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Sed0017043 (gene) of Chayote v1 genome

Gene IDSed0017043
OrganismSechium edule (Chayote v1)
Descriptionsuccinate dehydrogenase subunit 6, mitochondrial-like
Genome locationLG12:24133024..24135735
RNA-Seq ExpressionSed0017043
SyntenySed0017043
Gene Ontology termsGO:0005749 - mitochondrial respiratory chain complex II, succinate dehydrogenase complex (ubiquinone) (cellular component)
InterPro domainsIPR034574 - Succinate dehydrogenase subunit 6, mitochondrial


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6590149.1 Succinate dehydrogenase subunit 6, mitochondrial, partial [Cucurbita argyrosperma subsp. sororia]6.8e-3274.49Show/hide
Query:  MENSSSPESLRRKQRNGYKDFWSERLSILDNYSPSVQREKPLPLWPRSDVHNFIASDPVHGPALKTTREAANFGLKGSVIGVVSTVGVAWKYSRSLHG
        ME+SSS +S  RK   GYK+FWSER SILDNYSP VQR+KPLP W  SDV  FIA +PVHGPALKT REA NFGL G+VIG VST GVAWKYSRSLHG
Subjt:  MENSSSPESLRRKQRNGYKDFWSERLSILDNYSPSVQREKPLPLWPRSDVHNFIASDPVHGPALKTTREAANFGLKGSVIGVVSTVGVAWKYSRSLHG

XP_011660175.1 succinate dehydrogenase subunit 6, mitochondrial [Cucumis sativus]4.0e-3274.49Show/hide
Query:  MENSSSPESLRRKQRNGYKDFWSERLSILDNYSPSVQREKPLPLWPRSDVHNFIASDPVHGPALKTTREAANFGLKGSVIGVVSTVGVAWKYSRSLHG
        ME+SSS +S  RK   GYK+FWS+R SILDNYSP VQR+ PLP W  SDV  FIASDPVHGP LKT REA NFGL GSVIG VST GVAWKYSRSLHG
Subjt:  MENSSSPESLRRKQRNGYKDFWSERLSILDNYSPSVQREKPLPLWPRSDVHNFIASDPVHGPALKTTREAANFGLKGSVIGVVSTVGVAWKYSRSLHG

XP_022153276.1 succinate dehydrogenase subunit 6, mitochondrial [Momordica charantia]6.2e-3376.53Show/hide
Query:  MENSSSPESLRRKQRNGYKDFWSERLSILDNYSPSVQREKPLPLWPRSDVHNFIASDPVHGPALKTTREAANFGLKGSVIGVVSTVGVAWKYSRSLHG
        ME+SSS +S  RK   GYK+FWSER SILDNY+P VQREKPLP W  SDV  FIASDPVHGP LKT REA NFGL GSVIG VST GVAWKYSRSLHG
Subjt:  MENSSSPESLRRKQRNGYKDFWSERLSILDNYSPSVQREKPLPLWPRSDVHNFIASDPVHGPALKTTREAANFGLKGSVIGVVSTVGVAWKYSRSLHG

XP_022927277.1 succinate dehydrogenase subunit 6, mitochondrial-like [Cucurbita moschata]4.7e-3376.53Show/hide
Query:  MENSSSPESLRRKQRNGYKDFWSERLSILDNYSPSVQREKPLPLWPRSDVHNFIASDPVHGPALKTTREAANFGLKGSVIGVVSTVGVAWKYSRSLHG
        ME+SSS +S  RK   GYK+FWSER SILDNYSP VQREKPLP W  SDV  FIASDPVHGP LKT REA NFGL GS+IG VST GVAWKYSRSLHG
Subjt:  MENSSSPESLRRKQRNGYKDFWSERLSILDNYSPSVQREKPLPLWPRSDVHNFIASDPVHGPALKTTREAANFGLKGSVIGVVSTVGVAWKYSRSLHG

XP_022965868.1 succinate dehydrogenase subunit 6, mitochondrial-like [Cucurbita maxima]4.7e-3376.53Show/hide
Query:  MENSSSPESLRRKQRNGYKDFWSERLSILDNYSPSVQREKPLPLWPRSDVHNFIASDPVHGPALKTTREAANFGLKGSVIGVVSTVGVAWKYSRSLHG
        ME+SSS +S  RK   GYK+FWSER SILDNYSP VQREKPLP W  SDV  FIASDPVHGP LKT REA NFGL GS+IG VST GVAWKYSRSLHG
Subjt:  MENSSSPESLRRKQRNGYKDFWSERLSILDNYSPSVQREKPLPLWPRSDVHNFIASDPVHGPALKTTREAANFGLKGSVIGVVSTVGVAWKYSRSLHG

