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Sed0017085 (gene) of Chayote v1 genome

Gene IDSed0017085
OrganismSechium edule (Chayote v1)
Descriptionsplicing factor 3B subunit 3-like
Genome locationLG04:39282098..39282881
RNA-Seq ExpressionSed0017085
SyntenySed0017085
Gene Ontology termsNA
InterPro domainsIPR018846 - Cleavage/polyadenylation specificity factor, A subunit, N-terminal


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAB2084998.1 hypothetical protein ES319_A05G372100v1 [Gossypium barbadense]1.4e-3058.82Show/hide
Query:  DKNVFDKVHFWEVWLSSDCSGAI---FDCFDPKGRAAMIGACERQKLVYV-------------------------LDYSEADQNSTGMVATEAQKQLTFY
        +KNVFDKVH  E +  S C   +   +   DPKGRA MIGACE+QKLVY+                         LDYSEADQ+STG  A EAQK LTFY
Subjt:  DKNVFDKVHFWEVWLSSDCSGAI---FDCFDPKGRAAMIGACERQKLVYV-------------------------LDYSEADQNSTGMVATEAQKQLTFY

Query:  ELDLGLNPVSRKWSEPVDDGANMLVTVPGGEDGPSG
        ELDLGLN VSRKWSE VD+GANMLVTVPGG DGPSG
Subjt:  ELDLGLNPVSRKWSEPVDDGANMLVTVPGGEDGPSG

XP_004147708.1 spliceosome-associated protein 130 A [Cucumis sativus]2.4e-3053.25Show/hide
Query:  DKNVFDKVHFWEVWLSSDCSGAI---FDCFDPKGRAAMIGACERQKLVYV-------------------------------------------LDYSEAD
        DKNVFDK+H  E +  S C   +   +   DPKGRA MIGACE+QKLVYV                                           LDYSEAD
Subjt:  DKNVFDKVHFWEVWLSSDCSGAI---FDCFDPKGRAAMIGACERQKLVYV-------------------------------------------LDYSEAD

Query:  QNSTGMVATEAQKQLTFYELDLGLNPVSRKWSEPVDDGANMLVTVPGGEDGPSG
        Q+STG+ A+EAQK LTFYELDLGLN VSRKWSEPVD+GANMLVTVPGG DGPSG
Subjt:  QNSTGMVATEAQKQLTFYELDLGLNPVSRKWSEPVDDGANMLVTVPGGEDGPSG

XP_008461619.1 PREDICTED: splicing factor 3B subunit 3-like [Cucumis melo]2.4e-3053.25Show/hide
Query:  DKNVFDKVHFWEVWLSSDCSGAI---FDCFDPKGRAAMIGACERQKLVYV-------------------------------------------LDYSEAD
        DKNVFDK+H  E +  S C   +   +   DPKGRA MIGACE+QKLVYV                                           LDYSEAD
Subjt:  DKNVFDKVHFWEVWLSSDCSGAI---FDCFDPKGRAAMIGACERQKLVYV-------------------------------------------LDYSEAD

Query:  QNSTGMVATEAQKQLTFYELDLGLNPVSRKWSEPVDDGANMLVTVPGGEDGPSG
        Q+STG+ A+EAQK LTFYELDLGLN VSRKWSEPVD+GANMLVTVPGG DGPSG
Subjt:  QNSTGMVATEAQKQLTFYELDLGLNPVSRKWSEPVDDGANMLVTVPGGEDGPSG

XP_022138999.1 spliceosome-associated protein 130 A [Momordica charantia]6.4e-3153.9Show/hide
Query:  DKNVFDKVHFWEVWLSSDCSGAI---FDCFDPKGRAAMIGACERQKLVYV-------------------------------------------LDYSEAD
        DKNVFDK+H  E +  S C   +   +   DPKGRA MIGACE+QKLVYV                                           LDYSEAD
Subjt:  DKNVFDKVHFWEVWLSSDCSGAI---FDCFDPKGRAAMIGACERQKLVYV-------------------------------------------LDYSEAD

