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Sed0017028 (gene) of Chayote v1 genome

Gene IDSed0017028
OrganismSechium edule (Chayote v1)
Description50S ribosomal protein L17
Genome locationLG04:15628039..15628389
RNA-Seq ExpressionSed0017028
SyntenySed0017028
Gene Ontology termsGO:0006412 - translation (biological process)
GO:0022625 - cytosolic large ribosomal subunit (cellular component)
GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domainsIPR000456 - Ribosomal protein L17
IPR036373 - Ribosomal protein L17 superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
PKI41011.1 hypothetical protein CRG98_038539 [Punica granatum]2.4e-5698.28Show/hide
Query:  MRHGRRVPKLNRPPDQRRALLRGLTTQLLKHGRIKTTRARASAVRKYIDKMITLAKDGSLHKRRQALGFIYEKQIVHALFAEVQDRYGERNGGYTRIIRT
        MRHGR+VPKLNRPPDQRRALLRGLTTQLLKHGRIKTTRARASAVRKYIDKMITLAKDGSLHKRRQALGFIYEKQIVHALFAEVQDRYGERNGGYTRIIRT
Subjt:  MRHGRRVPKLNRPPDQRRALLRGLTTQLLKHGRIKTTRARASAVRKYIDKMITLAKDGSLHKRRQALGFIYEKQIVHALFAEVQDRYGERNGGYTRIIRT

Query:  LPRRGDNAPMAFIELV
        LPRRGDNAPMA+IELV
Subjt:  LPRRGDNAPMAFIELV

TXG57468.1 hypothetical protein EZV62_015297 [Acer yangbiense]3.1e-5698.28Show/hide
Query:  MRHGRRVPKLNRPPDQRRALLRGLTTQLLKHGRIKTTRARASAVRKYIDKMITLAKDGSLHKRRQALGFIYEKQIVHALFAEVQDRYGERNGGYTRIIRT
        MRHGRRVPKLNRPPDQRRALLRGLTTQLLKHGRIKTTRARASAVRKY+DKMITLAKDGSLHKRRQALGFIYEKQIVHALFAEV DRYGERNGGYTRIIRT
Subjt:  MRHGRRVPKLNRPPDQRRALLRGLTTQLLKHGRIKTTRARASAVRKYIDKMITLAKDGSLHKRRQALGFIYEKQIVHALFAEVQDRYGERNGGYTRIIRT

Query:  LPRRGDNAPMAFIELV
        LPRRGDNAPMAFIELV
Subjt:  LPRRGDNAPMAFIELV

XP_010554508.1 PREDICTED: 50S ribosomal protein L17, chloroplastic [Tarenaya hassleriana]3.1e-5697.41Show/hide
Query:  MRHGRRVPKLNRPPDQRRALLRGLTTQLLKHGRIKTTRARASAVRKYIDKMITLAKDGSLHKRRQALGFIYEKQIVHALFAEVQDRYGERNGGYTRIIRT
        MRHGRRVPKLNRPPDQRRALLRGLTTQLLKHGRIKTTRARASAVRKYIDKM+TLAKDGSLHKRRQALGFIYEKQIVHALFAEVQDRYG+RNGGYTRIIRT
Subjt:  MRHGRRVPKLNRPPDQRRALLRGLTTQLLKHGRIKTTRARASAVRKYIDKMITLAKDGSLHKRRQALGFIYEKQIVHALFAEVQDRYGERNGGYTRIIRT

Query:  LPRRGDNAPMAFIELV
        LPRRGDNAPMA+IELV
Subjt:  LPRRGDNAPMAFIELV

XP_031387705.1 50S ribosomal protein L17, chloroplastic [Punica granatum]2.4e-5698.28Show/hide
Query:  MRHGRRVPKLNRPPDQRRALLRGLTTQLLKHGRIKTTRARASAVRKYIDKMITLAKDGSLHKRRQALGFIYEKQIVHALFAEVQDRYGERNGGYTRIIRT
        MRHGR+VPKLNRPPDQRRALLRGLTTQLLKHGRIKTTRARASAVRKYIDKMITLAKDGSLHKRRQALGFIYEKQIVHALFAEVQDRYGERNGGYTRIIRT
Subjt:  MRHGRRVPKLNRPPDQRRALLRGLTTQLLKHGRIKTTRARASAVRKYIDKMITLAKDGSLHKRRQALGFIYEKQIVHALFAEVQDRYGERNGGYTRIIRT

