| GenBank top hits | e value | %identity | Alignment |
|---|
| XP_016902883.1 PREDICTED: RNA polymerase sigma factor sigF, chloroplastic isoform X1 [Cucumis melo] | 6.0e-246 | 84.42 | Show/hide |
Query: VSMLHEQATPARYFSAAFLSQEQHQECRPQSQTLKDDRTSQMTLDRKLTERSVSIDEASRSGHDHLIWELKHQAVEWSNLLSSWPSLEMRECKISSVEKQ
V M EQA+PARYFS +FLSQEQH ECRPQSQ LKDDRTSQMTLDR+L ERSV IDE SRS HDHLIWELKHQAVEW +LLSSWPSL+M E KISS EK+
Subjt: VSMLHEQATPARYFSAAFLSQEQHQECRPQSQTLKDDRTSQMTLDRKLTERSVSIDEASRSGHDHLIWELKHQAVEWSNLLSSWPSLEMRECKISSVEKQ
Query: SNNPSREMLAEDEPENVIALAKKALLASKQAASFVDKSGFVGTNQDSFSSEDYLSKESRTVKSTKLQDRRSKKRRVPKHVTTIHEAYNYKGKDTRRKASE
S N EML +DEPENVIALAKKAL ASKQAA VD+S VGT+ D S +D LSKE RTV+ST+LQDRRSKKR+VPKHVTTIHE N++GKD+RRK SE
Subjt: SNNPSREMLAEDEPENVIALAKKALLASKQAASFVDKSGFVGTNQDSFSSEDYLSKESRTVKSTKLQDRRSKKRRVPKHVTTIHEAYNYKGKDTRRKASE
Query: HFDPNDPLRLFLWGPETKKLLTPQEESELIVQIQDLMILDNVKARLQSQFGREPTLVEWAEALGLTCQRLQSQLHCFRVSREKLINANLRMVVHIAKQYQ
FDPNDPLRLFLWGPETKKLLT QEES+LIVQIQDLMILDNVKA+LQSQFGREPTLVEWAEALG+TCQ+LQSQLH FR SREKLINANLRMVVHIAKQY
Subjt: HFDPNDPLRLFLWGPETKKLLTPQEESELIVQIQDLMILDNVKARLQSQFGREPTLVEWAEALGLTCQRLQSQLHCFRVSREKLINANLRMVVHIAKQYQ
Query: GRGLSFQDLLQEGSLGLMKSVEKFKPQAGCRFATYAYWWIRQSIRKAIFEHSRTIRLPENVFGLLGKVTEAKNYFVREGNYKPSKEELASHVGITVERLD
GRGLS DLLQEGSLGLMKSVEKFKPQAGCRFA+YAYWWIR SI KAIF+HSRTIRLPENV+ LLGKVTEAKNY VR GNYKPSKEELA+HVGITVERLD
Subjt: GRGLSFQDLLQEGSLGLMKSVEKFKPQAGCRFATYAYWWIRQSIRKAIFEHSRTIRLPENVFGLLGKVTEAKNYFVREGNYKPSKEELASHVGITVERLD
Query: KLMLMSRIPRSLQQPVWADQATTFQEITADSEVDTPDISVERELMRRHVRNLLSVLNPKERRIIRLRFGIEDGQEKTLLEIGNVFGLSKERVRQLESRAL
KLM MSRIPRSLQQPVWADQ TT+QEITADSEVDTPD+SVERELMRRH+RNLLS+L+PKERRIIRLRFGIEDG+EKTLLEIGN+FGLSKERVRQLE+RAL
Subjt: KLMLMSRIPRSLQQPVWADQATTFQEITADSEVDTPDISVERELMRRHVRNLLSVLNPKERRIIRLRFGIEDGQEKTLLEIGNVFGLSKERVRQLESRAL
Query: YKLKRCCNAQGLDAYADLLT
YKLKRCCN+QGL AYADLLT
Subjt: YKLKRCCNAQGLDAYADLLT
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| XP_016902885.1 PREDICTED: RNA polymerase sigma factor sigF, chloroplastic isoform X2 [Cucumis melo] | 6.0e-246 | 84.42 | Show/hide |
Query: VSMLHEQATPARYFSAAFLSQEQHQECRPQSQTLKDDRTSQMTLDRKLTERSVSIDEASRSGHDHLIWELKHQAVEWSNLLSSWPSLEMRECKISSVEKQ
V M EQA+PARYFS +FLSQEQH ECRPQSQ LKDDRTSQMTLDR+L ERSV IDE SRS HDHLIWELKHQAVEW +LLSSWPSL+M E KISS EK+
Subjt: VSMLHEQATPARYFSAAFLSQEQHQECRPQSQTLKDDRTSQMTLDRKLTERSVSIDEASRSGHDHLIWELKHQAVEWSNLLSSWPSLEMRECKISSVEKQ
Query: SNNPSREMLAEDEPENVIALAKKALLASKQAASFVDKSGFVGTNQDSFSSEDYLSKESRTVKSTKLQDRRSKKRRVPKHVTTIHEAYNYKGKDTRRKASE
S N EML +DEPENVIALAKKAL ASKQAA VD+S VGT+ D S +D LSKE RTV+ST+LQDRRSKKR+VPKHVTTIHE N++GKD+RRK SE
Subjt: SNNPSREMLAEDEPENVIALAKKALLASKQAASFVDKSGFVGTNQDSFSSEDYLSKESRTVKSTKLQDRRSKKRRVPKHVTTIHEAYNYKGKDTRRKASE
Query: HFDPNDPLRLFLWGPETKKLLTPQEESELIVQIQDLMILDNVKARLQSQFGREPTLVEWAEALGLTCQRLQSQLHCFRVSREKLINANLRMVVHIAKQYQ
FDPNDPLRLFLWGPETKKLLT QEES+LIVQIQDLMILDNVKA+LQSQFGREPTLVEWAEALG+TCQ+LQSQLH FR SREKLINANLRMVVHIAKQY
Subjt: HFDPNDPLRLFLWGPETKKLLTPQEESELIVQIQDLMILDNVKARLQSQFGREPTLVEWAEALGLTCQRLQSQLHCFRVSREKLINANLRMVVHIAKQYQ
Query: GRGLSFQDLLQEGSLGLMKSVEKFKPQAGCRFATYAYWWIRQSIRKAIFEHSRTIRLPENVFGLLGKVTEAKNYFVREGNYKPSKEELASHVGITVERLD
GRGLS DLLQEGSLGLMKSVEKFKPQAGCRFA+YAYWWIR SI KAIF+HSRTIRLPENV+ LLGKVTEAKNY VR GNYKPSKEELA+HVGITVERLD
Subjt: GRGLSFQDLLQEGSLGLMKSVEKFKPQAGCRFATYAYWWIRQSIRKAIFEHSRTIRLPENVFGLLGKVTEAKNYFVREGNYKPSKEELASHVGITVERLD
Query: KLMLMSRIPRSLQQPVWADQATTFQEITADSEVDTPDISVERELMRRHVRNLLSVLNPKERRIIRLRFGIEDGQEKTLLEIGNVFGLSKERVRQLESRAL
KLM MSRIPRSLQQPVWADQ TT+QEITADSEVDTPD+SVERELMRRH+RNLLS+L+PKERRIIRLRFGIEDG+EKTLLEIGN+FGLSKERVRQLE+RAL
Subjt: KLMLMSRIPRSLQQPVWADQATTFQEITADSEVDTPDISVERELMRRHVRNLLSVLNPKERRIIRLRFGIEDGQEKTLLEIGNVFGLSKERVRQLESRAL
Query: YKLKRCCNAQGLDAYADLLT
YKLKRCCN+QGL AYADLLT
Subjt: YKLKRCCNAQGLDAYADLLT
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| XP_022143971.1 RNA polymerase sigma factor sigF, chloroplastic [Momordica charantia] | 5.6e-252 | 85.88 | Show/hide |
Query: VSMLHEQATPARYFSAAFLSQEQHQECRPQSQTLKDDRTSQMTLDRKLTERSVSIDEASRSGHDHLIWELKHQAVEWSNLLSSWPSLEMRECKISSVEKQ
