; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Sed0017066 (gene) of Chayote v1 genome

Gene IDSed0017066
OrganismSechium edule (Chayote v1)
DescriptionVQ domain-containing protein
Genome locationLG11:1830973..1831651
RNA-Seq ExpressionSed0017066
SyntenySed0017066
Gene Ontology termsGO:0051091 - positive regulation of DNA-binding transcription factor activity (biological process)
InterPro domainsIPR008889 - VQ
IPR039335 - Sigma factor binding protein 1/2


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0063579.1 VQ motif-containing protein [Cucumis melo var. makuwa]9.6e-2053.38Show/hide
Query:  MEKFRNQLIPNIHPLHQKNIQAPNK-AKMETIDKPIKVKYISNPMMVKANNESEFRAIVQKLTGQDSP-HDAFDIQSHEQFSHDVFYPPP--------ST
        ME     L  + H  H+K  Q  NK   ++  +KPIKVKYIS+PMMVKANNESEFRAIVQKLTGQ SP HDA   QS + F+H  FYPPP        S 
Subjt:  MEKFRNQLIPNIHPLHQKNIQAPNK-AKMETIDKPIKVKYISNPMMVKANNESEFRAIVQKLTGQDSP-HDAFDIQSHEQFSHDVFYPPP--------ST

Query:  DAKDRNGSVFSGVY--DPIGVG-EGHEWVDEIEGSFSGVQA-SYVDIW
        D +D  GS    V   D I  G EG  W  E+EGSFSG QA S V+IW
Subjt:  DAKDRNGSVFSGVY--DPIGVG-EGHEWVDEIEGSFSGVQA-SYVDIW

KAE8651551.1 hypothetical protein Csa_019210 [Cucumis sativus]1.0e-2155.03Show/hide
Query:  MEKFRNQLIPNIHPLHQKNIQAPNKAKMETIDKPIKVKYISNPMMVKANNESEFRAIVQKLTGQDSPHDAFDIQSHEQFSHDVFYPPP-------STDAK
        ME F   L  N H  H+K  Q  NKA ++  +KPIKVKYIS+PMMVKANNESEFRAIVQKLTGQ SP    D QS + F+H VFYPPP       S D K
Subjt:  MEKFRNQLIPNIHPLHQKNIQAPNKAKMETIDKPIKVKYISNPMMVKANNESEFRAIVQKLTGQDSPHDAFDIQSHEQFSHDVFYPPP-------STDAK

Query:  DRNGSVFSG--VYDPIGVG-EGHEWVDEIE-GSFSGVQA-SYVDIWRRS
        D  G+  SG  ++D I  G EG  W  E+E GSFSG QA S V+IW ++
Subjt:  DRNGSVFSG--VYDPIGVG-EGHEWVDEIE-GSFSGVQA-SYVDIWRRS

KAG6586326.1 Sigma factor binding protein 1, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia]7.3e-2054.2Show/hide
Query:  IPNIHPLHQKNIQAPNKAKMETIDKPIKVKYISNPMMVKANNESEFRAIVQKLTGQDSPHDAFDIQSHEQFSHDVFYPPPST----DAKDRNGSVFSGVY
        +PN H  H+K   +  +A M   +KPIKVKYIS+PMMVKA+NE EFRAIVQKLTGQ S  DAFD +S ++F+H  F PP ST    D+KD    V S  Y
Subjt:  IPNIHPLHQKNIQAPNKAKMETIDKPIKVKYISNPMMVKANNESEFRAIVQKLTGQDSPHDAFDIQSHEQFSHDVFYPPPST----DAKDRNGSVFSGVY

