CuGenDBv2

Gene ID	Sed0017013
Organism	Sechium edule (Chayote v1)
Description	Ribosome maturation factor rimM
Genome location	LG05:1600117..1601359
RNA-Seq Expression	Sed0017013
Synteny	Sed0017013
Gene Ontology terms	GO:0016020 - membrane (cellular component)
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

KAG6606266.1 hypothetical protein SDJN03_03583, partial [Cucurbita argyrosperma subsp. sororia]

4.9e-43

68.71

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Query:  MQRQSLGSPPASKLYGGGHGAGANSDGVPADNQKRNNKHSPSS--------------SSSFRFSFPS----RPEKLVHAIPILTVICFLILYGFSHSPSQ
        MQRQSLGS P SKL+  GHGAGA SD VPAD+QKR NKHSPSS              S SFRFSFP+    R EK VHAIPILT+ICFLILY FSHSPSQ
Subjt:  MQRQSLGSPPASKLYGGGHGAGANSDGVPADNQKRNNKHSPSS--------------SSSFRFSFPS----RPEKLVHAIPILTVICFLILYGFSHSPSQ

Query:  SDLAQIHGSKLPSAHLAEIKADGDELIVP--GNIVAIQSFRNLKEIEKSYTRKSRSPRRFADF
        SDLAQ HG K PS HL EIKA+GDELIVP  GNI+AIQS RNLKEIEKS++ +SR+PR+  DF
Subjt:  SDLAQIHGSKLPSAHLAEIKADGDELIVP--GNIVAIQSFRNLKEIEKSYTRKSRSPRRFADF

XP_004136199.1 uncharacterized protein LOC101212292 isoform X2 [Cucumis sativus]

1.7e-43

71.17

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Query:  MQRQSLGSPPASKLYGGGHGAGANSDGVPADNQKRNNKHSPSSSS--------------SFRFSFPS----RPEKLVHAIPILTVICFLILYGFSHSPSQ
        MQRQSLGS P SKL+  GHGAGA SD  PAD+QKR  KHSPSSSS              SFRFSFPS    R EKLVHAIPILT+ICFLILY FSHSPSQ
Subjt:  MQRQSLGSPPASKLYGGGHGAGANSDGVPADNQKRNNKHSPSSSS--------------SFRFSFPS----RPEKLVHAIPILTVICFLILYGFSHSPSQ

Query:  SDLAQIHGSKLPSAHLAEIKADGDELIVP--GNIVAIQSFRNLKEIEKSYTRKSRSPRRFADF
        SDLAQ HG K PS  L EIKADGDELI+P  GNI+AIQSFRNLKEIEKSY+ KSR PR+ ADF
Subjt:  SDLAQIHGSKLPSAHLAEIKADGDELIVP--GNIVAIQSFRNLKEIEKSYTRKSRSPRRFADF

XP_011652641.1 uncharacterized protein LOC101212292 isoform X1 [Cucumis sativus]

2.4e-45

71.78

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Query:  MQRQSLGSPPASKLYGGGHGAGANSDGVPADNQKRNNKHSPSSSS--------------SFRFSFPS----RPEKLVHAIPILTVICFLILYGFSHSPSQ
        MQRQSLGS P SKL+  GHGAGA SD  PAD+QKR  KHSPSSSS              SFRFSFPS    R EKLVHAIPILT+ICFLILY FSHSPSQ
Subjt:  MQRQSLGSPPASKLYGGGHGAGANSDGVPADNQKRNNKHSPSSSS--------------SFRFSFPS----RPEKLVHAIPILTVICFLILYGFSHSPSQ

Query:  SDLAQIHGSKLPSAHLAEIKADGDELIVP--GNIVAIQSFRNLKEIEKSYTRKSRSPRRFADF
        SDLAQ HG K PS  LAEIKADGDELI+P  GNI+AIQSFRNLKEIEKSY+ KSR PR+ ADF
Subjt:  SDLAQIHGSKLPSAHLAEIKADGDELIVP--GNIVAIQSFRNLKEIEKSYTRKSRSPRRFADF

XP_022995482.1 uncharacterized protein LOC111491006 [Cucurbita maxima]