V MLH+QATPARYFS +F+ QEQH ECRPQSQ LKDD+TSQMTLDR+L ERSVSIDE SR GHDHL+WELKHQA EW LLSSWPSL+M E KISSVEKQ
Subjt: VSMLHEQATPARYFSAAFLSQEQHQECRPQSQTLKDDRTSQMTLDRKLTERSVSIDEASRSGHDHLIWELKHQAVEWSNLLSSWPSLEMRECKISSVEKQ
Query: SNNPS-REMLAEDEPENVIALAKKALLASKQAASFVDKSGFVGTNQD---SFSSEDYLSKESRTVKSTKLQDRRSKKRRVPKHVTTIHEAYNYKGKDTRR
NN S RE+L EDEPE+VIALAKKAL ASKQAAS V++S VGTN D S SSED L KE VKST+LQDRRSK+RRVPKHVTTIHE YN +GKDTRR
Subjt: SNNPS-REMLAEDEPENVIALAKKALLASKQAASFVDKSGFVGTNQD---SFSSEDYLSKESRTVKSTKLQDRRSKKRRVPKHVTTIHEAYNYKGKDTRR
Query: KASEHFDPNDPLRLFLWGPETKKLLTPQEESELIVQIQDLMILDNVKARLQSQFGREPTLVEWAEALGLTCQRLQSQLHCFRVSREKLINANLRMVVHIA
K +E+FDPNDPLRLFLWGPETKKLLT QEESELIVQIQDLMIL+NVKARLQSQFGREPTLVEWAEA+G+TCQ LQSQLHCFRVSREKLINANLRMVVHIA
Subjt: KASEHFDPNDPLRLFLWGPETKKLLTPQEESELIVQIQDLMILDNVKARLQSQFGREPTLVEWAEALGLTCQRLQSQLHCFRVSREKLINANLRMVVHIA
Query: KQYQGRGLSFQDLLQEGSLGLMKSVEKFKPQAGCRFATYAYWWIRQSIRKAIFEHSRTIRLPENVFGLLGKVTEAKNYFVREGNYKPSKEELASHVGITV
K+YQGRGLS DLLQEGSLGLMKSVEKFKPQAGCRFATYAYWWIRQSIRKAIFEHSRTIRLPENV+GLLGKVTEAKN+FVREGNYKPSKEELA+HVGITV
Subjt: KQYQGRGLSFQDLLQEGSLGLMKSVEKFKPQAGCRFATYAYWWIRQSIRKAIFEHSRTIRLPENVFGLLGKVTEAKNYFVREGNYKPSKEELASHVGITV
Query: ERLDKLMLMSRIPRSLQQPVWADQATTFQEITADSEVDTPDISVERELMRRHVRNLLSVLNPKERRIIRLRFGIEDGQEKTLLEIGNVFGLSKERVRQLE
ERLDKL+ MSRIPRSLQQPVWADQ TTFQEITADSEVDTPD+SVERELMRRH+RNLLS+L+PKERRIIRLR+GIEDG+EKTLLEIGN+FGLSKERVRQLE
Subjt: ERLDKLMLMSRIPRSLQQPVWADQATTFQEITADSEVDTPDISVERELMRRHVRNLLSVLNPKERRIIRLRFGIEDGQEKTLLEIGNVFGLSKERVRQLE
Query: SRALYKLKRCCNAQGLDAYADLLT
+RALYKLKRCCN+QGL AYADLLT
Subjt: SRALYKLKRCCNAQGLDAYADLLT
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| XP_031742499.1 RNA polymerase sigma factor sigF, chloroplastic [Cucumis sativus] | 6.0e-254 | 81.67 | Show/hide |
Query: MEAGLNLLSSSSPFNSRCHLRSFIHPSCS-----SSSLGNVFVSMLHEQATPARYFSAAFLSQEQHQECRPQSQTLKDDRTSQMTLDRKLTERSVSIDEA
MEAGLNLLSSSSPF SRCH RSF+ PSCS SSS + V M EQA+PARYFS +FLSQEQH ECRPQSQ LKDDR+SQMTL+R+L ERSV IDE
Subjt: MEAGLNLLSSSSPFNSRCHLRSFIHPSCS-----SSSLGNVFVSMLHEQATPARYFSAAFLSQEQHQECRPQSQTLKDDRTSQMTLDRKLTERSVSIDEA
Query: SRSGHDHLIWELKHQAVEWSNLLSSWPSLEMRECKISSVEKQSNNPSREMLAEDEPENVIALAKKALLASKQAASFVDKSGFVGTNQDSFSSEDYLSKES
SR HDHLIWELKHQAVEW LLSSWP ++M E KISS+EK+S N + EML +DEPENVIALAKKAL ASKQAA VD++ VGT+ D S +D LSKE
Subjt: SRSGHDHLIWELKHQAVEWSNLLSSWPSLEMRECKISSVEKQSNNPSREMLAEDEPENVIALAKKALLASKQAASFVDKSGFVGTNQDSFSSEDYLSKES
Query: RTVKSTKLQDRRSKKRRVPKHVTTIHEAYNYKGKDTRRKASEHFDPNDPLRLFLWGPETKKLLTPQEESELIVQIQDLMILDNVKARLQSQFGREPTLVE
RTV+ST+LQDRRSKKR+VPKHVTTI E N++GKD+RRK SE FDPNDPLRLFLWGPETKKLLT QEESELIVQIQDLMILDNVKARLQSQF REPTLVE
Subjt: RTVKSTKLQDRRSKKRRVPKHVTTIHEAYNYKGKDTRRKASEHFDPNDPLRLFLWGPETKKLLTPQEESELIVQIQDLMILDNVKARLQSQFGREPTLVE
Query: WAEALGLTCQRLQSQLHCFRVSREKLINANLRMVVHIAKQYQGRGLSFQDLLQEGSLGLMKSVEKFKPQAGCRFATYAYWWIRQSIRKAIFEHSRTIRLP
WAEALG+TCQ LQSQLH F+ SREKLINANLRMVVHIAKQYQGRGLS DLLQ GSLGLMKSVEKFKPQAGCRF +YAYWWIR SI KAIF+HSRTIRLP
Subjt: WAEALGLTCQRLQSQLHCFRVSREKLINANLRMVVHIAKQYQGRGLSFQDLLQEGSLGLMKSVEKFKPQAGCRFATYAYWWIRQSIRKAIFEHSRTIRLP
Query: ENVFGLLGKVTEAKNYFVREGNYKPSKEELASHVGITVERLDKLMLMSRIPRSLQQPVWADQATTFQEITADSEVDTPDISVERELMRRHVRNLLSVLNP
ENV+ LLGKVTEAKNYFVR GNYKPSKEELA+ VGITVER DKLM MSRIPRSLQQPVWADQ TTFQEITADSEVDTPD+SVERELMRRH+RNLLS+L+P
Subjt: ENVFGLLGKVTEAKNYFVREGNYKPSKEELASHVGITVERLDKLMLMSRIPRSLQQPVWADQATTFQEITADSEVDTPDISVERELMRRHVRNLLSVLNP
Query: KERRIIRLRFGIEDGQEKTLLEIGNVFGLSKERVRQLESRALYKLKRCCNAQGLDAYADLLT
KERRIIRLRFGIEDG+EKTLLEIGN+FGLSKERVRQLE+RALYKLKRCCN+QGL AYADLLT
Subjt: KERRIIRLRFGIEDGQEKTLLEIGNVFGLSKERVRQLESRALYKLKRCCNAQGLDAYADLLT
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| XP_038882876.1 RNA polymerase sigma factor sigF, chloroplastic [Benincasa hispida] | 6.4e-264 | 85.64 | Show/hide |
Query: MEAGLNLLSSSSPFNSRCHLRSFIHPSCSSSSLGNVFVSMLHEQATPARYFSAAFLSQEQHQECRPQSQTLKDDRTSQMTLDRKLTERSVSIDEASRSGH
MEAGLNLLSSSS F SRCH RSF+HPSCSSSS + VSM HEQA PARYFS +FLSQEQH ECRPQSQ LKDDRTSQ TLDR+L ERSVSIDE +RS H