Query:  LPRRGDNAPMAFIELV
        LPRRGDNAPMA+IELV
Subjt:  LPRRGDNAPMAFIELV

XP_039128090.1 50S ribosomal protein L17, chloroplastic [Dioscorea cayenensis subsp. rotundata]3.1e-5697.41Show/hide
Query:  MRHGRRVPKLNRPPDQRRALLRGLTTQLLKHGRIKTTRARASAVRKYIDKMITLAKDGSLHKRRQALGFIYEKQIVHALFAEVQDRYGERNGGYTRIIRT
        MRHG+RVPKLNRPPDQRRALLRGLTTQLLKHGRIKTTRARASA+RKY+DKMITLAKDGSLHKRRQALGFIYEKQIVHALFAEVQDRYGERNGGYTRIIRT
Subjt:  MRHGRRVPKLNRPPDQRRALLRGLTTQLLKHGRIKTTRARASAVRKYIDKMITLAKDGSLHKRRQALGFIYEKQIVHALFAEVQDRYGERNGGYTRIIRT

Query:  LPRRGDNAPMAFIELV
        LPRRGDNAPMAFIELV
Subjt:  LPRRGDNAPMAFIELV

TrEMBL top hitse value%identityAlignment
A0A067FM28 Uncharacterized protein2.0e-5697.41Show/hide
Query:  MRHGRRVPKLNRPPDQRRALLRGLTTQLLKHGRIKTTRARASAVRKYIDKMITLAKDGSLHKRRQALGFIYEKQIVHALFAEVQDRYGERNGGYTRIIRT
        MRHGRRVPKLNRPPDQRRALLRGLTTQLLKHGRIKTTRARASAVRKY+DKMITLAKDGSLHKRRQALGFIYEKQIVHALFAEVQ+RYGERNGGYTRIIRT
Subjt:  MRHGRRVPKLNRPPDQRRALLRGLTTQLLKHGRIKTTRARASAVRKYIDKMITLAKDGSLHKRRQALGFIYEKQIVHALFAEVQDRYGERNGGYTRIIRT

Query:  LPRRGDNAPMAFIELV
        LPRRGDNAPMA+IELV
Subjt:  LPRRGDNAPMAFIELV

A0A218XAR1 50S ribosomal protein L17, chloroplastic1.2e-5698.28Show/hide
Query:  MRHGRRVPKLNRPPDQRRALLRGLTTQLLKHGRIKTTRARASAVRKYIDKMITLAKDGSLHKRRQALGFIYEKQIVHALFAEVQDRYGERNGGYTRIIRT
        MRHGR+VPKLNRPPDQRRALLRGLTTQLLKHGRIKTTRARASAVRKYIDKMITLAKDGSLHKRRQALGFIYEKQIVHALFAEVQDRYGERNGGYTRIIRT
Subjt:  MRHGRRVPKLNRPPDQRRALLRGLTTQLLKHGRIKTTRARASAVRKYIDKMITLAKDGSLHKRRQALGFIYEKQIVHALFAEVQDRYGERNGGYTRIIRT

Query:  LPRRGDNAPMAFIELV
        LPRRGDNAPMA+IELV
Subjt:  LPRRGDNAPMAFIELV

A0A2I0IAJ2 Uncharacterized protein1.2e-5698.28Show/hide
Query:  MRHGRRVPKLNRPPDQRRALLRGLTTQLLKHGRIKTTRARASAVRKYIDKMITLAKDGSLHKRRQALGFIYEKQIVHALFAEVQDRYGERNGGYTRIIRT
        MRHGR+VPKLNRPPDQRRALLRGLTTQLLKHGRIKTTRARASAVRKYIDKMITLAKDGSLHKRRQALGFIYEKQIVHALFAEVQDRYGERNGGYTRIIRT
Subjt:  MRHGRRVPKLNRPPDQRRALLRGLTTQLLKHGRIKTTRARASAVRKYIDKMITLAKDGSLHKRRQALGFIYEKQIVHALFAEVQDRYGERNGGYTRIIRT