Query:  QNSTGMVATEAQKQLTFYELDLGLNPVSRKWSEPVDDGANMLVTVPGGEDGPSG
        Q+STG+ ATEAQK LTFYELDLGLN VSRKWSEPVD+GANMLVTVPGG DGPSG
Subjt:  QNSTGMVATEAQKQLTFYELDLGLNPVSRKWSEPVDDGANMLVTVPGGEDGPSG

XP_038891993.1 spliceosome-associated protein 130 A [Benincasa hispida]2.4e-3053.25Show/hide
Query:  DKNVFDKVHFWEVWLSSDCSGAI---FDCFDPKGRAAMIGACERQKLVYV-------------------------------------------LDYSEAD
        DKNVFDK+H  E +  S C   +   +   DPKGRA MIGACE+QKLVYV                                           LDYSEAD
Subjt:  DKNVFDKVHFWEVWLSSDCSGAI---FDCFDPKGRAAMIGACERQKLVYV-------------------------------------------LDYSEAD

Query:  QNSTGMVATEAQKQLTFYELDLGLNPVSRKWSEPVDDGANMLVTVPGGEDGPSG
        Q+STG+ A+EAQK LTFYELDLGLN VSRKWSEPVD+GANMLVTVPGG DGPSG
Subjt:  QNSTGMVATEAQKQLTFYELDLGLNPVSRKWSEPVDDGANMLVTVPGGEDGPSG

TrEMBL top hitse value%identityAlignment
A0A0A0KQ67 Uncharacterized protein1.2e-3053.25Show/hide
Query:  DKNVFDKVHFWEVWLSSDCSGAI---FDCFDPKGRAAMIGACERQKLVYV-------------------------------------------LDYSEAD
        DKNVFDK+H  E +  S C   +   +   DPKGRA MIGACE+QKLVYV                                           LDYSEAD
Subjt:  DKNVFDKVHFWEVWLSSDCSGAI---FDCFDPKGRAAMIGACERQKLVYV-------------------------------------------LDYSEAD

Query:  QNSTGMVATEAQKQLTFYELDLGLNPVSRKWSEPVDDGANMLVTVPGGEDGPSG
        Q+STG+ A+EAQK LTFYELDLGLN VSRKWSEPVD+GANMLVTVPGG DGPSG
Subjt:  QNSTGMVATEAQKQLTFYELDLGLNPVSRKWSEPVDDGANMLVTVPGGEDGPSG

A0A1S3CFL5 splicing factor 3B subunit 3-like1.2e-3053.25Show/hide
Query:  DKNVFDKVHFWEVWLSSDCSGAI---FDCFDPKGRAAMIGACERQKLVYV-------------------------------------------LDYSEAD
        DKNVFDK+H  E +  S C   +   +   DPKGRA MIGACE+QKLVYV                                           LDYSEAD
Subjt:  DKNVFDKVHFWEVWLSSDCSGAI---FDCFDPKGRAAMIGACERQKLVYV-------------------------------------------LDYSEAD

Query:  QNSTGMVATEAQKQLTFYELDLGLNPVSRKWSEPVDDGANMLVTVPGGEDGPSG
        Q+STG+ A+EAQK LTFYELDLGLN VSRKWSEPVD+GANMLVTVPGG DGPSG
Subjt:  QNSTGMVATEAQKQLTFYELDLGLNPVSRKWSEPVDDGANMLVTVPGGEDGPSG

A0A5A7V3N7 Splicing factor 3B subunit 3-like1.2e-3053.25Show/hide
Query:  DKNVFDKVHFWEVWLSSDCSGAI---FDCFDPKGRAAMIGACERQKLVYV-------------------------------------------LDYSEAD
        DKNVFDK+H  E +  S C   +   +   DPKGRA MIGACE+QKLVYV                                           LDYSEAD
Subjt:  DKNVFDKVHFWEVWLSSDCSGAI---FDCFDPKGRAAMIGACERQKLVYV-------------------------------------------LDYSEAD