TrEMBL top hitse value%identityAlignment
A0A0A0LXK1 Uncharacterized protein3.5e-3474.29Show/hide
Query:  MENSSSPESLRRKQRNGYKDFWSERLSILDNYSPSVQREKPLPLWPRSDVHNFIASDPVHGPALKTTREAANFGLKGSVIGVVSTVGVAWKYSRSLHGIQ
        ME+SSS +S  RK   GYK+FWS+R SILDNYSP VQR+ PLP W  SDV  FIASDPVHGP LKT REA NFGL GSVIG VST GVAWKYSRSLHGIQ
Subjt:  MENSSSPESLRRKQRNGYKDFWSERLSILDNYSPSVQREKPLPLWPRSDVHNFIASDPVHGPALKTTREAANFGLKGSVIGVVSTVGVAWKYSRSLHGIQ

Query:  -SCLS
         +CLS
Subjt:  -SCLS

A0A5D3DY28 Succinate dehydrogenase subunit 64.3e-3274.49Show/hide
Query:  MENSSSPESLRRKQRNGYKDFWSERLSILDNYSPSVQREKPLPLWPRSDVHNFIASDPVHGPALKTTREAANFGLKGSVIGVVSTVGVAWKYSRSLHG
        ME+SSS +S  RK   GYK+FWSER SILDNYSP VQR  PLP W  SDV  FIASDPVHGP LKT REA NFGL GSVIG VST GVAWKYS+SLHG
Subjt:  MENSSSPESLRRKQRNGYKDFWSERLSILDNYSPSVQREKPLPLWPRSDVHNFIASDPVHGPALKTTREAANFGLKGSVIGVVSTVGVAWKYSRSLHG

A0A6J1DK58 succinate dehydrogenase subunit 6, mitochondrial3.0e-3376.53Show/hide
Query:  MENSSSPESLRRKQRNGYKDFWSERLSILDNYSPSVQREKPLPLWPRSDVHNFIASDPVHGPALKTTREAANFGLKGSVIGVVSTVGVAWKYSRSLHG
        ME+SSS +S  RK   GYK+FWSER SILDNY+P VQREKPLP W  SDV  FIASDPVHGP LKT REA NFGL GSVIG VST GVAWKYSRSLHG
Subjt:  MENSSSPESLRRKQRNGYKDFWSERLSILDNYSPSVQREKPLPLWPRSDVHNFIASDPVHGPALKTTREAANFGLKGSVIGVVSTVGVAWKYSRSLHG

A0A6J1EGQ0 succinate dehydrogenase subunit 6, mitochondrial-like2.3e-3376.53Show/hide
Query:  MENSSSPESLRRKQRNGYKDFWSERLSILDNYSPSVQREKPLPLWPRSDVHNFIASDPVHGPALKTTREAANFGLKGSVIGVVSTVGVAWKYSRSLHG
        ME+SSS +S  RK   GYK+FWSER SILDNYSP VQREKPLP W  SDV  FIASDPVHGP LKT REA NFGL GS+IG VST GVAWKYSRSLHG
Subjt:  MENSSSPESLRRKQRNGYKDFWSERLSILDNYSPSVQREKPLPLWPRSDVHNFIASDPVHGPALKTTREAANFGLKGSVIGVVSTVGVAWKYSRSLHG

A0A6J1HQ77 succinate dehydrogenase subunit 6, mitochondrial-like2.3e-3376.53Show/hide
Query:  MENSSSPESLRRKQRNGYKDFWSERLSILDNYSPSVQREKPLPLWPRSDVHNFIASDPVHGPALKTTREAANFGLKGSVIGVVSTVGVAWKYSRSLHG
        ME+SSS +S  RK   GYK+FWSER SILDNYSP VQREKPLP W  SDV  FIASDPVHGP LKT REA NFGL GS+IG VST GVAWKYSRSLHG
Subjt:  MENSSSPESLRRKQRNGYKDFWSERLSILDNYSPSVQREKPLPLWPRSDVHNFIASDPVHGPALKTTREAANFGLKGSVIGVVSTVGVAWKYSRSLHG

SwissProt top hitse value%identityAlignment
Q6ZCC4 Succinate dehydrogenase subunit 6, mitochondrial9.3e-1645.78Show/hide
Query:  GYKDFWSERLSILDNYSPSVQREKPLPLWPRSDVHNFIASDPVHGPALKTTREAANFGLKGSVIGVVSTVGVAWKYSRSLHGI
        G K  W++  S LD +     R+KPLP W  +DV  FIASDPV+GP LK  RE+  F L G+++G     G+A KYS++ HG+
Subjt:  GYKDFWSERLSILDNYSPSVQREKPLPLWPRSDVHNFIASDPVHGPALKTTREAANFGLKGSVIGVVSTVGVAWKYSRSLHGI