Subjt: MEAGLNLLSSSSPFNSRCHLRSFIHPSCSSSSLGNVFVSMLHEQATPARYFSAAFLSQEQHQECRPQSQTLKDDRTSQMTLDRKLTERSVSIDEASRSGH
Query: DHLIWELKHQAVEWSNLLSSWPSLEMRECKISSVEKQSNNPSREMLAEDEPENVIALAKKALLASKQAASFVDKSGFVGTNQDSFSSEDYLSKESRTVKS
DHLIWE KHQAVEW LLSSWPSL+M E KISSVEKQS N EML +DEPENVIALAKKAL ASKQAAS VD+S VGTN D S +D LSKE RTV+S
Subjt: DHLIWELKHQAVEWSNLLSSWPSLEMRECKISSVEKQSNNPSREMLAEDEPENVIALAKKALLASKQAASFVDKSGFVGTNQDSFSSEDYLSKESRTVKS
Query: TKLQDRRSKKRRVPKHVTTIHEAYNYKGKDTRRKASEHFDPNDPLRLFLWGPETKKLLTPQEESELIVQIQDLMILDNVKARLQSQFGREPTLVEWAEAL
T+LQDRRSKKR+VPKHVTTIHE N KGKD+RRK E+FDPNDPLRLFLWGPETKKLLT +EESELIVQIQDLMILDNVKARLQSQFGREPTLVEWAEAL
Subjt: TKLQDRRSKKRRVPKHVTTIHEAYNYKGKDTRRKASEHFDPNDPLRLFLWGPETKKLLTPQEESELIVQIQDLMILDNVKARLQSQFGREPTLVEWAEAL
Query: GLTCQRLQSQLHCFRVSREKLINANLRMVVHIAKQYQGRGLSFQDLLQEGSLGLMKSVEKFKPQAGCRFATYAYWWIRQSIRKAIFEHSRTIRLPENVFG
GLTCQRLQSQL FR+SREKLINANLRMVVHIAKQYQGRGLS QDLLQEGSLGLMKSVEKFKPQAGCRFATYAYWWIRQSIRKAIFEHSRTIRLPENV+G
Subjt: GLTCQRLQSQLHCFRVSREKLINANLRMVVHIAKQYQGRGLSFQDLLQEGSLGLMKSVEKFKPQAGCRFATYAYWWIRQSIRKAIFEHSRTIRLPENVFG
Query: LLGKVTEAKNYFVREGNYKPSKEELASHVGITVERLDKLMLMSRIPRSLQQPVWADQATTFQEITADSEVDTPDISVERELMRRHVRNLLSVLNPKERRI
LLGKVTEAKNYFVR GNYKPSKEELA+ VGITVERLDKL+ MSRIPRSLQQPVW DQ TTFQEITADSE+DTPD+SVERELMRRH+RNLLS+L+PKERRI
Subjt: LLGKVTEAKNYFVREGNYKPSKEELASHVGITVERLDKLMLMSRIPRSLQQPVWADQATTFQEITADSEVDTPDISVERELMRRHVRNLLSVLNPKERRI
Query: IRLRFGIEDGQEKTLLEIGNVFGLSKERVRQLESRALYKLKRCCNAQGLDAYADLLT
IRLRFGIEDG+EKTLLEIGN+FGLSKERVRQLE+RALYKLKRC N+QGL AYADLLT
Subjt: IRLRFGIEDGQEKTLLEIGNVFGLSKERVRQLESRALYKLKRCCNAQGLDAYADLLT
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| TrEMBL top hits | e value | %identity | Alignment |
|---|
| A0A0A0KEQ6 RNA polymerase sigma factor | 2.9e-254 | 81.67 | Show/hide |
Query: MEAGLNLLSSSSPFNSRCHLRSFIHPSCS-----SSSLGNVFVSMLHEQATPARYFSAAFLSQEQHQECRPQSQTLKDDRTSQMTLDRKLTERSVSIDEA
MEAGLNLLSSSSPF SRCH RSF+ PSCS SSS + V M EQA+PARYFS +FLSQEQH ECRPQSQ LKDDR+SQMTL+R+L ERSV IDE
Subjt: MEAGLNLLSSSSPFNSRCHLRSFIHPSCS-----SSSLGNVFVSMLHEQATPARYFSAAFLSQEQHQECRPQSQTLKDDRTSQMTLDRKLTERSVSIDEA
Query: SRSGHDHLIWELKHQAVEWSNLLSSWPSLEMRECKISSVEKQSNNPSREMLAEDEPENVIALAKKALLASKQAASFVDKSGFVGTNQDSFSSEDYLSKES
SR HDHLIWELKHQAVEW LLSSWP ++M E KISS+EK+S N + EML +DEPENVIALAKKAL ASKQAA VD++ VGT+ D S +D LSKE
Subjt: SRSGHDHLIWELKHQAVEWSNLLSSWPSLEMRECKISSVEKQSNNPSREMLAEDEPENVIALAKKALLASKQAASFVDKSGFVGTNQDSFSSEDYLSKES
Query: RTVKSTKLQDRRSKKRRVPKHVTTIHEAYNYKGKDTRRKASEHFDPNDPLRLFLWGPETKKLLTPQEESELIVQIQDLMILDNVKARLQSQFGREPTLVE
RTV+ST+LQDRRSKKR+VPKHVTTI E N++GKD+RRK SE FDPNDPLRLFLWGPETKKLLT QEESELIVQIQDLMILDNVKARLQSQF REPTLVE
Subjt: RTVKSTKLQDRRSKKRRVPKHVTTIHEAYNYKGKDTRRKASEHFDPNDPLRLFLWGPETKKLLTPQEESELIVQIQDLMILDNVKARLQSQFGREPTLVE
Query: WAEALGLTCQRLQSQLHCFRVSREKLINANLRMVVHIAKQYQGRGLSFQDLLQEGSLGLMKSVEKFKPQAGCRFATYAYWWIRQSIRKAIFEHSRTIRLP
WAEALG+TCQ LQSQLH F+ SREKLINANLRMVVHIAKQYQGRGLS DLLQ GSLGLMKSVEKFKPQAGCRF +YAYWWIR SI KAIF+HSRTIRLP
Subjt: WAEALGLTCQRLQSQLHCFRVSREKLINANLRMVVHIAKQYQGRGLSFQDLLQEGSLGLMKSVEKFKPQAGCRFATYAYWWIRQSIRKAIFEHSRTIRLP
Query: ENVFGLLGKVTEAKNYFVREGNYKPSKEELASHVGITVERLDKLMLMSRIPRSLQQPVWADQATTFQEITADSEVDTPDISVERELMRRHVRNLLSVLNP
ENV+ LLGKVTEAKNYFVR GNYKPSKEELA+ VGITVER DKLM MSRIPRSLQQPVWADQ TTFQEITADSEVDTPD+SVERELMRRH+RNLLS+L+P
Subjt: ENVFGLLGKVTEAKNYFVREGNYKPSKEELASHVGITVERLDKLMLMSRIPRSLQQPVWADQATTFQEITADSEVDTPDISVERELMRRHVRNLLSVLNP
Query: KERRIIRLRFGIEDGQEKTLLEIGNVFGLSKERVRQLESRALYKLKRCCNAQGLDAYADLLT
KERRIIRLRFGIEDG+EKTLLEIGN+FGLSKERVRQLE+RALYKLKRCCN+QGL AYADLLT
Subjt: KERRIIRLRFGIEDGQEKTLLEIGNVFGLSKERVRQLESRALYKLKRCCNAQGLDAYADLLT
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| A0A1S4E3S8 RNA polymerase sigma factor sigF, chloroplastic isoform X1 | 2.9e-246 | 84.42 | Show/hide |
Query: VSMLHEQATPARYFSAAFLSQEQHQECRPQSQTLKDDRTSQMTLDRKLTERSVSIDEASRSGHDHLIWELKHQAVEWSNLLSSWPSLEMRECKISSVEKQ
V M EQA+PARYFS +FLSQEQH ECRPQSQ LKDDRTSQMTLDR+L ERSV IDE SRS HDHLIWELKHQAVEW +LLSSWPSL+M E KISS EK+
Subjt: VSMLHEQATPARYFSAAFLSQEQHQECRPQSQTLKDDRTSQMTLDRKLTERSVSIDEASRSGHDHLIWELKHQAVEWSNLLSSWPSLEMRECKISSVEKQ