1.7e-43

69.33

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Query:  MQRQSLGSPPASKLYGGGHGAGANSDGVPADNQKRNNKHSPSS--------------SSSFRFSFPS----RPEKLVHAIPILTVICFLILYGFSHSPSQ
        MQRQSLGS P SKL+  GHGAGA SD VPAD+QKR NKHSPSS              S SFRFSFP+    R EK VHAIPILT+ICFLILY FSHSPSQ
Subjt:  MQRQSLGSPPASKLYGGGHGAGANSDGVPADNQKRNNKHSPSS--------------SSSFRFSFPS----RPEKLVHAIPILTVICFLILYGFSHSPSQ

Query:  SDLAQIHGSKLPSAHLAEIKADGDELIVP--GNIVAIQSFRNLKEIEKSYTRKSRSPRRFADF
        SDLAQ HG K PS HL EIKA+GDELIVP  GNI+AIQS RNLKEIEKS++ +SR+PR+ ADF
Subjt:  SDLAQIHGSKLPSAHLAEIKADGDELIVP--GNIVAIQSFRNLKEIEKSYTRKSRSPRRFADF

XP_023554684.1 uncharacterized protein LOC111811877 isoform X1 [Cucurbita pepo subsp. pepo]

1.7e-43

69.94

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Query:  MQRQSLGSPPASKLYGGGHGAGANSDGVPADNQKRNNKHSPSSSS--------------SFRFSFPS----RPEKLVHAIPILTVICFLILYGFSHSPSQ
        MQRQSLGS P SKL+  GHGAGA SD +PAD+ KR  KHSPSSSS              SFRFSFPS    R E LVHAIPILT+ICFLILY FSH+PSQ
Subjt:  MQRQSLGSPPASKLYGGGHGAGANSDGVPADNQKRNNKHSPSSSS--------------SFRFSFPS----RPEKLVHAIPILTVICFLILYGFSHSPSQ

Query:  SDLAQIHGSKLPSAHLAEIKADGDELIVP--GNIVAIQSFRNLKEIEKSYTRKSRSPRRFADF
        SDLAQ HG K PS  LAEIKADGDELIVP  GNI+AIQSFRNLKEI KS + KSRSPR+ ADF
Subjt:  SDLAQIHGSKLPSAHLAEIKADGDELIVP--GNIVAIQSFRNLKEIEKSYTRKSRSPRRFADF

TrEMBL top hits

e value

%identity

Alignment

A0A0A0LE94 Uncharacterized protein

8.2e-44

71.17

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Query:  MQRQSLGSPPASKLYGGGHGAGANSDGVPADNQKRNNKHSPSSSS--------------SFRFSFPS----RPEKLVHAIPILTVICFLILYGFSHSPSQ
        MQRQSLGS P SKL+  GHGAGA SD  PAD+QKR  KHSPSSSS              SFRFSFPS    R EKLVHAIPILT+ICFLILY FSHSPSQ
Subjt:  MQRQSLGSPPASKLYGGGHGAGANSDGVPADNQKRNNKHSPSSSS--------------SFRFSFPS----RPEKLVHAIPILTVICFLILYGFSHSPSQ

Query:  SDLAQIHGSKLPSAHLAEIKADGDELIVP--GNIVAIQSFRNLKEIEKSYTRKSRSPRRFADF
        SDLAQ HG K PS  L EIKADGDELI+P  GNI+AIQSFRNLKEIEKSY+ KSR PR+ ADF
Subjt:  SDLAQIHGSKLPSAHLAEIKADGDELIVP--GNIVAIQSFRNLKEIEKSYTRKSRSPRRFADF

A0A1S3CQ78 uncharacterized protein LOC103503567 isoform X1

5.3e-43

70.12

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Query:  MQRQSLGSPPASKLYGGGHGAGANSDGVPADNQKRNNKHSPSSSS--------------SFRFSFPS----RPEKLVHAIPILTVICFLILYGFSHSPSQ
        MQRQSLGS P SKL+  GHGAGA SD  PAD+QKR  KHSPSSSS              SFRFSFPS    R EKLVHAIPILT+ICFLILY FSHSPSQ
Subjt:  MQRQSLGSPPASKLYGGGHGAGANSDGVPADNQKRNNKHSPSSSS--------------SFRFSFPS----RPEKLVHAIPILTVICFLILYGFSHSPSQ

Query:  SDLAQIHGSKLPSAHLAEIKA-DGDELIVP--GNIVAIQSFRNLKEIEKSYTRKSRSPRRFADF
        SDLAQ HG K PS  LAEIKA DG ELI+P  GNI+AIQSFRNLKEIEKS++ KSR PR+ ADF
Subjt:  SDLAQIHGSKLPSAHLAEIKA-DGDELIVP--GNIVAIQSFRNLKEIEKSYTRKSRSPRRFADF

