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Sed0017072 (gene) of Chayote v1 genome

Gene IDSed0017072
OrganismSechium edule (Chayote v1)
DescriptionRING/U-box superfamily protein
Genome locationLG01:60514096..60517509
RNA-Seq ExpressionSed0017072
SyntenySed0017072
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6570419.1 hypothetical protein SDJN03_29334, partial [Cucurbita argyrosperma subsp. sororia]2.5e-1948.41Show/hide
Query:  EGRDLRTHDGACAICLNKIALQETALPRGFEHAYC-----------------------------------ICDYMFEVSVCLLLRVSWYQPFIVEDRGET
        +G    +HDGACAICLNKI+L ETAL RG EHAYC                                   I DYMFE SVCLLLR SWY+P IV+DR ET
Subjt:  EGRDLRTHDGACAICLNKIALQETALPRGFEHAYC-----------------------------------ICDYMFEVSVCLLLRVSWYQPFIVEDRGET

Query:  YPSYDDRVEYYPYDD-----DESYLG
           YDD  EYYPY+D     +E+YLG
Subjt:  YPSYDDRVEYYPYDD-----DESYLG

XP_022153003.1 uncharacterized protein LOC111020607 [Momordica charantia]1.3e-2050Show/hide
Query:  EGRDLRTHDGACAICLNKIALQETALPRGFEHAYCIC-----------------------------------DYMFEVSVCLLLRVSWYQPFIVEDRGET
        +G    +HDGACAICLNKIALQETAL RG EHAYC+                                    DYMFE SVCLLLR SWY P +VEDR ET
Subjt:  EGRDLRTHDGACAICLNKIALQETALPRGFEHAYCIC-----------------------------------DYMFEVSVCLLLRVSWYQPFIVEDRGET

Query:  YPSYDDRVEYYPYDDD-----ESYLG
           YDD  EYYPY+DD     E YLG
Subjt:  YPSYDDRVEYYPYDDD-----ESYLG

XP_022943783.1 uncharacterized protein LOC111448431 [Cucurbita moschata]2.5e-1948.41Show/hide
Query:  EGRDLRTHDGACAICLNKIALQETALPRGFEHAYC-----------------------------------ICDYMFEVSVCLLLRVSWYQPFIVEDRGET
        +G    +HDGACAICLNKI+L ETAL RG EHAYC                                   I DYMFE SVCLLLR SWY+P IV+DR ET
Subjt:  EGRDLRTHDGACAICLNKIALQETALPRGFEHAYC-----------------------------------ICDYMFEVSVCLLLRVSWYQPFIVEDRGET

Query:  YPSYDDRVEYYPYDD-----DESYLG
           YDD  EYYPY+D     +E+YLG
Subjt:  YPSYDDRVEYYPYDD-----DESYLG

XP_023511780.1 uncharacterized protein LOC111776696 [Cucurbita pepo subsp. pepo]2.5e-1948.41Show/hide
Query:  EGRDLRTHDGACAICLNKIALQETALPRGFEHAYC-----------------------------------ICDYMFEVSVCLLLRVSWYQPFIVEDRGET
        +G    +HDGACAICLNKI+L ETAL RG EHAYC                                   I DYMFE SVCLLLR SWY+P IV+DR ET
Subjt:  EGRDLRTHDGACAICLNKIALQETALPRGFEHAYC-----------------------------------ICDYMFEVSVCLLLRVSWYQPFIVEDRGET

Query:  YPSYDDRVEYYPYDD-----DESYLG
           YDD  EYYPY+D     +E+YLG
Subjt:  YPSYDDRVEYYPYDD-----DESYLG

XP_023533579.1 uncharacterized protein LOC111795401 [Cucurbita pepo subsp. pepo]4.2e-1948.41Show/hide
Query:  EGRDLRTHDGACAICLNKIALQETALPRGFEHAYC-----------------------------------ICDYMFEVSVCLLLRVSWYQPFIVEDRGET
        +G    +HDG CAICLNKIALQETAL RG EHAYC                                   + D+MFE SVCLLLR SWY P IVEDR ET
Subjt:  EGRDLRTHDGACAICLNKIALQETALPRGFEHAYC-----------------------------------ICDYMFEVSVCLLLRVSWYQPFIVEDRGET