Query: SNNPSREMLAEDEPENVIALAKKALLASKQAASFVDKSGFVGTNQDSFSSEDYLSKESRTVKSTKLQDRRSKKRRVPKHVTTIHEAYNYKGKDTRRKASE
S N EML +DEPENVIALAKKAL ASKQAA VD+S VGT+ D S +D LSKE RTV+ST+LQDRRSKKR+VPKHVTTIHE N++GKD+RRK SE
Subjt: SNNPSREMLAEDEPENVIALAKKALLASKQAASFVDKSGFVGTNQDSFSSEDYLSKESRTVKSTKLQDRRSKKRRVPKHVTTIHEAYNYKGKDTRRKASE
Query: HFDPNDPLRLFLWGPETKKLLTPQEESELIVQIQDLMILDNVKARLQSQFGREPTLVEWAEALGLTCQRLQSQLHCFRVSREKLINANLRMVVHIAKQYQ
FDPNDPLRLFLWGPETKKLLT QEES+LIVQIQDLMILDNVKA+LQSQFGREPTLVEWAEALG+TCQ+LQSQLH FR SREKLINANLRMVVHIAKQY
Subjt: HFDPNDPLRLFLWGPETKKLLTPQEESELIVQIQDLMILDNVKARLQSQFGREPTLVEWAEALGLTCQRLQSQLHCFRVSREKLINANLRMVVHIAKQYQ
Query: GRGLSFQDLLQEGSLGLMKSVEKFKPQAGCRFATYAYWWIRQSIRKAIFEHSRTIRLPENVFGLLGKVTEAKNYFVREGNYKPSKEELASHVGITVERLD
GRGLS DLLQEGSLGLMKSVEKFKPQAGCRFA+YAYWWIR SI KAIF+HSRTIRLPENV+ LLGKVTEAKNY VR GNYKPSKEELA+HVGITVERLD
Subjt: GRGLSFQDLLQEGSLGLMKSVEKFKPQAGCRFATYAYWWIRQSIRKAIFEHSRTIRLPENVFGLLGKVTEAKNYFVREGNYKPSKEELASHVGITVERLD
Query: KLMLMSRIPRSLQQPVWADQATTFQEITADSEVDTPDISVERELMRRHVRNLLSVLNPKERRIIRLRFGIEDGQEKTLLEIGNVFGLSKERVRQLESRAL
KLM MSRIPRSLQQPVWADQ TT+QEITADSEVDTPD+SVERELMRRH+RNLLS+L+PKERRIIRLRFGIEDG+EKTLLEIGN+FGLSKERVRQLE+RAL
Subjt: KLMLMSRIPRSLQQPVWADQATTFQEITADSEVDTPDISVERELMRRHVRNLLSVLNPKERRIIRLRFGIEDGQEKTLLEIGNVFGLSKERVRQLESRAL
Query: YKLKRCCNAQGLDAYADLLT
YKLKRCCN+QGL AYADLLT
Subjt: YKLKRCCNAQGLDAYADLLT
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| A0A1S4E4I4 RNA polymerase sigma factor sigF, chloroplastic isoform X2 | 2.9e-246 | 84.42 | Show/hide |
Query: VSMLHEQATPARYFSAAFLSQEQHQECRPQSQTLKDDRTSQMTLDRKLTERSVSIDEASRSGHDHLIWELKHQAVEWSNLLSSWPSLEMRECKISSVEKQ
V M EQA+PARYFS +FLSQEQH ECRPQSQ LKDDRTSQMTLDR+L ERSV IDE SRS HDHLIWELKHQAVEW +LLSSWPSL+M E KISS EK+
Subjt: VSMLHEQATPARYFSAAFLSQEQHQECRPQSQTLKDDRTSQMTLDRKLTERSVSIDEASRSGHDHLIWELKHQAVEWSNLLSSWPSLEMRECKISSVEKQ
Query: SNNPSREMLAEDEPENVIALAKKALLASKQAASFVDKSGFVGTNQDSFSSEDYLSKESRTVKSTKLQDRRSKKRRVPKHVTTIHEAYNYKGKDTRRKASE
S N EML +DEPENVIALAKKAL ASKQAA VD+S VGT+ D S +D LSKE RTV+ST+LQDRRSKKR+VPKHVTTIHE N++GKD+RRK SE
Subjt: SNNPSREMLAEDEPENVIALAKKALLASKQAASFVDKSGFVGTNQDSFSSEDYLSKESRTVKSTKLQDRRSKKRRVPKHVTTIHEAYNYKGKDTRRKASE
Query: HFDPNDPLRLFLWGPETKKLLTPQEESELIVQIQDLMILDNVKARLQSQFGREPTLVEWAEALGLTCQRLQSQLHCFRVSREKLINANLRMVVHIAKQYQ
FDPNDPLRLFLWGPETKKLLT QEES+LIVQIQDLMILDNVKA+LQSQFGREPTLVEWAEALG+TCQ+LQSQLH FR SREKLINANLRMVVHIAKQY
Subjt: HFDPNDPLRLFLWGPETKKLLTPQEESELIVQIQDLMILDNVKARLQSQFGREPTLVEWAEALGLTCQRLQSQLHCFRVSREKLINANLRMVVHIAKQYQ
Query: GRGLSFQDLLQEGSLGLMKSVEKFKPQAGCRFATYAYWWIRQSIRKAIFEHSRTIRLPENVFGLLGKVTEAKNYFVREGNYKPSKEELASHVGITVERLD
GRGLS DLLQEGSLGLMKSVEKFKPQAGCRFA+YAYWWIR SI KAIF+HSRTIRLPENV+ LLGKVTEAKNY VR GNYKPSKEELA+HVGITVERLD
Subjt: GRGLSFQDLLQEGSLGLMKSVEKFKPQAGCRFATYAYWWIRQSIRKAIFEHSRTIRLPENVFGLLGKVTEAKNYFVREGNYKPSKEELASHVGITVERLD
Query: KLMLMSRIPRSLQQPVWADQATTFQEITADSEVDTPDISVERELMRRHVRNLLSVLNPKERRIIRLRFGIEDGQEKTLLEIGNVFGLSKERVRQLESRAL
KLM MSRIPRSLQQPVWADQ TT+QEITADSEVDTPD+SVERELMRRH+RNLLS+L+PKERRIIRLRFGIEDG+EKTLLEIGN+FGLSKERVRQLE+RAL
Subjt: KLMLMSRIPRSLQQPVWADQATTFQEITADSEVDTPDISVERELMRRHVRNLLSVLNPKERRIIRLRFGIEDGQEKTLLEIGNVFGLSKERVRQLESRAL
Query: YKLKRCCNAQGLDAYADLLT
YKLKRCCN+QGL AYADLLT
Subjt: YKLKRCCNAQGLDAYADLLT
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| A0A5A7V893 RNA polymerase sigma factor sigF | 8.5e-246 | 84.23 | Show/hide |
Query: VSMLHEQATPARYFSAAFLSQEQHQECRPQSQTLKDDRTSQMTLDRKLTERSVSIDEASRSGHDHLIWELKHQAVEWSNLLSSWPSLEMRECKISSVEKQ
V M EQA+PARYFS +FLSQEQH ECRPQSQ LKDDRTSQMTLDR+L ERSV IDE SRS HDHLIWELKHQAVEW +LLSSWPSL+M E KISS EK+
Subjt: VSMLHEQATPARYFSAAFLSQEQHQECRPQSQTLKDDRTSQMTLDRKLTERSVSIDEASRSGHDHLIWELKHQAVEWSNLLSSWPSLEMRECKISSVEKQ
Query: SNNPSREMLAEDEPENVIALAKKALLASKQAASFVDKSGFVGTNQDSFSSEDYLSKESRTVKSTKLQDRRSKKRRVPKHVTTIHEAYNYKGKDTRRKASE
S N EML +DEPENVIALAKKAL ASKQAA VD+S VGT+ D S +D LSKE RTV+ST+LQ+RRSKKR+VPKHVTTIHE N++GKD+RRK SE
Subjt: SNNPSREMLAEDEPENVIALAKKALLASKQAASFVDKSGFVGTNQDSFSSEDYLSKESRTVKSTKLQDRRSKKRRVPKHVTTIHEAYNYKGKDTRRKASE