Query:  DPIGVGEGHEWVDEIEGSFSGVQASYVDIWR
        DPI VG       E++ S  G QASYVD+WR
Subjt:  DPIGVGEGHEWVDEIEGSFSGVQASYVDIWR

XP_022938305.1 sigma factor binding protein 1, chloroplastic-like [Cucurbita moschata]2.3e-2155.73Show/hide
Query:  IPNIHPLHQKNIQAPNKAKMETIDKPIKVKYISNPMMVKANNESEFRAIVQKLTGQDSPHDAFDIQSHEQFSHDVFYPPPST----DAKDRNGSVFSGVY
        +PN H  H+K   +  +A M   +KPIKVKYIS+PMMVKANNE EFRAIVQKLTGQ S  DAFD +S ++F+H  F PP ST    D+KD    V S  Y
Subjt:  IPNIHPLHQKNIQAPNKAKMETIDKPIKVKYISNPMMVKANNESEFRAIVQKLTGQDSPHDAFDIQSHEQFSHDVFYPPPST----DAKDRNGSVFSGVY

Query:  DPIGVGEGHEWVDEIEGSFSGVQASYVDIWR
        DPIGVG       E++ S  G QASYVD+WR
Subjt:  DPIGVGEGHEWVDEIEGSFSGVQASYVDIWR

XP_038877668.1 sigma factor binding protein 1, chloroplastic-like [Benincasa hispida]5.6e-2060.91Show/hide
Query:  DKPIKVKYISNPMMVKANNESEFRAIVQKLTGQDSPHDAFDIQSHEQFSHDVFYPPPST------DAKDRNGSVFSGVYDPIGVGEGHEWVDEIEGSFSG
        +KPIKVKYIS+PMMVKANNESEFRAIVQKLTGQ SPHDAFD QS E F + VFYPPPS+      D KD   S    V          +W  E+EGSFSG
Subjt:  DKPIKVKYISNPMMVKANNESEFRAIVQKLTGQDSPHDAFDIQSHEQFSHDVFYPPPST------DAKDRNGSVFSGVYDPIGVGEGHEWVDEIEGSFSG

Query:  VQA-SYVDIW
         QA S V+ W
Subjt:  VQA-SYVDIW

TrEMBL top hitse value%identityAlignment
A0A0A0LFF9 VQ domain-containing protein1.4e-2156.16Show/hide
Query:  MEKFRNQLIPNIHPLHQKNIQAPNKAKMETIDKPIKVKYISNPMMVKANNESEFRAIVQKLTGQDSPHDAFDIQSHEQFSHDVFYPPP-------STDAK
        ME F   L  N H  H+K  Q  NKA ++  +KPIKVKYIS+PMMVKANNESEFRAIVQKLTGQ SP    D QS + F+H VFYPPP       S D K
Subjt:  MEKFRNQLIPNIHPLHQKNIQAPNKAKMETIDKPIKVKYISNPMMVKANNESEFRAIVQKLTGQDSPHDAFDIQSHEQFSHDVFYPPP-------STDAK

Query:  DRNGSVFSG--VYDPIGVG-EGHEWVDEIE-GSFSGVQA-SYVDIW
        D  G+  SG  ++D I  G EG  W  E+E GSFSG QA S V+IW
Subjt:  DRNGSVFSG--VYDPIGVG-EGHEWVDEIE-GSFSGVQA-SYVDIW

A0A1Q3BFQ5 VQ domain-containing protein3.1e-0838.52Show/hide
Query:  HQKNIQAPNKAKMETIDKPIKVKYISNPMMVKANNESEFRAIVQKLTGQDSP----HDAFDIQSHEQFSHDVFY--PPPSTDAKDRNGSVFSGVYDPIGV
        H    Q   K K    + PIKV +IS+PM+VKA+N SEFRAIVQ+LTGQ S      D +   +  + ++ V Y   PP  +    N    S    P+  
Subjt:  HQKNIQAPNKAKMETIDKPIKVKYISNPMMVKANNESEFRAIVQKLTGQDSP----HDAFDIQSHEQFSHDVFY--PPPSTDAKDRNGSVFSGVYDPIGV

Query:  GEGHEWVDEIEGSFSGVQASYV
         +G  W D+ E SF G+Q+SY+
Subjt:  GEGHEWVDEIEGSFSGVQASYV

A0A5A7VDH6 VQ motif-containing protein4.6e-2053.38Show/hide
Query:  MEKFRNQLIPNIHPLHQKNIQAPNK-AKMETIDKPIKVKYISNPMMVKANNESEFRAIVQKLTGQDSP-HDAFDIQSHEQFSHDVFYPPP--------ST
        ME     L  + H  H+K  Q  NK   ++  +KPIKVKYIS+PMMVKANNESEFRAIVQKLTGQ SP HDA   QS + F+H  FYPPP        S 
Subjt:  MEKFRNQLIPNIHPLHQKNIQAPNK-AKMETIDKPIKVKYISNPMMVKANNESEFRAIVQKLTGQDSP-HDAFDIQSHEQFSHDVFYPPP--------ST