Query:  YPSYDDRVEYYPYDDD-----ESYLG
           Y+D  EYYPY+DD     E+YLG
Subjt:  YPSYDDRVEYYPYDDD-----ESYLG

TrEMBL top hitse value%identityAlignment
A0A0A0KK15 RING-type domain-containing protein3.5e-1948.33Show/hide
Query:  EGRDLRTHDGACAICLNKIALQETALPRGFEHAYC-----------------------------------ICDYMFEVSVCLLLRVSWYQPFIVEDRGET
        +G    +HDGACAICLNKIALQETAL RG EHAYC                                   I DYMFE SVCLLLR SWY+P I+E+R ET
Subjt:  EGRDLRTHDGACAICLNKIALQETALPRGFEHAYC-----------------------------------ICDYMFEVSVCLLLRVSWYQPFIVEDRGET

Query:  YPSYDDRVEYYPYDDDESYL
        Y   +D  +YYPY+DD+  L
Subjt:  YPSYDDRVEYYPYDDDESYL

A0A6J1DGD3 uncharacterized protein LOC1110206076.4e-2150Show/hide
Query:  EGRDLRTHDGACAICLNKIALQETALPRGFEHAYCIC-----------------------------------DYMFEVSVCLLLRVSWYQPFIVEDRGET
        +G    +HDGACAICLNKIALQETAL RG EHAYC+                                    DYMFE SVCLLLR SWY P +VEDR ET
Subjt:  EGRDLRTHDGACAICLNKIALQETALPRGFEHAYCIC-----------------------------------DYMFEVSVCLLLRVSWYQPFIVEDRGET

Query:  YPSYDDRVEYYPYDDD-----ESYLG
           YDD  EYYPY+DD     E YLG
Subjt:  YPSYDDRVEYYPYDDD-----ESYLG

A0A6J1FXD4 uncharacterized protein LOC1114484311.2e-1948.41Show/hide
Query:  EGRDLRTHDGACAICLNKIALQETALPRGFEHAYC-----------------------------------ICDYMFEVSVCLLLRVSWYQPFIVEDRGET
        +G    +HDGACAICLNKI+L ETAL RG EHAYC                                   I DYMFE SVCLLLR SWY+P IV+DR ET
Subjt:  EGRDLRTHDGACAICLNKIALQETALPRGFEHAYC-----------------------------------ICDYMFEVSVCLLLRVSWYQPFIVEDRGET

Query:  YPSYDDRVEYYPYDD-----DESYLG
           YDD  EYYPY+D     +E+YLG
Subjt:  YPSYDDRVEYYPYDD-----DESYLG

A0A6J1H396 uncharacterized protein LOC1114596092.0e-1948.41Show/hide
Query:  EGRDLRTHDGACAICLNKIALQETALPRGFEHAYC-----------------------------------ICDYMFEVSVCLLLRVSWYQPFIVEDRGET
        +G    +HDG CAICLNKIALQETAL RG EHAYC                                   + D+MFE SVCLLLR SWY P IVEDR ET
Subjt:  EGRDLRTHDGACAICLNKIALQETALPRGFEHAYC-----------------------------------ICDYMFEVSVCLLLRVSWYQPFIVEDRGET

Query:  YPSYDDRVEYYPYDDD-----ESYLG
           Y+D  EYYPY+DD     E+YLG
Subjt:  YPSYDDRVEYYPYDDD-----ESYLG

A0A6J1K158 uncharacterized protein LOC1114907673.5e-1950Show/hide
Query:  THDGACAICLNKIALQETALPRGFEHAYC-----------------------------------ICDYMFEVSVCLLLRVSWYQPFIVEDRGETYPSYDD
        +HDG CAICLNKIALQETAL RG EHAYC                                   + D+MFE SVCLLLR SWY P IVEDR ET   Y+D
Subjt:  THDGACAICLNKIALQETALPRGFEHAYC-----------------------------------ICDYMFEVSVCLLLRVSWYQPFIVEDRGETYPSYDD