Query:  LPRRGDNAPMAFIELV
        LPRRGDNAPMA+IELV
Subjt:  LPRRGDNAPMAFIELV

A0A5C7HKT9 Uncharacterized protein1.5e-5698.28Show/hide
Query:  MRHGRRVPKLNRPPDQRRALLRGLTTQLLKHGRIKTTRARASAVRKYIDKMITLAKDGSLHKRRQALGFIYEKQIVHALFAEVQDRYGERNGGYTRIIRT
        MRHGRRVPKLNRPPDQRRALLRGLTTQLLKHGRIKTTRARASAVRKY+DKMITLAKDGSLHKRRQALGFIYEKQIVHALFAEV DRYGERNGGYTRIIRT
Subjt:  MRHGRRVPKLNRPPDQRRALLRGLTTQLLKHGRIKTTRARASAVRKYIDKMITLAKDGSLHKRRQALGFIYEKQIVHALFAEVQDRYGERNGGYTRIIRT

Query:  LPRRGDNAPMAFIELV
        LPRRGDNAPMAFIELV
Subjt:  LPRRGDNAPMAFIELV

A0A6J1I1G7 50S ribosomal protein L17, chloroplastic3.4e-5696.55Show/hide
Query:  MRHGRRVPKLNRPPDQRRALLRGLTTQLLKHGRIKTTRARASAVRKYIDKMITLAKDGSLHKRRQALGFIYEKQIVHALFAEVQDRYGERNGGYTRIIRT
        MRHG+RVPKLNRPPDQRRALLRGLTTQLLKHGRIKTTRARASAVRKY+DKMITLAKDGSLHKRRQALGFIYEKQIVHALFAEV+DRYGERNGGYTRI+RT
Subjt:  MRHGRRVPKLNRPPDQRRALLRGLTTQLLKHGRIKTTRARASAVRKYIDKMITLAKDGSLHKRRQALGFIYEKQIVHALFAEVQDRYGERNGGYTRIIRT

Query:  LPRRGDNAPMAFIELV
        LPRRGDNAPMAFIELV
Subjt:  LPRRGDNAPMAFIELV

SwissProt top hitse value%identityAlignment
B0C429 50S ribosomal protein L173.9e-4172.17Show/hide
Query:  MRHGRRVPKLNRPPDQRRALLRGLTTQLLKHGRIKTTRARASAVRKYIDKMITLAKDGSLHKRRQALGFIYEKQIVHALFAEVQDRYGERNGGYTRIIRT
        MRH  RV KL +P DQR+ALLR L+TQL++HGR+ TT+ARA AVR  ++KMITLAKDGSL  RRQALG+IY+KQ+VHALF +V DRYG+RNGGYTRIIRT
Subjt:  MRHGRRVPKLNRPPDQRRALLRGLTTQLLKHGRIKTTRARASAVRKYIDKMITLAKDGSLHKRRQALGFIYEKQIVHALFAEVQDRYGERNGGYTRIIRT

Query:  LPRRGDNAPMAFIEL
        + RRGDNA MA IEL
Subjt:  LPRRGDNAPMAFIEL

B1XJI3 50S ribosomal protein L171.3e-4168.97Show/hide
Query:  MRHGRRVPKLNRPPDQRRALLRGLTTQLLKHGRIKTTRARASAVRKYIDKMITLAKDGSLHKRRQALGFIYEKQIVHALFAEVQDRYGERNGGYTRIIRT
        MRHG RVP+L RP DQR+ALLR LTTQL++HG++KTT+ARA AVR  +D+MITLAKDGSL  RR+ALG++Y+K +VHALFA+ +DRYG+R GGY+R++RT
Subjt:  MRHGRRVPKLNRPPDQRRALLRGLTTQLLKHGRIKTTRARASAVRKYIDKMITLAKDGSLHKRRQALGFIYEKQIVHALFAEVQDRYGERNGGYTRIIRT