Query:  QNSTGMVATEAQKQLTFYELDLGLNPVSRKWSEPVDDGANMLVTVPGGEDGPSG
        Q+STG+ A+EAQK LTFYELDLGLN VSRKWSEPVD+GANMLVTVPGG DGPSG
Subjt:  QNSTGMVATEAQKQLTFYELDLGLNPVSRKWSEPVDDGANMLVTVPGGEDGPSG

A0A5J5VXY0 Uncharacterized protein6.9e-3158.82Show/hide
Query:  DKNVFDKVHFWEVWLSSDCSGAI---FDCFDPKGRAAMIGACERQKLVYV-------------------------LDYSEADQNSTGMVATEAQKQLTFY
        +KNVFDKVH  E +  S C   +   +   DPKGRA MIGACE+QKLVY+                         LDYSEADQ+STG  A EAQK LTFY
Subjt:  DKNVFDKVHFWEVWLSSDCSGAI---FDCFDPKGRAAMIGACERQKLVYV-------------------------LDYSEADQNSTGMVATEAQKQLTFY

Query:  ELDLGLNPVSRKWSEPVDDGANMLVTVPGGEDGPSG
        ELDLGLN VSRKWSE VD+GANMLVTVPGG DGPSG
Subjt:  ELDLGLNPVSRKWSEPVDDGANMLVTVPGGEDGPSG

A0A6J1CBN6 spliceosome-associated protein 130 A3.1e-3153.9Show/hide
Query:  DKNVFDKVHFWEVWLSSDCSGAI---FDCFDPKGRAAMIGACERQKLVYV-------------------------------------------LDYSEAD
        DKNVFDK+H  E +  S C   +   +   DPKGRA MIGACE+QKLVYV                                           LDYSEAD
Subjt:  DKNVFDKVHFWEVWLSSDCSGAI---FDCFDPKGRAAMIGACERQKLVYV-------------------------------------------LDYSEAD

Query:  QNSTGMVATEAQKQLTFYELDLGLNPVSRKWSEPVDDGANMLVTVPGGEDGPSG
        Q+STG+ ATEAQK LTFYELDLGLN VSRKWSEPVD+GANMLVTVPGG DGPSG
Subjt:  QNSTGMVATEAQKQLTFYELDLGLNPVSRKWSEPVDDGANMLVTVPGGEDGPSG

SwissProt top hitse value%identityAlignment
A0JN52 Splicing factor 3B subunit 35.7e-2241.18Show/hide
Query:  KNVFDKVHFWEVWLSSDCSGAI---FDCFDPKGRAAMIGACERQKLVYVL-------------------------------------------DYSEADQ
        KN+F+K+H  E +  S C   +   F   DPKGRA MI A E+QKLVY+L                                           DY EAD 
Subjt:  KNVFDKVHFWEVWLSSDCSGAI---FDCFDPKGRAAMIGACERQKLVYVL-------------------------------------------DYSEADQ

Query:  NSTGMVATEAQKQLTFYELDLGLNPVSRKWSEPVDDGANMLVTVPGGEDGPSG
        + TG  A   Q+ LTFYELDLGLN V RK+SEP+++  N L+TVPGG DGPSG
Subjt:  NSTGMVATEAQKQLTFYELDLGLNPVSRKWSEPVDDGANMLVTVPGGEDGPSG

P0DKL4 Spliceosome-associated protein 130 A1.0e-3151.95Show/hide
Query:  DKNVFDKVHFWEVWLSSDCSGAI---FDCFDPKGRAAMIGACERQKLVYV-------------------------------------------LDYSEAD
        +KNVFDKVH  E +  S C   +   +   DPKGRA MIGACE+QKLVYV                                           LDYSEAD
Subjt:  DKNVFDKVHFWEVWLSSDCSGAI---FDCFDPKGRAAMIGACERQKLVYV-------------------------------------------LDYSEAD