Query:  DAKDRNGSVFSGVY--DPIGVG-EGHEWVDEIEGSFSGVQA-SYVDIW
        D +D  GS    V   D I  G EG  W  E+EGSFSG QA S V+IW
Subjt:  DAKDRNGSVFSGVY--DPIGVG-EGHEWVDEIEGSFSGVQA-SYVDIW

A0A6J1CME4 sigma factor binding protein 1, chloroplastic-like3.1e-1651.85Show/hide
Query:  IDKPIKVKYISNPMMVKANNESEFRAIVQKLTGQDSPHDAFD---IQSHEQFSHDVFYPPPSTDAKDRNGSVFSGVYDPIG-VGEGHEWVDEIEGSFSGV
        ++KPIKVKYISNPMMVKAN+ESEFR IVQ+LTGQ+SP DAF+       E+ +H  + PPPST         +  V   +G +GEG    DE++G FSG 
Subjt:  IDKPIKVKYISNPMMVKANNESEFRAIVQKLTGQDSPHDAFD---IQSHEQFSHDVFYPPPSTDAKDRNGSVFSGVYDPIG-VGEGHEWVDEIEGSFSGV

Query:  QASYVDIW
        QAS V+ +
Subjt:  QASYVDIW

A0A6J1FJE0 sigma factor binding protein 1, chloroplastic-like1.1e-2155.73Show/hide
Query:  IPNIHPLHQKNIQAPNKAKMETIDKPIKVKYISNPMMVKANNESEFRAIVQKLTGQDSPHDAFDIQSHEQFSHDVFYPPPST----DAKDRNGSVFSGVY
        +PN H  H+K   +  +A M   +KPIKVKYIS+PMMVKANNE EFRAIVQKLTGQ S  DAFD +S ++F+H  F PP ST    D+KD    V S  Y
Subjt:  IPNIHPLHQKNIQAPNKAKMETIDKPIKVKYISNPMMVKANNESEFRAIVQKLTGQDSPHDAFDIQSHEQFSHDVFYPPPST----DAKDRNGSVFSGVY

Query:  DPIGVGEGHEWVDEIEGSFSGVQASYVDIWR
        DPIGVG       E++ S  G QASYVD+WR
Subjt:  DPIGVGEGHEWVDEIEGSFSGVQASYVDIWR

SwissProt top hitse value%identityAlignment
O80669 Sigma factor binding protein 2, chloroplastic2.0e-0455.32Show/hide
Query:  IQAPNKAKMETIDKPIKVKYISNPMMVKANNESEFRAIVQKLTGQDS
        I    K K  T  KPIKV+YISNPM V+    S+FR +VQ+LTGQD+
Subjt:  IQAPNKAKMETIDKPIKVKYISNPMMVKANNESEFRAIVQKLTGQDS

Q9LDH1 Sigma factor binding protein 1, chloroplastic9.0e-0537.27Show/hide
Query:  KAKMETIDKPIKVKYISNPMMVKANNESEFRAIVQKLTGQDSPHDAFDIQS---HEQFSHDVFYPPPSTDAKDR------NGSVFSGVYDPIGVGEGHEW
        K K  + +KPIKV+YISNPM V+    S+FR +VQ+LTGQ    DA D+Q    +   S D    PP+ +   R       G   S  Y+P+   E    
Subjt:  KAKMETIDKPIKVKYISNPMMVKANNESEFRAIVQKLTGQDSPHDAFDIQS---HEQFSHDVFYPPPSTDAKDR------NGSVFSGVYDPIGVGEGHEW

