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Sed0017001 (gene) of Chayote v1 genome

Gene IDSed0017001
OrganismSechium edule (Chayote v1)
DescriptionAlba domain-containing protein
Genome locationLG11:974424..977470
RNA-Seq ExpressionSed0017001
SyntenySed0017001
Gene Ontology termsGO:0005634 - nucleus (cellular component)
GO:0003723 - RNA binding (molecular function)
InterPro domainsIPR002775 - DNA/RNA-binding protein Alba-like
IPR014560 - Uncharacterised conserved protein UCP030333, DNA/RNA-binding Alba-related
IPR036882 - Alba-like domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6599408.1 hypothetical protein SDJN03_09186, partial [Cucurbita argyrosperma subsp. sororia]1.4e-5287.79Show/hide
Query:  MEVIVEGVNTMNLASDSFKKNRIQVSNTKKPLFFYVNLAKRYMQQHEEVELSALGMAIATVVTVAEILKNNGFAVEKKIGTSTVDIKDDSRGRPVQKAKI
        ME IVEGV++MNL SDS+KKNRIQVSNTKKPLFFYVNLAKRYMQQH+ VELSALGMAIATVVTVAEILKNNG AVEKKI TSTVDIKDDSRGRPVQKAKI
Subjt:  MEVIVEGVNTMNLASDSFKKNRIQVSNTKKPLFFYVNLAKRYMQQHEEVELSALGMAIATVVTVAEILKNNGFAVEKKIGTSTVDIKDDSRGRPVQKAKI

Query:  EIVLGKTESFDELMVAAAEERREIGDVEEQS
        EI+LGKTE+FDELM AAAEER E GD +EQS
Subjt:  EIVLGKTESFDELMVAAAEERREIGDVEEQS

XP_004139317.1 uncharacterized protein At2g34160 [Cucumis sativus]7.4e-5488.55Show/hide
Query:  MEVIVEGVNTMNLASDSFKKNRIQVSNTKKPLFFYVNLAKRYMQQHEEVELSALGMAIATVVTVAEILKNNGFAVEKKIGTSTVDIKDDSRGRPVQKAKI
        ME IVEGVN++NL+SDSFKKNRIQVSNTKKPLFFYVNLAKRYMQQH+EVELSALGMAIATVVTVAEILKNNG A+EKKI TSTVDIKDDSRGRPVQKAKI
Subjt:  MEVIVEGVNTMNLASDSFKKNRIQVSNTKKPLFFYVNLAKRYMQQHEEVELSALGMAIATVVTVAEILKNNGFAVEKKIGTSTVDIKDDSRGRPVQKAKI

Query:  EIVLGKTESFDELMVAAAEERREIGDVEEQS
        EI+LGKTE+FDELM AAAEER EIG+ +EQS
Subjt:  EIVLGKTESFDELMVAAAEERREIGDVEEQS

XP_008457716.1 PREDICTED: uncharacterized protein At2g34160-like [Cucumis melo]1.1e-5490.08Show/hide
Query:  MEVIVEGVNTMNLASDSFKKNRIQVSNTKKPLFFYVNLAKRYMQQHEEVELSALGMAIATVVTVAEILKNNGFAVEKKIGTSTVDIKDDSRGRPVQKAKI
        ME IVEGVN++NL+SDSFKKNRIQVSNTKKPLFFYVNLAKRYMQQH+EVELSALGMAIATVVTVAEILKNNG AVEKKI TSTVDIKDDSRGRPVQKAKI
Subjt:  MEVIVEGVNTMNLASDSFKKNRIQVSNTKKPLFFYVNLAKRYMQQHEEVELSALGMAIATVVTVAEILKNNGFAVEKKIGTSTVDIKDDSRGRPVQKAKI

Query:  EIVLGKTESFDELMVAAAEERREIGDVEEQS
        EI+LGKTE+FDELM AAAEER EIGD +EQS
Subjt:  EIVLGKTESFDELMVAAAEERREIGDVEEQS

XP_022946216.1 uncharacterized protein At2g34160-like [Cucurbita moschata]1.4e-5287.79Show/hide
Query:  MEVIVEGVNTMNLASDSFKKNRIQVSNTKKPLFFYVNLAKRYMQQHEEVELSALGMAIATVVTVAEILKNNGFAVEKKIGTSTVDIKDDSRGRPVQKAKI
        ME IVEGV++MNL SDS+KKNRIQVSNTKKPLFFYVNLAKRYMQQH+ VELSALGMAIATVVTVAEILKNNG AVEKKI TSTVDIKDDSRGRPVQKAKI
Subjt:  MEVIVEGVNTMNLASDSFKKNRIQVSNTKKPLFFYVNLAKRYMQQHEEVELSALGMAIATVVTVAEILKNNGFAVEKKIGTSTVDIKDDSRGRPVQKAKI