A0A6J1HI49 uncharacterized protein LOC111463852 isoform X1

4.1e-43

69.94

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Query:  MQRQSLGSPPASKLYGGGHGAGANSDGVPADNQKRNNKHSPSSSS--------------SFRFSFPS----RPEKLVHAIPILTVICFLILYGFSHSPSQ
        MQRQSLGS P SKL+  GHGAGA SD +P  +QKR  KHSPSSSS              SFRFSFPS    R E LVHAIPILTVICFLILY  SH+PSQ
Subjt:  MQRQSLGSPPASKLYGGGHGAGANSDGVPADNQKRNNKHSPSSSS--------------SFRFSFPS----RPEKLVHAIPILTVICFLILYGFSHSPSQ

Query:  SDLAQIHGSKLPSAHLAEIKADGDELIVP--GNIVAIQSFRNLKEIEKSYTRKSRSPRRFADF
        SDLAQ HG K PS  LAEIKADGDELIVP  GNI+AIQSFRNLKEIEKS + KSRSPR+ ADF
Subjt:  SDLAQIHGSKLPSAHLAEIKADGDELIVP--GNIVAIQSFRNLKEIEKSYTRKSRSPRRFADF

A0A6J1HRQ8 uncharacterized protein LOC111466893 isoform X1

4.1e-43

69.33

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Query:  MQRQSLGSPPASKLYGGGHGAGANSDGVPADNQKRNNKHSPSSSS--------------SFRFSFPS----RPEKLVHAIPILTVICFLILYGFSHSPSQ
        MQRQSLGS P SKL+  GHGAGA SDG+PAD+QKR  KHSPSSSS              SFRFSFPS    R E LVHAIPILT+ICFLILY  SH+PSQ
Subjt:  MQRQSLGSPPASKLYGGGHGAGANSDGVPADNQKRNNKHSPSSSS--------------SFRFSFPS----RPEKLVHAIPILTVICFLILYGFSHSPSQ

Query:  SDLAQIHGSKLPSAHLAEIKADGDELIVP--GNIVAIQSFRNLKEIEKSYTRKSRSPRRFADF
        SDLAQ H  K PS  LAEIKADGDELIVP  GNI+AIQSFR L+EIEKS + KSRSPR+ ADF
Subjt:  SDLAQIHGSKLPSAHLAEIKADGDELIVP--GNIVAIQSFRNLKEIEKSYTRKSRSPRRFADF

A0A6J1JZ13 uncharacterized protein LOC111491006

8.2e-44

69.33

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Query:  MQRQSLGSPPASKLYGGGHGAGANSDGVPADNQKRNNKHSPSS--------------SSSFRFSFPS----RPEKLVHAIPILTVICFLILYGFSHSPSQ
        MQRQSLGS P SKL+  GHGAGA SD VPAD+QKR NKHSPSS              S SFRFSFP+    R EK VHAIPILT+ICFLILY FSHSPSQ
Subjt:  MQRQSLGSPPASKLYGGGHGAGANSDGVPADNQKRNNKHSPSS--------------SSSFRFSFPS----RPEKLVHAIPILTVICFLILYGFSHSPSQ

Query:  SDLAQIHGSKLPSAHLAEIKADGDELIVP--GNIVAIQSFRNLKEIEKSYTRKSRSPRRFADF
        SDLAQ HG K PS HL EIKA+GDELIVP  GNI+AIQS RNLKEIEKS++ +SR+PR+ ADF
Subjt:  SDLAQIHGSKLPSAHLAEIKADGDELIVP--GNIVAIQSFRNLKEIEKSYTRKSRSPRRFADF

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT2G35470.1 unknown protein

2.7e-15

42.44

Show/hide

Query:  MQRQSLGSPPASKLYGGGHGAGANSDGVPADNQKRNNKHSPSSSSSF--------------RFSFPSRP--------EKLVHAIPILTVICFLILYGFSH
        MQR SL S  ASKL+  G   G   D    D+ K  +  SPSSSSS               R S    P        EKLVH IPILT+ICF+ILY  S+
Subjt:  MQRQSLGSPPASKLYGGGHGAGANSDGVPADNQKRNNKHSPSSSSSF--------------RFSFPSRP--------EKLVHAIPILTVICFLILYGFSH

