDLILGYIS
Subjt:  MSSTNLLQFPLLQPYFRPPATLLFPARKSNLPIVSIPFPSSRFLHGPSHGPASFALKAKPPKSDISEQKLSHEGSVIESLPNGMFRVRLDNEDLILGYIS

Query:  GKIRKNFVRILPGDRVRVEVSRYDSTKGRIVYRLRNSTKDSSS
        GKIRKNFVRILPGDRVRVEVSRYDSTKGRIVYRLR+S KDSSS
Subjt:  GKIRKNFVRILPGDRVRVEVSRYDSTKGRIVYRLRNSTKDSSS

A0A6J1FLU6 translation initiation factor IF-1, chloroplastic-like3.2e-5683.22Show/hide
Query:  MSSTNLLQFPLLQPYFRPPATLLFPARKSNLPIVSIPFPSSRFLHGPSHGPASFALKAKPPKSDISEQKLSHEGSVIESLPNGMFRVRLDNEDLILGYIS
        MSSTNLLQFPLLQ   RPP+T LFPA KS++ +VSIPFPSS+FLH PSHGP SF   AK PKS+ SEQK SHEGSVIESLPNGMFRV+LDNEDLILGYIS
Subjt:  MSSTNLLQFPLLQPYFRPPATLLFPARKSNLPIVSIPFPSSRFLHGPSHGPASFALKAKPPKSDISEQKLSHEGSVIESLPNGMFRVRLDNEDLILGYIS

Query:  GKIRKNFVRILPGDRVRVEVSRYDSTKGRIVYRLRNSTKDSSS
        GKIRKNFVRILPGDRVRVEVSRYDSTKGRIVYR R STKD SS
Subjt:  GKIRKNFVRILPGDRVRVEVSRYDSTKGRIVYRLRNSTKDSSS

A0A6J1IP00 uncharacterized protein LOC1114769472.3e-5480.43Show/hide
Query:  MSSTNLLQFPLLQPYFRPPATLLFPARKSNLPIVSIPFPSSRFLHGPSHGPASFALKAKPPKSDISEQKLSHEGSVIESLPNGMFRVRLDNEDLILGYIS
        MSSTNLL+FPLL  + RPP+TL FPA KS+L +VSI FP+S+FL  PSHGPA FAL AKPPKSD +EQK S+EGS++ESLPNGMFRVRLDNEDLILGYI 
Subjt:  MSSTNLLQFPLLQPYFRPPATLLFPARKSNLPIVSIPFPSSRFLHGPSHGPASFALKAKPPKSDISEQKLSHEGSVIESLPNGMFRVRLDNEDLILGYIS

Query:  GKIRKNFVRILPGDRVRVEVSRYDSTKGRIVYRLRNST
        GKIRKNFVRILPGDRVRVEVSRYDSTKGRIVYR R+ST
Subjt:  GKIRKNFVRILPGDRVRVEVSRYDSTKGRIVYRLRNST

A0A6J1IW62 translation initiation factor IF-1, chloroplastic-like1.1e-5684.62Show/hide
Query:  MSSTNLLQFPLLQPYFRPPATLLFPARKSNLPIVSIPFPSSRFLHGPSHGPASFALKAKPPKSDISEQKLSHEGSVIESLPNGMFRVRLDNEDLILGYIS
        MSSTNLLQFPLLQ   RPP T LFP  KS+L +VSIPFPSS+FLH PSHGPASFA  AK PKS+ SEQK SHEGSVIESLPNGMFRV+LDNEDLILGYIS
Subjt:  MSSTNLLQFPLLQPYFRPPATLLFPARKSNLPIVSIPFPSSRFLHGPSHGPASFALKAKPPKSDISEQKLSHEGSVIESLPNGMFRVRLDNEDLILGYIS

Query:  GKIRKNFVRILPGDRVRVEVSRYDSTKGRIVYRLRNSTKDSSS
        GKIRKNFVRILPGDRVRVEVSRYDSTKGRIVYR R STKD SS
Subjt:  GKIRKNFVRILPGDRVRVEVSRYDSTKGRIVYRLRNSTKDSSS

SwissProt top hitse value%identityAlignment
A0A370 Translation initiation factor IF-1, chloroplastic1.2e-2877.92Show/hide
Query:  ISEQKLSHEGSVIESLPNGMFRVRLDNEDLILGYISGKIRKNFVRILPGDRVRVEVSRYDSTKGRIVYRLRNSTKDS
        + EQK +HEG + ESLPNGMFRVRLDNEDLILGY+SGKIR++F+RILPGDRV++EVSRYDST+GRI+YRLRN  KDS
Subjt:  ISEQKLSHEGSVIESLPNGMFRVRLDNEDLILGYISGKIRKNFVRILPGDRVRVEVSRYDSTKGRIVYRLRNSTKDS