Query: HFDPNDPLRLFLWGPETKKLLTPQEESELIVQIQDLMILDNVKARLQSQFGREPTLVEWAEALGLTCQRLQSQLHCFRVSREKLINANLRMVVHIAKQYQ
FDPNDPLRLFLWGPETKKLLT QEES+LIVQIQDLMILDNVKA+LQSQFGREPTLVEWAEALG+TCQ+LQSQLH FR SREKLINANLRMVVHIAKQY
Subjt: HFDPNDPLRLFLWGPETKKLLTPQEESELIVQIQDLMILDNVKARLQSQFGREPTLVEWAEALGLTCQRLQSQLHCFRVSREKLINANLRMVVHIAKQYQ
Query: GRGLSFQDLLQEGSLGLMKSVEKFKPQAGCRFATYAYWWIRQSIRKAIFEHSRTIRLPENVFGLLGKVTEAKNYFVREGNYKPSKEELASHVGITVERLD
GRGLS DLLQEGSLGLMKSVEKFKPQAGCRFA+YAYWWIR SI KAIF+HSRTIRLPENV+ LLGKVTEAKNY VR GNYKPSKEELA+HVGITVERLD
Subjt: GRGLSFQDLLQEGSLGLMKSVEKFKPQAGCRFATYAYWWIRQSIRKAIFEHSRTIRLPENVFGLLGKVTEAKNYFVREGNYKPSKEELASHVGITVERLD
Query: KLMLMSRIPRSLQQPVWADQATTFQEITADSEVDTPDISVERELMRRHVRNLLSVLNPKERRIIRLRFGIEDGQEKTLLEIGNVFGLSKERVRQLESRAL
KLM MSRIPRSLQQPVWADQ TT+QEITADSEVDTPD+SVERELMRRH+RNLLS+L+PKERRIIRLRFGIEDG+EKTLLEIGN+FGLSKERVRQLE+RAL
Subjt: KLMLMSRIPRSLQQPVWADQATTFQEITADSEVDTPDISVERELMRRHVRNLLSVLNPKERRIIRLRFGIEDGQEKTLLEIGNVFGLSKERVRQLESRAL
Query: YKLKRCCNAQGLDAYADLLT
YKLKRCCN+QGL AYADLLT
Subjt: YKLKRCCNAQGLDAYADLLT
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| A0A6J1CRW8 RNA polymerase sigma factor sigF, chloroplastic | 2.7e-252 | 85.88 | Show/hide |
Query: VSMLHEQATPARYFSAAFLSQEQHQECRPQSQTLKDDRTSQMTLDRKLTERSVSIDEASRSGHDHLIWELKHQAVEWSNLLSSWPSLEMRECKISSVEKQ
V MLH+QATPARYFS +F+ QEQH ECRPQSQ LKDD+TSQMTLDR+L ERSVSIDE SR GHDHL+WELKHQA EW LLSSWPSL+M E KISSVEKQ
Subjt: VSMLHEQATPARYFSAAFLSQEQHQECRPQSQTLKDDRTSQMTLDRKLTERSVSIDEASRSGHDHLIWELKHQAVEWSNLLSSWPSLEMRECKISSVEKQ
Query: SNNPS-REMLAEDEPENVIALAKKALLASKQAASFVDKSGFVGTNQD---SFSSEDYLSKESRTVKSTKLQDRRSKKRRVPKHVTTIHEAYNYKGKDTRR
NN S RE+L EDEPE+VIALAKKAL ASKQAAS V++S VGTN D S SSED L KE VKST+LQDRRSK+RRVPKHVTTIHE YN +GKDTRR
Subjt: SNNPS-REMLAEDEPENVIALAKKALLASKQAASFVDKSGFVGTNQD---SFSSEDYLSKESRTVKSTKLQDRRSKKRRVPKHVTTIHEAYNYKGKDTRR
Query: KASEHFDPNDPLRLFLWGPETKKLLTPQEESELIVQIQDLMILDNVKARLQSQFGREPTLVEWAEALGLTCQRLQSQLHCFRVSREKLINANLRMVVHIA
K +E+FDPNDPLRLFLWGPETKKLLT QEESELIVQIQDLMIL+NVKARLQSQFGREPTLVEWAEA+G+TCQ LQSQLHCFRVSREKLINANLRMVVHIA
Subjt: KASEHFDPNDPLRLFLWGPETKKLLTPQEESELIVQIQDLMILDNVKARLQSQFGREPTLVEWAEALGLTCQRLQSQLHCFRVSREKLINANLRMVVHIA
Query: KQYQGRGLSFQDLLQEGSLGLMKSVEKFKPQAGCRFATYAYWWIRQSIRKAIFEHSRTIRLPENVFGLLGKVTEAKNYFVREGNYKPSKEELASHVGITV
K+YQGRGLS DLLQEGSLGLMKSVEKFKPQAGCRFATYAYWWIRQSIRKAIFEHSRTIRLPENV+GLLGKVTEAKN+FVREGNYKPSKEELA+HVGITV
Subjt: KQYQGRGLSFQDLLQEGSLGLMKSVEKFKPQAGCRFATYAYWWIRQSIRKAIFEHSRTIRLPENVFGLLGKVTEAKNYFVREGNYKPSKEELASHVGITV
Query: ERLDKLMLMSRIPRSLQQPVWADQATTFQEITADSEVDTPDISVERELMRRHVRNLLSVLNPKERRIIRLRFGIEDGQEKTLLEIGNVFGLSKERVRQLE
ERLDKL+ MSRIPRSLQQPVWADQ TTFQEITADSEVDTPD+SVERELMRRH+RNLLS+L+PKERRIIRLR+GIEDG+EKTLLEIGN+FGLSKERVRQLE
Subjt: ERLDKLMLMSRIPRSLQQPVWADQATTFQEITADSEVDTPDISVERELMRRHVRNLLSVLNPKERRIIRLRFGIEDGQEKTLLEIGNVFGLSKERVRQLE
Query: SRALYKLKRCCNAQGLDAYADLLT
+RALYKLKRCCN+QGL AYADLLT
Subjt: SRALYKLKRCCNAQGLDAYADLLT
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| SwissProt top hits | e value | %identity | Alignment |
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| O22056 RNA polymerase sigma factor sigB | 9.8e-66 | 35.81 | Show/hide |
Query: IALAKKALLASKQAASFVDKSGFVGTNQDSFSSEDYLSKE---SRTVKSTKLQDRRSKKRR-VPKHVTTIHEAYNYKGKDTRRKASEHFDPNDPLRLFLW
+A++ +++ K AS +K + + L ++ S V+ST+ +R++++ + + K + I +R ++ D NDPLR
Subjt: IALAKKALLASKQAASFVDKSGFVGTNQDSFSSEDYLSKE---SRTVKSTKLQDRRSKKRR-VPKHVTTIHEAYNYKGKDTRRKASEHFDPNDPLRLFLW
Query: GPETKKLLTPQEESELIVQIQDLMILDNVKARLQSQFGREPTLVEWAEALGLTCQRLQSQLHCFRVSREKLINANLRMVVHIAKQYQGRGLSFQDLLQEG
+ KLLT +EE EL IQDL+ L+ ++ L + GR+PT +WA A G+ + L+ ++H + ++K+I +N+R+V+ IAK YQG G++ QDL+QEG
Subjt: GPETKKLLTPQEESELIVQIQDLMILDNVKARLQSQFGREPTLVEWAEALGLTCQRLQSQLHCFRVSREKLINANLRMVVHIAKQYQGRGLSFQDLLQEG
Query: SLGLMKSVEKFKPQAGCRFATYAYWWIRQSIRKAIFEHSRTIRLPENVFGLLGKVTEAKNYFVREGNYKPSKEELASHVGITVERLDKLMLMSRIPRSLQ
GL++ EKF G +F+TYA+WWI+Q++RK++ + SR IRLP ++ +V EA+ E P EE+A G++++RL ++L + PRSL
Subjt: SLGLMKSVEKFKPQAGCRFATYAYWWIRQSIRKAIFEHSRTIRLPENVFGLLGKVTEAKNYFVREGNYKPSKEELASHVGITVERLDKLMLMSRIPRSLQ