Query:  EIVLGKTESFDELMVAAAEERREIGDVEEQS
        EI+LGKTE+FDELM AAAEER E GD +EQS
Subjt:  EIVLGKTESFDELMVAAAEERREIGDVEEQS

XP_038890892.1 uncharacterized protein At2g34160-like [Benincasa hispida]1.4e-5286.57Show/hide
Query:  MEVIVEGVNTMNLAS---DSFKKNRIQVSNTKKPLFFYVNLAKRYMQQHEEVELSALGMAIATVVTVAEILKNNGFAVEKKIGTSTVDIKDDSRGRPVQK
        ME IVEGVN+MNL+S   DS+KKNRIQVSNTKKPLFFYVNLAKRYMQQH+EVELSALGMAIATVVTVAEILKNNG A+EKKI TSTVDIKDDSRGRPVQK
Subjt:  MEVIVEGVNTMNLAS---DSFKKNRIQVSNTKKPLFFYVNLAKRYMQQHEEVELSALGMAIATVVTVAEILKNNGFAVEKKIGTSTVDIKDDSRGRPVQK

Query:  AKIEIVLGKTESFDELMVAAAEERREIGDVEEQS
        AKIEI+LGKT++FDELM AAAEER EIGD +EQS
Subjt:  AKIEIVLGKTESFDELMVAAAEERREIGDVEEQS

TrEMBL top hitse value%identityAlignment
A0A1S3C651 uncharacterized protein At2g34160-like5.5e-5590.08Show/hide
Query:  MEVIVEGVNTMNLASDSFKKNRIQVSNTKKPLFFYVNLAKRYMQQHEEVELSALGMAIATVVTVAEILKNNGFAVEKKIGTSTVDIKDDSRGRPVQKAKI
        ME IVEGVN++NL+SDSFKKNRIQVSNTKKPLFFYVNLAKRYMQQH+EVELSALGMAIATVVTVAEILKNNG AVEKKI TSTVDIKDDSRGRPVQKAKI
Subjt:  MEVIVEGVNTMNLASDSFKKNRIQVSNTKKPLFFYVNLAKRYMQQHEEVELSALGMAIATVVTVAEILKNNGFAVEKKIGTSTVDIKDDSRGRPVQKAKI

Query:  EIVLGKTESFDELMVAAAEERREIGDVEEQS
        EI+LGKTE+FDELM AAAEER EIGD +EQS
Subjt:  EIVLGKTESFDELMVAAAEERREIGDVEEQS

A0A5D3BH52 DNA/RNA-binding protein Alba-like protein5.5e-5590.08Show/hide
Query:  MEVIVEGVNTMNLASDSFKKNRIQVSNTKKPLFFYVNLAKRYMQQHEEVELSALGMAIATVVTVAEILKNNGFAVEKKIGTSTVDIKDDSRGRPVQKAKI
        ME IVEGVN++NL+SDSFKKNRIQVSNTKKPLFFYVNLAKRYMQQH+EVELSALGMAIATVVTVAEILKNNG AVEKKI TSTVDIKDDSRGRPVQKAKI
Subjt:  MEVIVEGVNTMNLASDSFKKNRIQVSNTKKPLFFYVNLAKRYMQQHEEVELSALGMAIATVVTVAEILKNNGFAVEKKIGTSTVDIKDDSRGRPVQKAKI

Query:  EIVLGKTESFDELMVAAAEERREIGDVEEQS
        EI+LGKTE+FDELM AAAEER EIGD +EQS
Subjt:  EIVLGKTESFDELMVAAAEERREIGDVEEQS

A0A6J1CNW3 uncharacterized protein At2g34160-like5.7e-5285.5Show/hide
Query:  MEVIVEGVNTMNLASDSFKKNRIQVSNTKKPLFFYVNLAKRYMQQHEEVELSALGMAIATVVTVAEILKNNGFAVEKKIGTSTVDIKDDSRGRPVQKAKI
        ME IVEGVN++NL  D +KKNRIQVSNTKKPLFFYVNLAKRYMQQH EVELSALGMAIATVVTVAEILKNNG  VEKKI TSTVDIKDDSRGRPVQKAKI
Subjt:  MEVIVEGVNTMNLASDSFKKNRIQVSNTKKPLFFYVNLAKRYMQQHEEVELSALGMAIATVVTVAEILKNNGFAVEKKIGTSTVDIKDDSRGRPVQKAKI