A6MMF7 Translation initiation factor IF-1, chloroplastic1.2e-2876.92Show/hide
Query:  ISEQKLSHEGSVIESLPNGMFRVRLDNEDLILGYISGKIRKNFVRILPGDRVRVEVSRYDSTKGRIVYRLRNSTKDSS
        + EQKL HEG + ESLPNGMFRVRLDNEDLILGY+SG+IR++F+RILPGDRV++EVSRYDST+GRI+YRLRN  KDS+
Subjt:  ISEQKLSHEGSVIESLPNGMFRVRLDNEDLILGYISGKIRKNFVRILPGDRVRVEVSRYDSTKGRIVYRLRNSTKDSS

A6MMP2 Translation initiation factor IF-1, chloroplastic1.4e-2979.49Show/hide
Query:  ISEQKLSHEGSVIESLPNGMFRVRLDNEDLILGYISGKIRKNFVRILPGDRVRVEVSRYDSTKGRIVYRLRNSTKDSS
        + EQKL HEG +IESLPNGMFRVRLDNEDLILGY+SG+IR++F+RILPGDRV++EVSRYDSTKGRI+YRLRN  KDS+
Subjt:  ISEQKLSHEGSVIESLPNGMFRVRLDNEDLILGYISGKIRKNFVRILPGDRVRVEVSRYDSTKGRIVYRLRNSTKDSS

Q94KR7 Translation initiation factor IF-1, chloroplastic2.6e-3160.58Show/hide
Query:  LQFPLLQPYFRPPATLLFPARKSNLPIVSIPFPSS-RFLHGPSHGPASFALK----AKPPKSDISEQKLSHEGSVIESLPNGMFRVRLDNEDLILGYISG
        L  P+L P +    T   P+     P+   PF  +  FL  P   PA+ AL     AKP KS   EQK  HEG ++ESLPNGMFRVRLDNEDLILGYISG
Subjt:  LQFPLLQPYFRPPATLLFPARKSNLPIVSIPFPSS-RFLHGPSHGPASFALK----AKPPKSDISEQKLSHEGSVIESLPNGMFRVRLDNEDLILGYISG

Query:  KIRKNFVRILPGDRVRVEVSRYDSTKGRIVYRLRNST
        KIRKN+VRILPGDRV+VEV+RYDS+KGRIVYRLR+ST
Subjt:  KIRKNFVRILPGDRVRVEVSRYDSTKGRIVYRLRNST

Q95GN5 Translation initiation factor IF-1, chloroplastic3.2e-2978.21Show/hide
Query:  ISEQKLSHEGSVIESLPNGMFRVRLDNEDLILGYISGKIRKNFVRILPGDRVRVEVSRYDSTKGRIVYRLRNSTKDSS
        + EQKL HEG +IESLPNGMFRVRLDNEDLILGY+SG+IR++F+RILPGDRV++EVSRYDST+GRI+YRLRN  KDS+
Subjt:  ISEQKLSHEGSVIESLPNGMFRVRLDNEDLILGYISGKIRKNFVRILPGDRVRVEVSRYDSTKGRIVYRLRNSTKDSS