Query: QPVWADQATTFQEITADSEVDTPDISVERELMRRHVRNLLSVLNPKERRIIRLRFGIEDGQEKTLLEIGNVFGLSKERVRQLESRALYKLK
Q + +Q E+ AD E T + + +E MR+ + +L L +E+++IR RFG+EDG+ KTL EIG + G+S+ERVRQ+ES A KLK
Subjt: QPVWADQATTFQEITADSEVDTPDISVERELMRRHVRNLLSVLNPKERRIIRLRFGIEDGQEKTLLEIGNVFGLSKERVRQLESRALYKLK
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| P26683 RNA polymerase sigma factor SigA | 7.0e-64 | 39.32 | Show/hide |
Query: EAYNYKGKDTRRKA---SEHFDPNDPLRLFLWGPETKKLLTPQEESELIVQIQDLMILDNVKARLQSQFGREPTLVEWAEALGLTCQRLQSQLHCFRVSR
+A + K +RR+ +H+ D +RL+L +LL EE EL +I DL+ L+ V+ RL + R+P EWAEA+ L + +LH R ++
Subjt: EAYNYKGKDTRRKA---SEHFDPNDPLRLFLWGPETKKLLTPQEESELIVQIQDLMILDNVKARLQSQFGREPTLVEWAEALGLTCQRLQSQLHCFRVSR
Query: EKLINANLRMVVHIAKQYQGRGLSFQDLLQEGSLGLMKSVEKFKPQAGCRFATYAYWWIRQSIRKAIFEHSRTIRLPENVFGLLGKVTEAKNYFVREGNY
+K++ +NLR+VV IAK+Y RGLSFQDL+QEGSLGL+++ EKF + G +F+TYA WWIRQ+I +AI + SRTIRLP +++ + ++ + +E
Subjt: EKLINANLRMVVHIAKQYQGRGLSFQDLLQEGSLGLMKSVEKFKPQAGCRFATYAYWWIRQSIRKAIFEHSRTIRLPENVFGLLGKVTEAKNYFVREGNY
Query: KPSKEELASHVGITVERLDKLMLMSRIPRSLQQPVWADQATTFQEITADSEVDTPDISVERELMRRHVRNLLSVLNPKERRIIRLRFGIEDGQEKTLLEI
KP++EE+A+ + +T+E+L + +++P SL+ P+ ++ + + +S+ +TP+ V + L+R + +L L+P+ER ++RLR+G++DG+ KTL EI
Subjt: KPSKEELASHVGITVERLDKLMLMSRIPRSLQQPVWADQATTFQEITADSEVDTPDISVERELMRRHVRNLLSVLNPKERRIIRLRFGIEDGQEKTLLEI
Query: GNVFGLSKERVRQLESRALYKLK
G +F +++ER+RQ+E++AL KL+
Subjt: GNVFGLSKERVRQLESRALYKLK
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| P38023 RNA polymerase sigma factor SigA1 | 8.6e-62 | 41 | Show/hide |
Query: DPLRLFLWGPETKKLLTPQEESELIVQIQDLMILDNVKARLQSQFGREPTLVEWAEALGLTCQRLQSQLHCFRVSREKLINANLRMVVHIAKQYQGRGLS
D +RL+L +LL EE EL QI DL+ L+ ++ L Q R P+ EWA A+ + +L R +++K++ +NLR+VV IAK+Y RGLS
Subjt: DPLRLFLWGPETKKLLTPQEESELIVQIQDLMILDNVKARLQSQFGREPTLVEWAEALGLTCQRLQSQLHCFRVSREKLINANLRMVVHIAKQYQGRGLS
Query: FQDLLQEGSLGLMKSVEKFKPQAGCRFATYAYWWIRQSIRKAIFEHSRTIRLPENVFGLLGKVTEAKNYFVREGNYKPSKEELASHVGITVERLDKLMLM
FQDL+QEGSLGL+++ EKF + G +F+TYA WWIRQ+I +AI + SRTIRLP +++ + ++ + +E KP++EE+A+ + +T+E+L +
Subjt: FQDLLQEGSLGLMKSVEKFKPQAGCRFATYAYWWIRQSIRKAIFEHSRTIRLPENVFGLLGKVTEAKNYFVREGNYKPSKEELASHVGITVERLDKLMLM
Query: SRIPRSLQQPVWADQATTFQE-ITADSEVDTPDISVERELMRRHVRNLLSVLNPKERRIIRLRFGIEDGQEKTLLEIGNVFGLSKERVRQLESRALYKLK
+++P SL+ P+ ++ + + I AD E TP+ V + L+R + +LS L+P+ER ++RLR+G++DG+ KTL EIG +F +++ER+RQ+E++AL KL+
Subjt: SRIPRSLQQPVWADQATTFQE-ITADSEVDTPDISVERELMRRHVRNLLSVLNPKERRIIRLRFGIEDGQEKTLLEIGNVFGLSKERVRQLESRALYKLK
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| P74565 RNA polymerase sigma factor SigA | 9.2e-56 | 36.05 | Show/hide |
Query: DPLRLFLWGPETKKLLTPQEESELIVQIQDLMILDNVKARLQSQFGREPTLVEWAE---ALGLTCQRL--------------------------------
D +R++L +LL +EE EL QI DL+ L+ ++ L Q R+P+ +EW + L QRL
Subjt: DPLRLFLWGPETKKLLTPQEESELIVQIQDLMILDNVKARLQSQFGREPTLVEWAE---ALGLTCQRL--------------------------------
Query: ---------QSQLHCFRVSREKLINANLRMVVHIAKQYQGRGLSFQDLLQEGSLGLMKSVEKFKPQAGCRFATYAYWWIRQSIRKAIFEHSRTIRLPENV
+ +L R +++K++ +NLR+VV IAK+Y RGLSFQDL+QEGSLGL+++ EKF + G +F+TYA WWIRQ+I +AI + SRTIRLP ++
Subjt: ---------QSQLHCFRVSREKLINANLRMVVHIAKQYQGRGLSFQDLLQEGSLGLMKSVEKFKPQAGCRFATYAYWWIRQSIRKAIFEHSRTIRLPENV
Query: FGLLGKVTEAKNYFVREGNYKPSKEELASHVGITVERLDKLMLMSRIPRSLQQPVWADQATTFQE-ITADSEVDTPDISVERELMRRHVRNLLSVLNPKE
+ + ++ + +E KP++EE+A + +T+E+L + +++P SL+ P+ ++ + + I AD E TP+ V + L+R + N+L L+P+E
Subjt: FGLLGKVTEAKNYFVREGNYKPSKEELASHVGITVERLDKLMLMSRIPRSLQQPVWADQATTFQE-ITADSEVDTPDISVERELMRRHVRNLLSVLNPKE
Query: RRIIRLRFGIEDGQEKTLLEIGNVFGLSKERVRQLESRALYKLK
R ++RLR+G++DG+ KTL EIG +F +++ER+RQ+E++AL KL+
Subjt: RRIIRLRFGIEDGQEKTLLEIGNVFGLSKERVRQLESRALYKLK
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| Q9LD95 RNA polymerase sigma factor sigF, chloroplastic | 3.2e-149 | 54.12 | Show/hide |
Query: MEAGLNLLSSSSPFNSRCHLRSFIHPSCSSSSLGNVFVSMLHEQATP-----------ARYFSAAFLSQEQHQECRPQSQTLKDDRTSQMTLDRKLTERS
MEA NL+SSS F ++ HL+S S SS S V MLH+Q T +R+F A+ LSQE +E RP S L+DDRTSQ+TL+R+ +
Subjt: MEAGLNLLSSSSPFNSRCHLRSFIHPSCSSSSLGNVFVSMLHEQATP-----------ARYFSAAFLSQEQHQECRPQSQTLKDDRTSQMTLDRKLTERS