Query:  VDEIEGSFSG
         D++   FSG
Subjt:  VDEIEGSFSG

Arabidopsis top hitse value%identityAlignment
AT2G41180.1 VQ motif-containing protein1.4e-0555.32Show/hide
Query:  IQAPNKAKMETIDKPIKVKYISNPMMVKANNESEFRAIVQKLTGQDS
        I    K K  T  KPIKV+YISNPM V+    S+FR +VQ+LTGQD+
Subjt:  IQAPNKAKMETIDKPIKVKYISNPMMVKANNESEFRAIVQKLTGQDS

AT3G56710.1 sigma factor binding protein 16.4e-0637.27Show/hide
Query:  KAKMETIDKPIKVKYISNPMMVKANNESEFRAIVQKLTGQDSPHDAFDIQS---HEQFSHDVFYPPPSTDAKDR------NGSVFSGVYDPIGVGEGHEW
        K K  + +KPIKV+YISNPM V+    S+FR +VQ+LTGQ    DA D+Q    +   S D    PP+ +   R       G   S  Y+P+   E    
Subjt:  KAKMETIDKPIKVKYISNPMMVKANNESEFRAIVQKLTGQDSPHDAFDIQS---HEQFSHDVFYPPPSTDAKDR------NGSVFSGVYDPIGVGEGHEW

Query:  VDEIEGSFSG
         D++   FSG
Subjt:  VDEIEGSFSG


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAGAAATTTAGAAACCAGCTAATTCCTAATATTCATCCTCTTCACCAAAAAAATATCCAAGCTCCAAATAAAGCAAAAATGGAGACCATCGACAAGCCCATCAAAGT
GAAGTACATTTCCAATCCCATGATGGTCAAGGCGAACAACGAGTCCGAGTTTCGAGCCATTGTTCAGAAGCTCACCGGCCAGGACTCGCCTCATGATGCTTTCGATATTC
AATCACATGAACAATTCAGCCACGACGTATTTTATCCCCCACCGTCTACCGATGCTAAGGATCGTAATGGTTCGGTCTTCAGTGGTGTCTATGATCCGATTGGAGTCGGC
GAGGGCCATGAATGGGTTGATGAAATAGAAGGTTCTTTTTCTGGGGTTCAAGCTTCTTATGTTGATATATGGAGACGAAGTTGA
mRNA sequenceShow/hide mRNA sequence
CCTTCTCCTTCTCCTTCTTTTCATCATTATTATTATTATCATTTTTTTTTTGTGGCTTTGTTTCTCTAAATGGAGAAATTTAGAAACCAGCTAATTCCTAATATTCATCC
TCTTCACCAAAAAAATATCCAAGCTCCAAATAAAGCAAAAATGGAGACCATCGACAAGCCCATCAAAGTGAAGTACATTTCCAATCCCATGATGGTCAAGGCGAACAACG
AGTCCGAGTTTCGAGCCATTGTTCAGAAGCTCACCGGCCAGGACTCGCCTCATGATGCTTTCGATATTCAATCACATGAACAATTCAGCCACGACGTATTTTATCCCCCA
CCGTCTACCGATGCTAAGGATCGTAATGGTTCGGTCTTCAGTGGTGTCTATGATCCGATTGGAGTCGGCGAGGGCCATGAATGGGTTGATGAAATAGAAGGTTCTTTTTC
TGGGGTTCAAGCTTCTTATGTTGATATATGGAGACGAAGTTGAAAGAGAAGGTTTTATGAGTGAGAATGTTATAGTATGTTTTTATATGGGAATTTTGCATTCAATGTAT
CAGGGAAAACTGTATTTTTTTTATAATTCAACCATATTTGGCGGGAAGAATTTAAATACGAAACTTTATGGCTATCGAAATTTATTGTTGGACAATCAATATAAATTTGA
TTGTTACTGAATTGGTCAA
Protein sequenceShow/hide protein sequence
MEKFRNQLIPNIHPLHQKNIQAPNKAKMETIDKPIKVKYISNPMMVKANNESEFRAIVQKLTGQDSPHDAFDIQSHEQFSHDVFYPPPSTDAKDRNGSVFSGVYDPIGVG
EGHEWVDEIEGSFSGVQASYVDIWRRS