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Sed0017060 (gene) of Chayote v1 genome

Gene IDSed0017060
OrganismSechium edule (Chayote v1)
DescriptionF-box/LRR-repeat protein
Genome locationLG05:6423855..6424420
RNA-Seq ExpressionSed0017060
SyntenySed0017060
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0042782.1 F-box/LRR-repeat protein [Cucumis melo var. makuwa]1.7e-1460.23Show/hide
Query:  MASQNPISPSLLFFLFTILLTTTTTTLSAARRLYAAVQQPQQDSLHPPATSTFTFTQPPVIAAAAAAATENFSVSLREAPAGPNPLHN
        MASQN   PSL  FLF ILL  TTT L AARRL A+  QP+ DSL PP T+TF+F QPP  A      + N+ VSLR+ PAGPNPLHN
Subjt:  MASQNPISPSLLFFLFTILLTTTTTTLSAARRLYAAVQQPQQDSLHPPATSTFTFTQPPVIAAAAAAATENFSVSLREAPAGPNPLHN

KAG6579492.1 hypothetical protein SDJN03_23940, partial [Cucurbita argyrosperma subsp. sororia]3.6e-1261.36Show/hide
Query:  MASQNPISPSLLFFLFTILLTTTTTTLSAARRLYAAVQQPQQDSLHPPATSTFTFTQPPVIAAAAAAATENFSVSLREAPAGPNPLHN
        MASQNPI+ SL  FLF ILL TTT  LSA RRL  A Q P+ DSL PP TS F+F QPP       AA++N++VS R+ PAGPNPLHN
Subjt:  MASQNPISPSLLFFLFTILLTTTTTTLSAARRLYAAVQQPQQDSLHPPATSTFTFTQPPVIAAAAAAATENFSVSLREAPAGPNPLHN

KAG6606114.1 Methyl-CpG-binding domain-containing protein 13, partial [Cucurbita argyrosperma subsp. sororia]6.2e-0451.22Show/hide
Query:  MASQNPISPSLLFFLFTILLTTTTTTLSAARRLYAAVQQPQQDSLHPPATSTFTFTQPPVIAAAAAAATENFSVSLREAPAG
        MAS NP S  LL FL TILL  TT +LSA     A  QQP  DSL PP +STF+  + P  A     A +N +VSLR+ PAG
Subjt:  MASQNPISPSLLFFLFTILLTTTTTTLSAARRLYAAVQQPQQDSLHPPATSTFTFTQPPVIAAAAAAATENFSVSLREAPAG

KGN50125.1 hypothetical protein Csa_000058 [Cucumis sativus]1.5e-1356.67Show/hide
Query:  MASQNPISPSLLFFLFTILLTTTTTTLSAARRLYAAVQQPQQD--SLHPPATSTFTFTQPPVIAAAAAAATENFSVSLREAPAGPNPLHN
        MASQN I P+ LF    ++L TTTT L AARR   +  QP+ D  SLHPP TSTF+FTQPP  A      + N+ VSLR+ PAGPNPLHN
Subjt:  MASQNPISPSLLFFLFTILLTTTTTTLSAARRLYAAVQQPQQD--SLHPPATSTFTFTQPPVIAAAAAAATENFSVSLREAPAGPNPLHN

TrEMBL top hitse value%identityAlignment
A0A0A0KKA9 Uncharacterized protein7.1e-1456.67Show/hide
Query:  MASQNPISPSLLFFLFTILLTTTTTTLSAARRLYAAVQQPQQD--SLHPPATSTFTFTQPPVIAAAAAAATENFSVSLREAPAGPNPLHN
        MASQN I P+ LF    ++L TTTT L AARR   +  QP+ D  SLHPP TSTF+FTQPP  A      + N+ VSLR+ PAGPNPLHN
Subjt:  MASQNPISPSLLFFLFTILLTTTTTTLSAARRLYAAVQQPQQD--SLHPPATSTFTFTQPPVIAAAAAAATENFSVSLREAPAGPNPLHN

A0A5A7THA6 F-box/LRR-repeat protein8.4e-1560.23Show/hide
Query:  MASQNPISPSLLFFLFTILLTTTTTTLSAARRLYAAVQQPQQDSLHPPATSTFTFTQPPVIAAAAAAATENFSVSLREAPAGPNPLHN
        MASQN   PSL  FLF ILL  TTT L AARRL A+  QP+ DSL PP T+TF+F QPP  A      + N+ VSLR+ PAGPNPLHN
Subjt:  MASQNPISPSLLFFLFTILLTTTTTTLSAARRLYAAVQQPQQDSLHPPATSTFTFTQPPVIAAAAAAATENFSVSLREAPAGPNPLHN

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTTCCCAAAACCCCATTTCCCCATCTCTCCTCTTTTTCCTCTTCACAATTCTCCTCACCACCACCACCACCACTCTCTCCGCCGCTCGCCGCCTCTACGCCGCCGT
ACAGCAACCGCAACAAGATTCTCTCCACCCACCCGCCACCTCAACATTTACATTCACACAGCCGCCAGTCATCGCCGCCGCCGCCGCTGCCGCCACCGAAAACTTCTCCG
TCTCGCTCCGCGAAGCCCCCGCCGGTCCGAACCCGCTTCATAACTAA
mRNA sequenceShow/hide mRNA sequence
GTTGCCATCTTTCCTTATTAAAAAGACATTTCCCCATTTCCCATTCCAATTTCTTCTTCCAATTCCTTCACTTCCTCTAATTCCATTTTAAAAAACCTCTCTTTTTTCTT
TCTCCTTCATTGAAAAAACTTTAAAATAAAAAAACAAAAAACTATCCCTCAAACAATATGGCTTCCCAAAACCCCATTTCCCCATCTCTCCTCTTTTTCCTCTTCACAAT
TCTCCTCACCACCACCACCACCACTCTCTCCGCCGCTCGCCGCCTCTACGCCGCCGTACAGCAACCGCAACAAGATTCTCTCCACCCACCCGCCACCTCAACATTTACAT
TCACACAGCCGCCAGTCATCGCCGCCGCCGCCGCTGCCGCCACCGAAAACTTCTCCGTCTCGCTCCGCGAAGCCCCCGCCGGTCCGAACCCGCTTCATAACTAAACCGAA
TCAACATTGTGTCTCCGGTTCGAAATACAATTTTCGATTTTCTTTTACAACATCAACTAATAATGTCTCCCCAGTTACCAACTTTTTGCACTATATATTATAGGCCAATT
TTATACAGAAAAATTG
Protein sequenceShow/hide protein sequence
MASQNPISPSLLFFLFTILLTTTTTTLSAARRLYAAVQQPQQDSLHPPATSTFTFTQPPVIAAAAAAATENFSVSLREAPAGPNPLHN