Query:  EIVLGKTESFDELMVAAAEERREIGDVEEQS
        EI+LGKTE+FDELM AAAEER + GD +EQS
Subjt:  EIVLGKTESFDELMVAAAEERREIGDVEEQS

A0A6J1G312 uncharacterized protein At2g34160-like6.8e-5387.79Show/hide
Query:  MEVIVEGVNTMNLASDSFKKNRIQVSNTKKPLFFYVNLAKRYMQQHEEVELSALGMAIATVVTVAEILKNNGFAVEKKIGTSTVDIKDDSRGRPVQKAKI
        ME IVEGV++MNL SDS+KKNRIQVSNTKKPLFFYVNLAKRYMQQH+ VELSALGMAIATVVTVAEILKNNG AVEKKI TSTVDIKDDSRGRPVQKAKI
Subjt:  MEVIVEGVNTMNLASDSFKKNRIQVSNTKKPLFFYVNLAKRYMQQHEEVELSALGMAIATVVTVAEILKNNGFAVEKKIGTSTVDIKDDSRGRPVQKAKI

Query:  EIVLGKTESFDELMVAAAEERREIGDVEEQS
        EI+LGKTE+FDELM AAAEER E GD +EQS
Subjt:  EIVLGKTESFDELMVAAAEERREIGDVEEQS

A0A6J1KJN4 uncharacterized protein At2g34160-like1.2e-5287.79Show/hide
Query:  MEVIVEGVNTMNLASDSFKKNRIQVSNTKKPLFFYVNLAKRYMQQHEEVELSALGMAIATVVTVAEILKNNGFAVEKKIGTSTVDIKDDSRGRPVQKAKI
        ME IVEGV++MNL SDS+KKNRIQVSNTKKPLFFYVNLAKRYMQQH+ VELSALGMAIATVVTVAEILKNNG AVEKKI TSTVDIKDDSRGRPVQKAKI
Subjt:  MEVIVEGVNTMNLASDSFKKNRIQVSNTKKPLFFYVNLAKRYMQQHEEVELSALGMAIATVVTVAEILKNNGFAVEKKIGTSTVDIKDDSRGRPVQKAKI

Query:  EIVLGKTESFDELMVAAAEERREIGDVEEQS
        EI LGKTE+FDELM AAAEER E GD +EQS
Subjt:  EIVLGKTESFDELMVAAAEERREIGDVEEQS

SwissProt top hitse value%identityAlignment
O22969 Uncharacterized protein At2g341604.8e-4882.93Show/hide
Query:  MEVIVEGVNTMNLASDSFKKNRIQVSNTKKPLFFYVNLAKRYMQQHEEVELSALGMAIATVVTVAEILKNNGFAVEKKIGTSTVDIKDDSRGRPVQKAKI
        ME I +GVN MNLA+DS KKNRIQVSNTKKPLFFYVNLAKRYMQQ+ +VELSALGMAIATVVTV EILKNNGFAVEKKI TSTVDIKDD+RGRPVQKAKI
Subjt:  MEVIVEGVNTMNLASDSFKKNRIQVSNTKKPLFFYVNLAKRYMQQHEEVELSALGMAIATVVTVAEILKNNGFAVEKKIGTSTVDIKDDSRGRPVQKAKI

Query:  EIVLGKTESFDELMVAAAEERRE
        EI L K+E FDELM AA EE+ +
Subjt:  EIVLGKTESFDELMVAAAEERRE

Arabidopsis top hitse value%identityAlignment
AT1G29250.1 Alba DNA/RNA-binding protein2.4e-5081.68Show/hide
Query:  MEVIVEGVNTMNLASDSFKKNRIQVSNTKKPLFFYVNLAKRYMQQHEEVELSALGMAIATVVTVAEILKNNGFAVEKKIGTSTVDIKDDSRGRPVQKAKI
        ME I EGVN MNLA D+ KKNRIQVSNTKKPLFFYVNLAKRYMQQ+ +VELSALGMAIATVVTVAEILKNNGFAVEKKI TSTVDIKDDSRGRPVQKAKI
Subjt:  MEVIVEGVNTMNLASDSFKKNRIQVSNTKKPLFFYVNLAKRYMQQHEEVELSALGMAIATVVTVAEILKNNGFAVEKKIGTSTVDIKDDSRGRPVQKAKI