Q941A6 Succinate dehydrogenase subunit 6, mitochondrial2.6e-2660.44Show/hide
Query:  ESLRRKQRNGYKDFWSERLSILDNYSPSVQREKPLPLWPRSDVHNFIASDPVHGPALKTTREAANFGLKGSVIGVVSTVGVAWKYSRSLHG
        ES   K  NG KDFWS+RLS  +NY+   +R+ PLP W  SDV  FIASDPVHGP LKT REA  FG+ G+ +G VST   AWKYSRS HG
Subjt:  ESLRRKQRNGYKDFWSERLSILDNYSPSVQREKPLPLWPRSDVHNFIASDPVHGPALKTTREAANFGLKGSVIGVVSTVGVAWKYSRSLHG

Arabidopsis top hitse value%identityAlignment
AT1G08480.1 unknown protein1.9e-2760.44Show/hide
Query:  ESLRRKQRNGYKDFWSERLSILDNYSPSVQREKPLPLWPRSDVHNFIASDPVHGPALKTTREAANFGLKGSVIGVVSTVGVAWKYSRSLHG
        ES   K  NG KDFWS+RLS  +NY+   +R+ PLP W  SDV  FIASDPVHGP LKT REA  FG+ G+ +G VST   AWKYSRS HG
Subjt:  ESLRRKQRNGYKDFWSERLSILDNYSPSVQREKPLPLWPRSDVHNFIASDPVHGPALKTTREAANFGLKGSVIGVVSTVGVAWKYSRSLHG


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAAAATTCTTCTTCTCCTGAATCGTTGAGGAGGAAGCAGCGGAATGGGTACAAGGATTTCTGGTCGGAGAGATTGTCCATCCTCGACAACTACTCCCCTTCCGTCCA
GCGCGAGAAGCCCCTTCCTCTGTGGCCCAGATCCGACGTCCACAACTTCATTGCTTCCGACCCCGTTCATGGCCCCGCTTTGAAGACTACCAGAGAAGCTGCAAACTTTG
GTCTCAAAGGAAGTGTTATTGGAGTTGTATCAACTGTAGGTGTTGCATGGAAATACTCTAGAAGTTTGCATGGTATTCAATCTTGTCTTTCCACTTATTGGCTTCAAGTT
AAGAAATGA
mRNA sequenceShow/hide mRNA sequence
GTAGCTACTAGCTGCTATTACCCCCTTTACTATTTCCCTTTCTGGGCTTGGTGTGGGCCCAAATGTAGAGAAAGAAGTCTCACAGACAGAGAGAGAAACCAGCAGGCGAT
TGCAGAGCCATGGAGATTCTGGTTTCAATGGAGTTAGGTTGTCAATTCTAAACCCTAATCTGTTTTTTGGCGCAACATTATGGAAAATTCTTCTTCTCCTGAATCGTTGA
GGAGGAAGCAGCGGAATGGGTACAAGGATTTCTGGTCGGAGAGATTGTCCATCCTCGACAACTACTCCCCTTCCGTCCAGCGCGAGAAGCCCCTTCCTCTGTGGCCCAGA
TCCGACGTCCACAACTTCATTGCTTCCGACCCCGTTCATGGCCCCGCTTTGAAGACTACCAGAGAAGCTGCAAACTTTGGTCTCAAAGGAAGTGTTATTGGAGTTGTATC
AACTGTAGGTGTTGCATGGAAATACTCTAGAAGTTTGCATGGTATTCAATCTTGTCTTTCCACTTATTGGCTTCAAGTTAAGAAATGAATCGAAGTGTAGCATTCAAACT
GTTCTTTTACGTCGTTACGACTTACAACTGTCATTGTAACAGTTACTTGTTTTAGGAGTTAAATTATAAGTAGGTTCAGTTCTTATTCTTTTTTTTCTAATTTCCAGTTT
TTTTGCAAGTCAAATATCTTACTCAACCAATGTAGCACGTTTACTTTTTATCCGAC
Protein sequenceShow/hide protein sequence
MENSSSPESLRRKQRNGYKDFWSERLSILDNYSPSVQREKPLPLWPRSDVHNFIASDPVHGPALKTTREAANFGLKGSVIGVVSTVGVAWKYSRSLHGIQSCLSTYWLQV
KK