Arabidopsis top hitse value%identityAlignment
AT4G11175.1 Nucleic acid-binding, OB-fold-like protein4.6e-2364.63Show/hide
Query:  ALKAKPPKSDISE--QKLSHEGSVIESLPNGMFRVRLDNEDLILGYISGKIRKNFVRILPGDRVRVEVSRYDSTKGRIVYRL
        A ++KP K  + E   K   EG V ESLPNGMFRV L+N D ILGYI GKIRKNF+RILPGD+V+VE+S YDSTKGRI++R+
Subjt:  ALKAKPPKSDISE--QKLSHEGSVIESLPNGMFRVRLDNEDLILGYISGKIRKNFVRILPGDRVRVEVSRYDSTKGRIVYRL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCGAGCACAAATCTCCTCCAATTTCCTCTCCTTCAACCCTACTTCCGGCCACCGGCGACTCTCCTTTTTCCGGCCAGAAAATCGAATCTCCCCATCGTCTCAATCCC
TTTTCCGAGCTCTCGATTCCTCCACGGCCCTTCCCATGGTCCGGCCAGCTTCGCTTTGAAAGCGAAGCCTCCCAAAAGCGACATCTCGGAGCAGAAATTGAGCCATGAAG
GCTCCGTCATCGAGTCTCTTCCCAATGGAATGTTCAGAGTTCGATTGGATAATGAAGACCTCATTCTTGGCTACATATCGGGTAAGATTCGGAAGAATTTTGTGCGTATT
TTGCCTGGTGATAGGGTTAGGGTTGAAGTTAGCCGTTATGATTCTACCAAAGGCCGTATTGTTTATAGACTTCGAAACAGTACTAAGGATTCTTCTTCCTGA
mRNA sequenceShow/hide mRNA sequence
CTTCAGCCAAAATCCCAGAAAGCTGAAGGTGGAGCGCAAATGTCGAGCACAAATCTCCTCCAATTTCCTCTCCTTCAACCCTACTTCCGGCCACCGGCGACTCTCCTTTT
TCCGGCCAGAAAATCGAATCTCCCCATCGTCTCAATCCCTTTTCCGAGCTCTCGATTCCTCCACGGCCCTTCCCATGGTCCGGCCAGCTTCGCTTTGAAAGCGAAGCCTC
CCAAAAGCGACATCTCGGAGCAGAAATTGAGCCATGAAGGCTCCGTCATCGAGTCTCTTCCCAATGGAATGTTCAGAGTTCGATTGGATAATGAAGACCTCATTCTTGGC
TACATATCGGGTAAGATTCGGAAGAATTTTGTGCGTATTTTGCCTGGTGATAGGGTTAGGGTTGAAGTTAGCCGTTATGATTCTACCAAAGGCCGTATTGTTTATAGACT
TCGAAACAGTACTAAGGATTCTTCTTCCTGAATTATAGTTTTGGTTTTTTGCTCCTTCCTTTCTTCTTTTTATTTCAATGTGTTGATTTTGTGAAATAATTTATCCGTTT
TTTTTTTCTTTTAAATGCATAATGACAAACCTTTATTTTACTTTAGCTCTTTGAACCTTTAGGAGTTTCACAGCTTGTTGATCTATGTCTTGTCTTGTAATTGTTTTGAT
CTAAAGAAAGAGGTGAATTGGGCTTTTTCAGCTTGTTCTTGCTAGATGATTTTGGTGTTCCTTCTCTACTATAAGGAAATGTGGAACAAAAGGATTTGCCTGTATGCAGA
AATTAAATAGCTCGTGTGTAGCTAGAATGGACTTAAATACTCTTAACGTCGTTCCTTACAAAATATTGGGTTTCTTTCATGAATCATAACAACAAATGAGTGAAGCATCA
TGGAGTAGCCTAGTGGTTAAAAGGACTTTGGGGGAACTAAGAGGATTTTAATCCATGGTGGCCACCTAGCTCGTAAAAGGGCTTTGGAGTAGCCTAGGGAGGCAATATCT
CCCGTGATAATAGTCGAGGTGCGCGCAAATTGACCCAATTACAAATATGAGAAAAAAAAAAGGAGTGAATTGAAGGGGCTTGGTTGAACTTATGAATTTGTGATCTTCTT
CTATATATAAGCCTAATTTTCCATTCTATTCAGACTTCGGAGTTTGAGTTTTGCTGCTTGGGATGTGACGAATCACATATATAGATGCATAGTAAACACCATGGGGTGGC
TCAATTGGTCAAAGAGGGTCTTAGGGTGCATAAGGTGATGGGTTCAATCCCTATGGTAGTCACCTACTTAGGAATTAATTTCTTACGAGTTTTCTTGGCATCCAAATGTT
GAAGGGTCAGGCGGTATGCCTCGTAACAATAGTCAAGGTGCGCGCAAGCTAGCCCGGACAATCATGGATATAAAAAAAAGCATGTATAGATGCATATATGTCTAGTTATC
TCATCTCATGGAATGGTTGTATGATTAGAACTTCGTTATGCAGTTTAAGTTAGTTAACTAGTTTCGATGTGGGGTTCTGCTAATATGATGCCTCATTGGCCTGATGCTTG
CTAACATCAGTAGTTTTGCTGAATTTGCTTTCAAAGGTTCGTTGTAGAAGAACTAGTCTCAGGCTTGGTTTTGTTGCTATGCCTGTTTTAGGGGGGAAAGCAACCCTAAA
CCCTTCTCAAAAACACTAGGC
Protein sequenceShow/hide protein sequence
MSSTNLLQFPLLQPYFRPPATLLFPARKSNLPIVSIPFPSSRFLHGPSHGPASFALKAKPPKSDISEQKLSHEGSVIESLPNGMFRVRLDNEDLILGYISGKIRKNFVRI
LPGDRVRVEVSRYDSTKGRIVYRLRNSTKDSSS