Query:  EIVLGKTESFDELMVAAAEERREIGDVEEQS
        EI L K+E FDELM AAA E +E  + +EQ+
Subjt:  EIVLGKTESFDELMVAAAEERREIGDVEEQS

AT2G34160.1 Alba DNA/RNA-binding protein3.4e-4982.93Show/hide
Query:  MEVIVEGVNTMNLASDSFKKNRIQVSNTKKPLFFYVNLAKRYMQQHEEVELSALGMAIATVVTVAEILKNNGFAVEKKIGTSTVDIKDDSRGRPVQKAKI
        ME I +GVN MNLA+DS KKNRIQVSNTKKPLFFYVNLAKRYMQQ+ +VELSALGMAIATVVTV EILKNNGFAVEKKI TSTVDIKDD+RGRPVQKAKI
Subjt:  MEVIVEGVNTMNLASDSFKKNRIQVSNTKKPLFFYVNLAKRYMQQHEEVELSALGMAIATVVTVAEILKNNGFAVEKKIGTSTVDIKDDSRGRPVQKAKI

Query:  EIVLGKTESFDELMVAAAEERRE
        EI L K+E FDELM AA EE+ +
Subjt:  EIVLGKTESFDELMVAAAEERRE

AT3G04620.1 Alba DNA/RNA-binding protein3.9e-3768.75Show/hide
Query:  VIVEGVNTMNLASDSFKKNRIQVSNTKKPLFFYVNLAKRYMQQHEEVELSALGMAIATVVTVAEILKNNGFAVEKKIGTSTVDIKDDSRGRPVQKAKIEI
        V+     T     ++ KKNRIQVSNTKKPLFFYVNLAKRY+QQH EVELSALGMAI TVVT++EILKNNG A EKK+ TSTV +KD+++G+ VQKAKIEI
Subjt:  VIVEGVNTMNLASDSFKKNRIQVSNTKKPLFFYVNLAKRYMQQHEEVELSALGMAIATVVTVAEILKNNGFAVEKKIGTSTVDIKDDSRGRPVQKAKIEI

Query:  VLGKTESFDELM
        VLGK++ FD L+
Subjt:  VLGKTESFDELM


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAAGTAATCGTCGAAGGTGTGAACACCATGAACTTGGCCTCCGATTCCTTTAAGAAGAATCGGATTCAGGTCTCCAACACCAAGAAGCCTTTGTTCTTCTACGTCAA
TCTCGCTAAGAGGTACATGCAACAGCATGAGGAAGTGGAGCTTTCTGCTCTTGGAATGGCAATTGCTACAGTTGTTACGGTTGCTGAAATTTTGAAAAACAATGGATTTG
CTGTTGAGAAGAAGATTGGAACCTCAACAGTTGATATCAAGGATGATTCAAGAGGACGACCTGTCCAAAAGGCTAAGATTGAGATAGTGCTCGGTAAAACCGAAAGCTTC
GATGAATTGATGGTAGCTGCTGCTGAGGAAAGGAGGGAGATTGGCGACGTAGAGGAACAGAGTTGA
mRNA sequenceShow/hide mRNA sequence
ATATTTTCAAATAATAATAATAATACAGGATCCGGAAAACTAGGGTTTTGAGTTGCAGGATTTTAGGGTTTTTGCGACATTGAAGAAGACGAGATCAATGGAAGTAATCG
TCGAAGGTGTGAACACCATGAACTTGGCCTCCGATTCCTTTAAGAAGAATCGGATTCAGGTCTCCAACACCAAGAAGCCTTTGTTCTTCTACGTCAATCTCGCTAAGAGG
TACATGCAACAGCATGAGGAAGTGGAGCTTTCTGCTCTTGGAATGGCAATTGCTACAGTTGTTACGGTTGCTGAAATTTTGAAAAACAATGGATTTGCTGTTGAGAAGAA
GATTGGAACCTCAACAGTTGATATCAAGGATGATTCAAGAGGACGACCTGTCCAAAAGGCTAAGATTGAGATAGTGCTCGGTAAAACCGAAAGCTTCGATGAATTGATGG
TAGCTGCTGCTGAGGAAAGGAGGGAGATTGGCGACGTAGAGGAACAGAGTTGAAAGATGGATTACTTTTGCTGTATCTTTTCTTTTAGTTGTAATTTTTTATTGTGATGA
ACCAAATTTTGCATCAATTATTTGTAGTTCTGTTGGTACTTGAAGAGTTGAGGCACTTTTTTCTTAGTGAGTTTGTTCATAATTTCATTGTTTGGGATCTTCACATTATT
TGGAGTCTTTTACCATATATAAAACCAGGTTATTTTCTGCTTTCAA
Protein sequenceShow/hide protein sequence
MEVIVEGVNTMNLASDSFKKNRIQVSNTKKPLFFYVNLAKRYMQQHEEVELSALGMAIATVVTVAEILKNNGFAVEKKIGTSTVDIKDDSRGRPVQKAKIEIVLGKTESF
DELMVAAAEERREIGDVEEQS