Query:  RVEYYPYDDD-----ESYLG
          EYYPY+DD     E+YLG
Subjt:  RVEYYPYDDD-----ESYLG

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT5G12310.1 RING/U-box superfamily protein1.2e-1135.9Show/hide
Query:  HDGACAICLNKIALQETALPRGFEHAYCIC-----------------------------------DYMFEVSVCLLLRVSWYQPF----IVEDRGETYPS
        H G CAICL+ I LQETA+ +G EHAYC+                                    D+MFE SVCLLLR SW+QP      V D       
Subjt:  HDGACAICLNKIALQETALPRGFEHAYCIC-----------------------------------DYMFEVSVCLLLRVSWYQPF----IVEDRGETYPS

Query:  YDDRVEYYPYDDDESYL
        +D   EY   D+D+  L
Subjt:  YDDRVEYYPYDDDESYL

AT5G19430.1 RING/U-box superfamily protein7.0e-1234.21Show/hide
Query:  HDGACAICLNKIALQETALPRGFEHAYCIC-----------------------------------DYMFEVSVCLLLRVSWYQPF-IVEDRGETYPSYDD
        H G CAICL++I LQETA+ +G EH YC+                                    D++FE SVCLLLR SW+ P  +VE    ++  +DD
Subjt:  HDGACAICLNKIALQETALPRGFEHAYCIC-----------------------------------DYMFEVSVCLLLRVSWYQPF-IVEDRGETYPSYDD

Query:  RVEYYPYDDDESYL
            Y Y+D++  L
Subjt:  RVEYYPYDDDESYL

AT5G19430.2 RING/U-box superfamily protein7.0e-1234.21Show/hide
Query:  HDGACAICLNKIALQETALPRGFEHAYCIC-----------------------------------DYMFEVSVCLLLRVSWYQPF-IVEDRGETYPSYDD
        H G CAICL++I LQETA+ +G EH YC+                                    D++FE SVCLLLR SW+ P  +VE    ++  +DD
Subjt:  HDGACAICLNKIALQETALPRGFEHAYCIC-----------------------------------DYMFEVSVCLLLRVSWYQPF-IVEDRGETYPSYDD

Query:  RVEYYPYDDDESYL
            Y Y+D++  L
Subjt:  RVEYYPYDDDESYL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCTGAGTTGTATATAATAAGCTTTGTGCCTCATTATGGGAATGGGAAAGAAGAAGGTAGAGATTTAAGGACTCATGATGGGGCTTGTGCTATTTGCTTAAACAAGAT
AGCTCTTCAAGAAACTGCCTTACCGAGAGGTTTCGAGCACGCCTATTGCATATGTGACTATATGTTTGAGGTGAGTGTATGCTTGCTCCTAAGAGTTTCATGGTATCAAC
CATTCATTGTTGAGGATCGTGGGGAGACATATCCTTCTTATGATGATCGTGTGGAGTACTATCCTTATGATGACGATGAATCTTACTTGGGCCATCAAGTCTTTGTATTG
GAAATCGAAGGTGGATTTGTTAGACTTTGGAGGAGCTAA
mRNA sequenceShow/hide mRNA sequence
ATGTCTGAGTTGTATATAATAAGCTTTGTGCCTCATTATGGGAATGGGAAAGAAGAAGGTAGAGATTTAAGGACTCATGATGGGGCTTGTGCTATTTGCTTAAACAAGAT
AGCTCTTCAAGAAACTGCCTTACCGAGAGGTTTCGAGCACGCCTATTGCATATGTGACTATATGTTTGAGGTGAGTGTATGCTTGCTCCTAAGAGTTTCATGGTATCAAC
CATTCATTGTTGAGGATCGTGGGGAGACATATCCTTCTTATGATGATCGTGTGGAGTACTATCCTTATGATGACGATGAATCTTACTTGGGCCATCAAGTCTTTGTATTG
GAAATCGAAGGTGGATTTGTTAGACTTTGGAGGAGCTAA
Protein sequenceShow/hide protein sequence
MSELYIISFVPHYGNGKEEGRDLRTHDGACAICLNKIALQETALPRGFEHAYCICDYMFEVSVCLLLRVSWYQPFIVEDRGETYPSYDDRVEYYPYDDDESYLGHQVFVL
EIEGGFVRLWRS