Query:  QNSTGMVATEAQKQLTFYELDLGLNPVSRKWSEPVDDGANMLVTVPGGEDGPSG
        Q+ TG  A+EAQK LTFYELDLGLN VSRKWS PVD+GANMLVTVPGG DGPSG
Subjt:  QNSTGMVATEAQKQLTFYELDLGLNPVSRKWSEPVDDGANMLVTVPGGEDGPSG

P0DKL6 Spliceosome-associated protein 130 B1.0e-3151.95Show/hide
Query:  DKNVFDKVHFWEVWLSSDCSGAI---FDCFDPKGRAAMIGACERQKLVYV-------------------------------------------LDYSEAD
        +KNVFDKVH  E +  S C   +   +   DPKGRA MIGACE+QKLVYV                                           LDYSEAD
Subjt:  DKNVFDKVHFWEVWLSSDCSGAI---FDCFDPKGRAAMIGACERQKLVYV-------------------------------------------LDYSEAD

Query:  QNSTGMVATEAQKQLTFYELDLGLNPVSRKWSEPVDDGANMLVTVPGGEDGPSG
        Q+ TG  A+EAQK LTFYELDLGLN VSRKWS PVD+GANMLVTVPGG DGPSG
Subjt:  QNSTGMVATEAQKQLTFYELDLGLNPVSRKWSEPVDDGANMLVTVPGGEDGPSG

Q15393 Splicing factor 3B subunit 35.7e-2241.18Show/hide
Query:  KNVFDKVHFWEVWLSSDCSGAI---FDCFDPKGRAAMIGACERQKLVYVL-------------------------------------------DYSEADQ
        KN+F+K+H  E +  S C   +   F   DPKGRA MI A E+QKLVY+L                                           DY EAD 
Subjt:  KNVFDKVHFWEVWLSSDCSGAI---FDCFDPKGRAAMIGACERQKLVYVL-------------------------------------------DYSEADQ

Query:  NSTGMVATEAQKQLTFYELDLGLNPVSRKWSEPVDDGANMLVTVPGGEDGPSG
        + TG  A   Q+ LTFYELDLGLN V RK+SEP+++  N L+TVPGG DGPSG
Subjt:  NSTGMVATEAQKQLTFYELDLGLNPVSRKWSEPVDDGANMLVTVPGGEDGPSG

Q921M3 Splicing factor 3B subunit 35.7e-2241.18Show/hide
Query:  KNVFDKVHFWEVWLSSDCSGAI---FDCFDPKGRAAMIGACERQKLVYVL-------------------------------------------DYSEADQ
        KN+F+K+H  E +  S C   +   F   DPKGRA MI A E+QKLVY+L                                           DY EAD 
Subjt:  KNVFDKVHFWEVWLSSDCSGAI---FDCFDPKGRAAMIGACERQKLVYVL-------------------------------------------DYSEADQ

Query:  NSTGMVATEAQKQLTFYELDLGLNPVSRKWSEPVDDGANMLVTVPGGEDGPSG
        + TG  A   Q+ LTFYELDLGLN V RK+SEP+++  N L+TVPGG DGPSG
Subjt:  NSTGMVATEAQKQLTFYELDLGLNPVSRKWSEPVDDGANMLVTVPGGEDGPSG

Arabidopsis top hitse value%identityAlignment
AT3G55200.1 Cleavage and polyadenylation specificity factor (CPSF) A subunit protein7.3e-3351.95Show/hide
Query:  DKNVFDKVHFWEVWLSSDCSGAI---FDCFDPKGRAAMIGACERQKLVYV-------------------------------------------LDYSEAD
        +KNVFDKVH  E +  S C   +   +   DPKGRA MIGACE+QKLVYV                                           LDYSEAD
Subjt:  DKNVFDKVHFWEVWLSSDCSGAI---FDCFDPKGRAAMIGACERQKLVYV-------------------------------------------LDYSEAD