Query: VSIDEASRSGHDHLIWELKHQAVEWSNLLSSWPSLEMRECKISSVEKQSNNPSREMLAEDEPENVIALAKKALLASKQAASFVDKSGFVGTN--QDSFSS
VS E + +L H W+ L+S S E K+ +V LA+ E +V+ALA+KAL ASKQAA VD + ++ +DS S+
Subjt: VSIDEASRSGHDHLIWELKHQAVEWSNLLSSWPSLEMRECKISSVEKQSNNPSREMLAEDEPENVIALAKKALLASKQAASFVDKSGFVGTN--QDSFSS
Query: EDYLS--KESRTVKSTKLQDRRSKKRRVPKHVTTIHEAYNYKGKDTRRKASEHFDPNDPLRLFLWGPETKKLLTPQEESELIVQIQDLMILDNVKARLQS
+S ++ V+S + +RR+K RR PK E Y + ++K + D +D L+LFLWGPETK+LLT +EE+ELI IQ L+ L+ VK +L+S
Subjt: EDYLS--KESRTVKSTKLQDRRSKKRRVPKHVTTIHEAYNYKGKDTRRKASEHFDPNDPLRLFLWGPETKKLLTPQEESELIVQIQDLMILDNVKARLQS
Query: QFGREPTLVEWAEALGLTCQRLQSQLHCFRVSREKLINANLRMVVHIAKQYQGRGLSFQDLLQEGSLGLMKSVEKFKPQAGCRFATYAYWWIRQSIRKAI
Q G EPT+ EWAEA+G++ L+S +H R SREKLI ANLR+VVHIAKQYQ RGL+FQDLLQEGS+GLMKSVEKFKPQ+GCRFATYAYWWIRQSIRK+I
Subjt: QFGREPTLVEWAEALGLTCQRLQSQLHCFRVSREKLINANLRMVVHIAKQYQGRGLSFQDLLQEGSLGLMKSVEKFKPQAGCRFATYAYWWIRQSIRKAI
Query: FEHSRTIRLPENVFGLLGKVTEAKNYFVREGNYKPSKEELASHVGITVERLDKLMLMSRIPRSLQQPVWADQATTFQEITADSEVDTPDISVERELMRRH
F++SRTIRLPENV+ LLGKV+EA+ V+EGNY+PSKEELA HVG++ E+LDKL+ +R P S+QQP+W+DQ TTFQEIT DS ++TP +SV ++LMR H
Subjt: FEHSRTIRLPENVFGLLGKVTEAKNYFVREGNYKPSKEELASHVGITVERLDKLMLMSRIPRSLQQPVWADQATTFQEITADSEVDTPDISVERELMRRH
Query: VRNLLSVLNPKERRIIRLRFGIEDGQEKTLLEIGNVFGLSKERVRQLESRALYKLKRCCNAQGLDAYADLL
VRNLL+VL+PKERRII+LRFGI+ G++++L EIG ++GLSKERVRQLESRALY+LK+ N+ GL AYADLL
Subjt: VRNLLSVLNPKERRIIRLRFGIEDGQEKTLLEIGNVFGLSKERVRQLESRALYKLKRCCNAQGLDAYADLL
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| Arabidopsis top hits | e value | %identity | Alignment |
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| AT1G08540.1 RNApolymerase sigma subunit 2 | 7.0e-67 | 35.81 | Show/hide |
Query: IALAKKALLASKQAASFVDKSGFVGTNQDSFSSEDYLSKE---SRTVKSTKLQDRRSKKRR-VPKHVTTIHEAYNYKGKDTRRKASEHFDPNDPLRLFLW
+A++ +++ K AS +K + + L ++ S V+ST+ +R++++ + + K + I +R ++ D NDPLR
Subjt: IALAKKALLASKQAASFVDKSGFVGTNQDSFSSEDYLSKE---SRTVKSTKLQDRRSKKRR-VPKHVTTIHEAYNYKGKDTRRKASEHFDPNDPLRLFLW
Query: GPETKKLLTPQEESELIVQIQDLMILDNVKARLQSQFGREPTLVEWAEALGLTCQRLQSQLHCFRVSREKLINANLRMVVHIAKQYQGRGLSFQDLLQEG
+ KLLT +EE EL IQDL+ L+ ++ L + GR+PT +WA A G+ + L+ ++H + ++K+I +N+R+V+ IAK YQG G++ QDL+QEG
Subjt: GPETKKLLTPQEESELIVQIQDLMILDNVKARLQSQFGREPTLVEWAEALGLTCQRLQSQLHCFRVSREKLINANLRMVVHIAKQYQGRGLSFQDLLQEG
Query: SLGLMKSVEKFKPQAGCRFATYAYWWIRQSIRKAIFEHSRTIRLPENVFGLLGKVTEAKNYFVREGNYKPSKEELASHVGITVERLDKLMLMSRIPRSLQ
GL++ EKF G +F+TYA+WWI+Q++RK++ + SR IRLP ++ +V EA+ E P EE+A G++++RL ++L + PRSL
Subjt: SLGLMKSVEKFKPQAGCRFATYAYWWIRQSIRKAIFEHSRTIRLPENVFGLLGKVTEAKNYFVREGNYKPSKEELASHVGITVERLDKLMLMSRIPRSLQ
Query: QPVWADQATTFQEITADSEVDTPDISVERELMRRHVRNLLSVLNPKERRIIRLRFGIEDGQEKTLLEIGNVFGLSKERVRQLESRALYKLK
Q + +Q E+ AD E T + + +E MR+ + +L L +E+++IR RFG+EDG+ KTL EIG + G+S+ERVRQ+ES A KLK
Subjt: QPVWADQATTFQEITADSEVDTPDISVERELMRRHVRNLLSVLNPKERRIIRLRFGIEDGQEKTLLEIGNVFGLSKERVRQLESRALYKLK
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| AT1G64860.1 sigma factor A | 6.0e-34 | 30.28 | Show/hide |
Query: TRRKASEHFDPNDPLRLFLWGPETKKLLTPQEESELIVQIQDLMILDNVKARLQSQFGREPTLVEWAEALGLTCQRLQSQLHCFRVSREKLINANLRMVV
T KA +R ++ G ++ +L+ E L +I+ + LD+ K+RL+ + G EP+ + A +L ++ LQ+ L ++REKL +N+R+V+
Subjt: TRRKASEHFDPNDPLRLFLWGPETKKLLTPQEESELIVQIQDLMILDNVKARLQSQFGREPTLVEWAEALGLTCQRLQSQLHCFRVSREKLINANLRMVV
Query: HIAKQYQGRGLSFQDLLQEGSLGLMKSVEKFKPQAGCRFATYAYWWIRQSIRKAIFEHSRTIRLPENVFGLLGKVTEAKNYFVREGNYKPSKEELASHVG
IA++Y G DL+Q G +GL++ +EKF G R +TY YWWIRQ + +A+ ++SRT+RLP ++ LG + AK ++E PS + +A +
Subjt: HIAKQYQGRGLSFQDLLQEGSLGLMKSVEKFKPQAGCRFATYAYWWIRQSIRKAIFEHSRTIRLPENVFGLLGKVTEAKNYFVREGNYKPSKEELASHVG
Query: ITVERL----DKLMLMSRIPRSLQQPVWADQATTFQEITADSEVD-TPDISVERELMRRHVRNLLS-VLNPKERRIIRLRFGIEDGQEKTLLEIGNVFGL
++ +++ + + + + R + T AD+ ++ P + ++ V L+S L +E+ IIRL +G+ D + T +I GL
Subjt: ITVERL----DKLMLMSRIPRSLQQPVWADQATTFQEITADSEVD-TPDISVERELMRRHVRNLLS-VLNPKERRIIRLRFGIEDGQEKTLLEIGNVFGL
Query: SKERVRQLESRALYKLKRCCNAQGLDA
S+ERVRQ+ AL KLK + ++A
Subjt: SKERVRQLESRALYKLKRCCNAQGLDA