Query:  SPSQSDLAQIHGSKLPSAHLAEIKADGDEL--IVPGNIVAIQ-SFRNLKEIE----KSYTRKSRSPRRFADF
        +PSQSDLAQ +G   PS HL     +GDE+   +  + ++I+ S RNL+E E    KS  R+  S R+ ADF
Subjt:  SPSQSDLAQIHGSKLPSAHLAEIKADGDEL--IVPGNIVAIQ-SFRNLKEIE----KSYTRKSRSPRRFADF

Sequences

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CDS sequence

Show/hide CDS sequence

ATGCAAAGGCAATCGCTAGGCTCCCCACCAGCCTCCAAGCTCTACGGCGGCGGCCATGGCGCCGGAGCCAACTCCGACGGAGTTCCGGCCGACAATCAAAAGCGCAACAA
CAAGCACTCTCCATCTTCTTCTTCATCATTCCGATTCTCATTTCCGTCGCGGCCGGAGAAATTGGTTCACGCCATCCCTATCCTCACCGTCATCTGCTTCCTCATCCTCT
ACGGCTTCTCGCACAGTCCTTCGCAGTCAGATTTGGCTCAGATTCATGGATCCAAGCTTCCTTCGGCACATTTAGCAGAAATCAAAGCCGATGGAGATGAACTTATCGTA
CCAGGCAACATTGTGGCGATTCAAAGTTTCCGTAACCTGAAAGAGATCGAGAAATCTTATACTCGTAAATCTCGATCTCCGAGGAGATTCGCCGATTTCTAA

mRNA sequence

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GTGGGTATTGACAAAAATATTGTGTTAATTAATTATACACCATGTTGTGTTGGTGACCAATATTAAAAGATATTAATAACTGCAAAAATTTTATCTATATTAATAATTAT
TTGGGAGAAAAACTCATCTAATACAATTTTTCATTTTTTTTAAATGCAGGTGAAGGGTGCAAGTGTGAATTATTAGATAATTTGGGGGTATTATTGCAATAGTAGAAGTC
ACGAGGGGCCAAACGGAAAACTCACACAAAAAGTTATCATCACGGTACTAACCTAGACTCTGCTTCATTCTTTACCTTTATCATTTTCTCTGTACCATGCAAAGGCAATC
GCTAGGCTCCCCACCAGCCTCCAAGCTCTACGGCGGCGGCCATGGCGCCGGAGCCAACTCCGACGGAGTTCCGGCCGACAATCAAAAGCGCAACAACAAGCACTCTCCAT
CTTCTTCTTCATCATTCCGATTCTCATTTCCGTCGCGGCCGGAGAAATTGGTTCACGCCATCCCTATCCTCACCGTCATCTGCTTCCTCATCCTCTACGGCTTCTCGCAC
AGTCCTTCGCAGTCAGATTTGGCTCAGATTCATGGATCCAAGCTTCCTTCGGCACATTTAGCAGAAATCAAAGCCGATGGAGATGAACTTATCGTACCAGGCAACATTGT
GGCGATTCAAAGTTTCCGTAACCTGAAAGAGATCGAGAAATCTTATACTCGTAAATCTCGATCTCCGAGGAGATTCGCCGATTTCTAAACTCCGCATTTCCGATTATCTT
ATCTGCCGGTAAAATCTCACCGATCTCGTTTTCACCGTACGGTTTTTTTTTTTCTGTTGATATTTTTTTTAAAAATAGAATCTGGACATCAAATACTCCGTCAGATTAGA
TTTTTTTGTTTTTCTCTGCTTATAAAATCTTTTCTGTTCCTTTTTCTTTTTGTTTCTTTTCCTTTTTCAATAGTTTTTTTTTGTTTTTTTGTTTCTTTTCCATCAAATAT
TCCGACAAATATATATATATATATATAGGTAAGATAAATGAACAAGATATATTTGTAAG

Protein sequence

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MQRQSLGSPPASKLYGGGHGAGANSDGVPADNQKRNNKHSPSSSSSFRFSFPSRPEKLVHAIPILTVICFLILYGFSHSPSQSDLAQIHGSKLPSAHLAEIKADGDELIV
PGNIVAIQSFRNLKEIEKSYTRKSRSPRRFADF

Sed0017013 (gene) of Chayote v1 genome