Query:  QNSTGMVATEAQKQLTFYELDLGLNPVSRKWSEPVDDGANMLVTVPGGEDGPSG
        Q+ TG  A+EAQK LTFYELDLGLN VSRKWS PVD+GANMLVTVPGG DGPSG
Subjt:  QNSTGMVATEAQKQLTFYELDLGLNPVSRKWSEPVDDGANMLVTVPGGEDGPSG

AT3G55220.1 Cleavage and polyadenylation specificity factor (CPSF) A subunit protein7.3e-3351.95Show/hide
Query:  DKNVFDKVHFWEVWLSSDCSGAI---FDCFDPKGRAAMIGACERQKLVYV-------------------------------------------LDYSEAD
        +KNVFDKVH  E +  S C   +   +   DPKGRA MIGACE+QKLVYV                                           LDYSEAD
Subjt:  DKNVFDKVHFWEVWLSSDCSGAI---FDCFDPKGRAAMIGACERQKLVYV-------------------------------------------LDYSEAD

Query:  QNSTGMVATEAQKQLTFYELDLGLNPVSRKWSEPVDDGANMLVTVPGGEDGPSG
        Q+ TG  A+EAQK LTFYELDLGLN VSRKWS PVD+GANMLVTVPGG DGPSG
Subjt:  QNSTGMVATEAQKQLTFYELDLGLNPVSRKWSEPVDDGANMLVTVPGGEDGPSG


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGGCTTATGATGTTCGTTGAGAACCTTCAACTCTTCAAGGAAAGTCTGGATAAAAATGTGTTTGACAAGGTACACTTTTGGGAAGTCTGGTTGTCGTCGGATTGTTC
CGGGGCAATATTTGACTGTTTTGACCCTAAAGGAAGGGCTGCTATGATTGGCGCTTGTGAGAGGCAGAAGCTTGTTTATGTCTTGGATTACTCGGAGGCAGATCAGAATT
CTACTGGGATGGTGGCAACTGAGGCCCAGAAGCAATTGACTTTTTATGAACTTGATCTTGGTCTCAATCCTGTCTCTAGGAAGTGGTCAGAGCCTGTTGATGATGGTGCT
AATATGCTTGTTACCGTTCCTGGAGGTGAAGATGGTCCTAGCGGCTAA
mRNA sequenceShow/hide mRNA sequence
ATGAGGCTTATGATGTTCGTTGAGAACCTTCAACTCTTCAAGGAAAGTCTGGATAAAAATGTGTTTGACAAGGTACACTTTTGGGAAGTCTGGTTGTCGTCGGATTGTTC
CGGGGCAATATTTGACTGTTTTGACCCTAAAGGAAGGGCTGCTATGATTGGCGCTTGTGAGAGGCAGAAGCTTGTTTATGTCTTGGATTACTCGGAGGCAGATCAGAATT
CTACTGGGATGGTGGCAACTGAGGCCCAGAAGCAATTGACTTTTTATGAACTTGATCTTGGTCTCAATCCTGTCTCTAGGAAGTGGTCAGAGCCTGTTGATGATGGTGCT
AATATGCTTGTTACCGTTCCTGGAGGTGAAGATGGTCCTAGCGGCTAA
Protein sequenceShow/hide protein sequence
MRLMMFVENLQLFKESLDKNVFDKVHFWEVWLSSDCSGAIFDCFDPKGRAAMIGACERQKLVYVLDYSEADQNSTGMVATEAQKQLTFYELDLGLNPVSRKWSEPVDDGA
NMLVTVPGGEDGPSG