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| AT2G36990.1 RNApolymerase sigma-subunit F | 2.3e-150 | 54.12 | Show/hide |
Query: MEAGLNLLSSSSPFNSRCHLRSFIHPSCSSSSLGNVFVSMLHEQATP-----------ARYFSAAFLSQEQHQECRPQSQTLKDDRTSQMTLDRKLTERS
MEA NL+SSS F ++ HL+S S SS S V MLH+Q T +R+F A+ LSQE +E RP S L+DDRTSQ+TL+R+ +
Subjt: MEAGLNLLSSSSPFNSRCHLRSFIHPSCSSSSLGNVFVSMLHEQATP-----------ARYFSAAFLSQEQHQECRPQSQTLKDDRTSQMTLDRKLTERS
Query: VSIDEASRSGHDHLIWELKHQAVEWSNLLSSWPSLEMRECKISSVEKQSNNPSREMLAEDEPENVIALAKKALLASKQAASFVDKSGFVGTN--QDSFSS
VS E + +L H W+ L+S S E K+ +V LA+ E +V+ALA+KAL ASKQAA VD + ++ +DS S+
Subjt: VSIDEASRSGHDHLIWELKHQAVEWSNLLSSWPSLEMRECKISSVEKQSNNPSREMLAEDEPENVIALAKKALLASKQAASFVDKSGFVGTN--QDSFSS
Query: EDYLS--KESRTVKSTKLQDRRSKKRRVPKHVTTIHEAYNYKGKDTRRKASEHFDPNDPLRLFLWGPETKKLLTPQEESELIVQIQDLMILDNVKARLQS
+S ++ V+S + +RR+K RR PK E Y + ++K + D +D L+LFLWGPETK+LLT +EE+ELI IQ L+ L+ VK +L+S
Subjt: EDYLS--KESRTVKSTKLQDRRSKKRRVPKHVTTIHEAYNYKGKDTRRKASEHFDPNDPLRLFLWGPETKKLLTPQEESELIVQIQDLMILDNVKARLQS
Query: QFGREPTLVEWAEALGLTCQRLQSQLHCFRVSREKLINANLRMVVHIAKQYQGRGLSFQDLLQEGSLGLMKSVEKFKPQAGCRFATYAYWWIRQSIRKAI
Q G EPT+ EWAEA+G++ L+S +H R SREKLI ANLR+VVHIAKQYQ RGL+FQDLLQEGS+GLMKSVEKFKPQ+GCRFATYAYWWIRQSIRK+I
Subjt: QFGREPTLVEWAEALGLTCQRLQSQLHCFRVSREKLINANLRMVVHIAKQYQGRGLSFQDLLQEGSLGLMKSVEKFKPQAGCRFATYAYWWIRQSIRKAI
Query: FEHSRTIRLPENVFGLLGKVTEAKNYFVREGNYKPSKEELASHVGITVERLDKLMLMSRIPRSLQQPVWADQATTFQEITADSEVDTPDISVERELMRRH
F++SRTIRLPENV+ LLGKV+EA+ V+EGNY+PSKEELA HVG++ E+LDKL+ +R P S+QQP+W+DQ TTFQEIT DS ++TP +SV ++LMR H
Subjt: FEHSRTIRLPENVFGLLGKVTEAKNYFVREGNYKPSKEELASHVGITVERLDKLMLMSRIPRSLQQPVWADQATTFQEITADSEVDTPDISVERELMRRH
Query: VRNLLSVLNPKERRIIRLRFGIEDGQEKTLLEIGNVFGLSKERVRQLESRALYKLKRCCNAQGLDAYADLL
VRNLL+VL+PKERRII+LRFGI+ G++++L EIG ++GLSKERVRQLESRALY+LK+ N+ GL AYADLL
Subjt: VRNLLSVLNPKERRIIRLRFGIEDGQEKTLLEIGNVFGLSKERVRQLESRALYKLKRCCNAQGLDAYADLL
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| AT3G53920.1 RNApolymerase sigma-subunit C | 1.6e-39 | 28.67 | Show/hide |
Query: QEESELIVQIQDLMILDNVKARLQSQFGREPTLVEWAEALGLTCQRLQSQLHCFRVSREKLINANLRMVVHIAKQYQGRGLSFQDLLQEGSLGLMKSVEK
+ E+E+ ++ + ++ ++ +L+ + G+ +L WA A G+ + L LH R++L+ + +V+ +A+ Y+G G++ +DL+Q G +G+++ E+
Subjt: QEESELIVQIQDLMILDNVKARLQSQFGREPTLVEWAEALGLTCQRLQSQLHCFRVSREKLINANLRMVVHIAKQYQGRGLSFQDLLQEGSLGLMKSVEK
Query: FKPQAGCRFATYAYWWIRQSIRKAIFEHSRTIRLPENVFGLLGKVTEA-KNYFVREGNYKPSKEELASHVGITVERLDKLMLMSRIPRSLQQPVWADQAT
F G +F+TY +WIR+S+ + H+R + +P ++ + + +A K G + EE+A G +V+++ ++ S+ + V T
Subjt: FKPQAGCRFATYAYWWIRQSIRKAIFEHSRTIRLPENVFGLLGKVTEA-KNYFVREGNYKPSKEELASHVGITVERLDKLMLMSRIPRSLQQPVWADQAT
Query: TFQEITADSEVDTPDISVERELMRRHVRNLLSVLNPKERRIIRLRFGIEDGQEKTLLEIGNVFGLSKERVRQLESRALYKLKRCCNAQGLDAY
F E T D+ +++P+ +V R+ RR + +LL L P+E++++ LR+G++D + K+L EIG + +SKE +R++E RA+ KL+ NA+ L Y
Subjt: TFQEITADSEVDTPDISVERELMRRHVRNLLSVLNPKERRIIRLRFGIEDGQEKTLLEIGNVFGLSKERVRQLESRALYKLKRCCNAQGLDAY
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| AT5G13730.1 sigma factor 4 | 1.4e-43 | 35.31 | Show/hide |
Query: GPETKKLLTPQEESELIVQIQDLMILDNVKARLQSQFGREPTLVEWAEALGLTCQRLQSQLHCFR-VSREKLINANLRMVVHIAKQYQGRGLSFQDLLQE
G L+ EE +L + +++ L+N+ ++ E V A G +R +++ C R +REK+ R+VV IA YQG+GL+ QDL+QE
Subjt: GPETKKLLTPQEESELIVQIQDLMILDNVKARLQSQFGREPTLVEWAEALGLTCQRLQSQLHCFR-VSREKLINANLRMVVHIAKQYQGRGLSFQDLLQE
Query: GSLGLMKSVEKFKPQAGCRFATYAYWWIRQSIRKAIFEHSRTIRLPENVFGLLGKVTEAKNYFVREGNYKPSKEELASHVGITVERLDKLMLMSRIPRSL
GS+GL++ E+F P G + +TY YWWI+Q+I +AI SR ++LP +++ L KV EA N R+ +PS EE+A H+ + V + + SR P SL
Subjt: GSLGLMKSVEKFKPQAGCRFATYAYWWIRQSIRKAIFEHSRTIRLPENVFGLLGKVTEAKNYFVREGNYKPSKEELASHVGITVERLDKLMLMSRIPRSL
Query: QQPVWADQATTFQEITADSEVDTPDISVERELMRRHVRNLLSVLNPKERRIIRLRFGIEDGQEKTLLEIGNVFGLSKERVRQLESRALYKLKRCCNAQGL
+ + T QEI + P+ V+RE M+ + LL L +E R++ L FG+ + EIG LS+ERVRQ+ AL KL+ N L
Subjt: QQPVWADQATTFQEITADSEVDTPDISVERELMRRHVRNLLSVLNPKERRIIRLRFGIEDGQEKTLLEIGNVFGLSKERVRQLESRALYKLKRCCNAQGL
Query: DAY
Y
Subjt: DAY
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