Query:  LPRRGDNAPMAFIELV
        + RRGDNA MA IELV
Subjt:  LPRRGDNAPMAFIELV

O80363 50S ribosomal protein L17, chloroplastic3.0e-5793.97Show/hide
Query:  MRHGRRVPKLNRPPDQRRALLRGLTTQLLKHGRIKTTRARASAVRKYIDKMITLAKDGSLHKRRQALGFIYEKQIVHALFAEVQDRYGERNGGYTRIIRT
        MRHGR+VPKLNRPPDQRRALLRGLTTQLLKHGRIKTT+ARA AVRKY+DKMIT+AKDGSLHKRRQALGFIYEKQIVHALFAEV DRYGERNGGYTRIIRT
Subjt:  MRHGRRVPKLNRPPDQRRALLRGLTTQLLKHGRIKTTRARASAVRKYIDKMITLAKDGSLHKRRQALGFIYEKQIVHALFAEVQDRYGERNGGYTRIIRT

Query:  LPRRGDNAPMAFIELV
        LPRRGDNAPMA+IELV
Subjt:  LPRRGDNAPMAFIELV

P82194 50S ribosomal protein L17, chloroplastic4.4e-5387.07Show/hide
Query:  MRHGRRVPKLNRPPDQRRALLRGLTTQLLKHGRIKTTRARASAVRKYIDKMITLAKDGSLHKRRQALGFIYEKQIVHALFAEVQDRYGERNGGYTRIIRT
        M+HGR++ +L+RP DQRRALLRGLTTQLLKHGRIKTTRA+ASA+RKY+DKMITLAK+GSLHKRRQALGFIYEKQIVHALFAEV +RYG+RNGGYTRIIRT
Subjt:  MRHGRRVPKLNRPPDQRRALLRGLTTQLLKHGRIKTTRARASAVRKYIDKMITLAKDGSLHKRRQALGFIYEKQIVHALFAEVQDRYGERNGGYTRIIRT

Query:  LPRRGDNAPMAFIELV
        LPRRGDNAPMA+IELV
Subjt:  LPRRGDNAPMAFIELV

Q9M385 50S ribosomal protein L17, chloroplastic3.0e-5793.97Show/hide
Query:  MRHGRRVPKLNRPPDQRRALLRGLTTQLLKHGRIKTTRARASAVRKYIDKMITLAKDGSLHKRRQALGFIYEKQIVHALFAEVQDRYGERNGGYTRIIRT
        MRHGRRVPKLNRPPDQR+ALLRGLTTQLLKHGRIKTTRARASA+RK++DKMITLAKDGSLHKRRQALG+IYEKQIVHALFAEV DRYGERNGGYTRIIRT
Subjt:  MRHGRRVPKLNRPPDQRRALLRGLTTQLLKHGRIKTTRARASAVRKYIDKMITLAKDGSLHKRRQALGFIYEKQIVHALFAEVQDRYGERNGGYTRIIRT

Query:  LPRRGDNAPMAFIELV
        LPRRGDNAPMA+IELV
Subjt:  LPRRGDNAPMAFIELV

Arabidopsis top hitse value%identityAlignment
AT3G54210.1 Ribosomal protein L17 family protein2.1e-5893.97Show/hide
Query:  MRHGRRVPKLNRPPDQRRALLRGLTTQLLKHGRIKTTRARASAVRKYIDKMITLAKDGSLHKRRQALGFIYEKQIVHALFAEVQDRYGERNGGYTRIIRT
        MRHGRRVPKLNRPPDQR+ALLRGLTTQLLKHGRIKTTRARASA+RK++DKMITLAKDGSLHKRRQALG+IYEKQIVHALFAEV DRYGERNGGYTRIIRT
Subjt:  MRHGRRVPKLNRPPDQRRALLRGLTTQLLKHGRIKTTRARASAVRKYIDKMITLAKDGSLHKRRQALGFIYEKQIVHALFAEVQDRYGERNGGYTRIIRT

