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Sed0017079 (gene) of Chayote v1 genome

Gene IDSed0017079
OrganismSechium edule (Chayote v1)
DescriptionRNA-directed RNA polymerase
Genome locationLG09:35339574..35341669
RNA-Seq ExpressionSed0017079
SyntenySed0017079
Gene Ontology termsGO:0006414 - translational elongation (biological process)
GO:0003746 - translation elongation factor activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
GAY40670.1 hypothetical protein CUMW_053760 [Citrus unshiu]2.4e-1883.02Show/hide
Query:  GWFRSLLVSPLKKLWDRLHSPRRNRKGIYILYKDVKSCPCEDVQMLWSILVES
        GW  SL+VSPLKKLWDRLHS  R R+G+YILYKDVKSCPCEDVQ+LWSILVES
Subjt:  GWFRSLLVSPLKKLWDRLHSPRRNRKGIYILYKDVKSCPCEDVQMLWSILVES

KAG6575915.1 hypothetical protein SDJN03_26554, partial [Cucurbita argyrosperma subsp. sororia]1.1e-1858Show/hide
Query:  MGWFRSLLVSPLKKLWDRLHSPRRNR------------------------------------KGIYILYKDVKSCPCEDVQMLWSILVE--SSSPNPPSP
        MGWFRSLLVSPLKKLW RLHSP RNR                                    KGIYILYKDVKSCPCEDVQMLWSILVE  SSS +PPSP
Subjt:  MGWFRSLLVSPLKKLWDRLHSPRRNR------------------------------------KGIYILYKDVKSCPCEDVQMLWSILVE--SSSPNPPSP

KDO68697.1 hypothetical protein CISIN_1g035399mg [Citrus sinensis]2.4e-1883.02Show/hide
Query:  GWFRSLLVSPLKKLWDRLHSPRRNRKGIYILYKDVKSCPCEDVQMLWSILVES
        GW  SL+VSPLKKLWDRLHS  R R+G+YILYKDVKSCPCEDVQ+LWSILVES
Subjt:  GWFRSLLVSPLKKLWDRLHSPRRNRKGIYILYKDVKSCPCEDVQMLWSILVES

KGN44804.1 hypothetical protein Csa_015628 [Cucumis sativus]1.4e-2182.81Show/hide
Query:  MGWFRSLLVSPLKKLWDRLHSPRR-NRKGIYILYKDVKSCPCEDVQMLWSILVESSSPNPPSPL
        MGWF+S L+SP KKLWDRLHSP + NRKGIYILYKDVKSCPCEDVQMLWSILV+S+SP P SPL
Subjt:  MGWFRSLLVSPLKKLWDRLHSPRR-NRKGIYILYKDVKSCPCEDVQMLWSILVESSSPNPPSPL

RXI05532.1 hypothetical protein DVH24_017574 [Malus domestica]1.4e-1879.03Show/hide
Query:  MGWFRSLLVSPLKKLWDRLHSPRRNRKGIYILYKDVKSCPCEDVQMLWSILVESSS-PNPPS
        MGW RS LVSPLKKLWDRLHS  R RKGIYILYKDV+SCPCEDV +LWSILV+S S P PP+
Subjt:  MGWFRSLLVSPLKKLWDRLHSPRRNRKGIYILYKDVKSCPCEDVQMLWSILVESSS-PNPPS

TrEMBL top hitse value%identityAlignment
A0A067FZ56 Uncharacterized protein1.2e-1883.02Show/hide
Query:  GWFRSLLVSPLKKLWDRLHSPRRNRKGIYILYKDVKSCPCEDVQMLWSILVES
        GW  SL+VSPLKKLWDRLHS  R R+G+YILYKDVKSCPCEDVQ+LWSILVES
Subjt:  GWFRSLLVSPLKKLWDRLHSPRRNRKGIYILYKDVKSCPCEDVQMLWSILVES

A0A0A0K7C3 Uncharacterized protein6.6e-2282.81Show/hide
Query:  MGWFRSLLVSPLKKLWDRLHSPRR-NRKGIYILYKDVKSCPCEDVQMLWSILVESSSPNPPSPL
        MGWF+S L+SP KKLWDRLHSP + NRKGIYILYKDVKSCPCEDVQMLWSILV+S+SP P SPL
Subjt:  MGWFRSLLVSPLKKLWDRLHSPRR-NRKGIYILYKDVKSCPCEDVQMLWSILVESSSPNPPSPL

A0A2H5NKH5 Uncharacterized protein1.2e-1883.02Show/hide
Query:  GWFRSLLVSPLKKLWDRLHSPRRNRKGIYILYKDVKSCPCEDVQMLWSILVES
        GW  SL+VSPLKKLWDRLHS  R R+G+YILYKDVKSCPCEDVQ+LWSILVES
Subjt:  GWFRSLLVSPLKKLWDRLHSPRRNRKGIYILYKDVKSCPCEDVQMLWSILVES

A0A498KIY5 Uncharacterized protein6.9e-1979.03Show/hide
Query:  MGWFRSLLVSPLKKLWDRLHSPRRNRKGIYILYKDVKSCPCEDVQMLWSILVESSS-PNPPS
        MGW RS LVSPLKKLWDRLHS  R RKGIYILYKDV+SCPCEDV +LWSILV+S S P PP+
Subjt:  MGWFRSLLVSPLKKLWDRLHSPRRNRKGIYILYKDVKSCPCEDVQMLWSILVESSS-PNPPS

W9QVP0 Uncharacterized protein2.6e-1882.14Show/hide
Query:  MGWFRSLLVSPLKKLWDRLHSPRRNRKGIYILYKDVKSCPCEDVQMLWSILVESSS
        MGW RS LVSPLKK+WDRLHS  R R+GIYILYKDVKSCPCEDVQ+LWSILVES +
Subjt:  MGWFRSLLVSPLKKLWDRLHSPRRNRKGIYILYKDVKSCPCEDVQMLWSILVESSS

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGATGGTTTAGATCTCTCCTCGTTTCGCCATTGAAGAAGCTTTGGGATCGTCTTCACTCTCCCCGTAGAAATCGCAAAGGCATCTACATTCTGTACAAGGATGTGAA
GTCTTGCCCATGTGAAGATGTGCAAATGCTTTGGTCCATCCTCGTCGAGTCGAGTTCTCCTAATCCGCCATCGCCTCTGTGA
mRNA sequenceShow/hide mRNA sequence
ATGGGATGGTTTAGATCTCTCCTCGTTTCGCCATTGAAGAAGCTTTGGGATCGTCTTCACTCTCCCCGTAGAAATCGCAAAGGCATCTACATTCTGTACAAGGATGTGAA
GTCTTGCCCATGTGAAGATGTGCAAATGCTTTGGTCCATCCTCGTCGAGTCGAGTTCTCCTAATCCGCCATCGCCTCTGTGA
Protein sequenceShow/hide protein sequence
MGWFRSLLVSPLKKLWDRLHSPRRNRKGIYILYKDVKSCPCEDVQMLWSILVESSSPNPPSPL