Query:  LPRRGDNAPMAFIELV
        LPRRGDNAPMA+IELV
Subjt:  LPRRGDNAPMAFIELV

AT5G09770.1 Ribosomal protein L17 family protein1.7e-2348.15Show/hide
Query:  KLNRPPDQRRALLRGLTTQLLKHGRIKTTRARASAVRKYIDKMITLAKDGSLHKRRQALGFIYEKQIVHALFAEVQDRYGERNGGYTRIIRTLPRRGDNA
        KL RP   R ++LR + +QL+KH RI+TT  +A  VR+  D MI L K+GSL   R+A GF+    ++H +F E+  RY +R GGYTR++RT  R GD A
Subjt:  KLNRPPDQRRALLRGLTTQLLKHGRIKTTRARASAVRKYIDKMITLAKDGSLHKRRQALGFIYEKQIVHALFAEVQDRYGERNGGYTRIIRTLPRRGDNA

Query:  PMAFIELV
        PMA+IE +
Subjt:  PMAFIELV

AT5G64650.1 Ribosomal protein L17 family protein8.3e-2347.22Show/hide
Query:  KLNRPPDQRRALLRGLTTQLLKHGRIKTTRARASAVRKYIDKMITLAKDGSLHKRRQALGFIYEKQIVHALFAEVQDRYGERNGGYTRIIRTLPRRGDNA
        KL RP   R ++LR + +QL++H RI+TT  +A  VR+  D MI L K+GSL   R+A GF+    ++H +F E+  RY +R GGYTR++RT  R GD A
Subjt:  KLNRPPDQRRALLRGLTTQLLKHGRIKTTRARASAVRKYIDKMITLAKDGSLHKRRQALGFIYEKQIVHALFAEVQDRYGERNGGYTRIIRTLPRRGDNA

Query:  PMAFIELV
        PMA+IE +
Subjt:  PMAFIELV


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGACATGGCAGGCGGGTACCTAAGCTCAACAGGCCTCCTGACCAACGGCGTGCACTATTGCGAGGGCTCACCACCCAACTCCTCAAGCATGGTCGGATCAAAACCAC
GAGAGCAAGAGCAAGTGCTGTACGTAAGTATATTGACAAAATGATCACATTAGCTAAGGACGGTTCATTGCATAAAAGGAGACAGGCGTTAGGCTTCATCTACGAAAAGC
AGATTGTTCATGCTTTATTTGCAGAAGTCCAAGATAGGTATGGGGAAAGAAATGGTGGATATACCAGGATTATAAGAACACTACCTAGGCGAGGGGACAATGCACCCATG
GCATTCATTGAGCTTGTTTGA
mRNA sequenceShow/hide mRNA sequence
ATGAGACATGGCAGGCGGGTACCTAAGCTCAACAGGCCTCCTGACCAACGGCGTGCACTATTGCGAGGGCTCACCACCCAACTCCTCAAGCATGGTCGGATCAAAACCAC
GAGAGCAAGAGCAAGTGCTGTACGTAAGTATATTGACAAAATGATCACATTAGCTAAGGACGGTTCATTGCATAAAAGGAGACAGGCGTTAGGCTTCATCTACGAAAAGC
AGATTGTTCATGCTTTATTTGCAGAAGTCCAAGATAGGTATGGGGAAAGAAATGGTGGATATACCAGGATTATAAGAACACTACCTAGGCGAGGGGACAATGCACCCATG
GCATTCATTGAGCTTGTTTGA
Protein sequenceShow/hide protein sequence
MRHGRRVPKLNRPPDQRRALLRGLTTQLLKHGRIKTTRARASAVRKYIDKMITLAKDGSLHKRRQALGFIYEKQIVHALFAEVQDRYGERNGGYTRIIRTLPRRGDNAPM
AFIELV