CuGenDBv2

Gene ID	Sed0017135
Organism	Sechium edule (Chayote v1)
Description	Retrovirus-related Pol polyprotein from transposon TNT 1-94
Genome location	LG14:18961300..18962285
RNA-Seq Expression	Sed0017135
Synteny	Sed0017135
Gene Ontology terms	NA
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

TXG55646.1 hypothetical protein EZV62_020902 [Acer yangbiense]

3.9e-31

38.77

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Query:  MVEYLTLMKSYSDNLYLAGSPLDNKELISYVISGLDEEYTPIVVVIQNQE-MSFNQVQNQLMSFERRLEELQTL--KGTISINQPSAHIASSNPHQSRSA
        M EYLT MK+++D+L +AG P     L + +++GLD EY PIVV+I+ +E  ++ ++ + L+S++ +LE +  +  KG + ++ PSAH+A++ P+ + + 
Subjt:  MVEYLTLMKSYSDNLYLAGSPLDNKELISYVISGLDEEYTPIVVVIQNQE-MSFNQVQNQLMSFERRLEELQTL--KGTISINQPSAHIASSNPHQSRSA

Query:  K--------THGSNYQ------KGGRGRGRGRFSRGNN-KPICQVCGKIGHTAAVCYSRFDRDINNQNTRNAQNNPQTNNNHGGNEAMLATPEHVNDQAW
                   G N        +GG GR RGR  R NN +P CQVCGK GH+A+VCY R+D +          + P  N+N       +ATPE V+D  W
Subjt:  K--------THGSNYQ------KGGRGRGRGRFSRGNN-KPICQVCGKIGHTAAVCYSRFDRDINNQNTRNAQNNPQTNNNHGGNEAMLATPEHVNDQAW

Query:  YFDSGASSHLTSDLGNLSIRSGYTGQE
        Y DSGA++H+T+D GNL ++S Y G E
Subjt:  YFDSGASSHLTSDLGNLSIRSGYTGQE

TXG67243.1 hypothetical protein EZV62_008518 [Acer yangbiense]

2.5e-30

38.77

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Query:  MVEYLTLMKSYSDNLYLAGSPLDNKELISYVISGLDEEYTPIVVVIQNQE-MSFNQVQNQLMSFERRLEELQTL--KGTISINQPSAHIASSNPHQSRSA
        M EYLT MK+++D+L +AG P     L +  ++GLD EY PIVV+I+ +E  ++ ++ + L+S++ +LE +  +  KG + ++ PSAH+A++ P+ + + 
Subjt:  MVEYLTLMKSYSDNLYLAGSPLDNKELISYVISGLDEEYTPIVVVIQNQE-MSFNQVQNQLMSFERRLEELQTL--KGTISINQPSAHIASSNPHQSRSA

Query:  K--------THGSNYQ------KGGRGRGRGRFSRGNN-KPICQVCGKIGHTAAVCYSRFDRDINNQNTRNAQNNPQTNNNHGGNEAMLATPEHVNDQAW
                   G N        +GG GR RGR  R NN +P CQVCGK GH+A+VCY R+D +          + P  N+N       +ATPE V+D  W
Subjt:  K--------THGSNYQ------KGGRGRGRGRFSRGNN-KPICQVCGKIGHTAAVCYSRFDRDINNQNTRNAQNNPQTNNNHGGNEAMLATPEHVNDQAW

Query:  YFDSGASSHLTSDLGNLSIRSGYTGQE
        Y DSGA+ H+T+D GNL ++S Y G E
Subjt:  YFDSGASSHLTSDLGNLSIRSGYTGQE

TXG69253.1 hypothetical protein EZV62_004188 [Acer yangbiense]

1.9e-30

38.77

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Query:  MVEYLTLMKSYSDNLYLAGSPLDNKELISYVISGLDEEYTPIVVVIQNQE-MSFNQVQNQLMSFERRLEELQTL--KGTISINQPSAHIASSNPHQSRSA
        M EYLT MK+++D+L +AG P     L +  ++GLD EY PIVV+I+ +E  ++ ++ + L+S++ +LE +  +  KG + ++ PSAH+A++ P+ + + 
Subjt:  MVEYLTLMKSYSDNLYLAGSPLDNKELISYVISGLDEEYTPIVVVIQNQE-MSFNQVQNQLMSFERRLEELQTL--KGTISINQPSAHIASSNPHQSRSA

Query:  K--------THGSNYQ------KGGRGRGRGRFSRGNN-KPICQVCGKIGHTAAVCYSRFDRDINNQNTRNAQNNPQTNNNHGGNEAMLATPEHVNDQAW
                   G N        +GG GR RGR  R NN +P CQVCGK GH+A+VCY R+D +          + P  N+N       +ATPE V+D  W
Subjt:  K--------THGSNYQ------KGGRGRGRGRFSRGNN-KPICQVCGKIGHTAAVCYSRFDRDINNQNTRNAQNNPQTNNNHGGNEAMLATPEHVNDQAW

Query:  YFDSGASSHLTSDLGNLSIRSGYTGQE
        Y DSGA++H+T+D GNL ++S Y G E
Subjt:  YFDSGASSHLTSDLGNLSIRSGYTGQE

XP_030492910.1 uncharacterized protein LOC115709020 isoform X2 [Cannabis sativa]

9.2e-33

41.63

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Query:  MVEYLTLMKSYSDNLYLAGSPLDNKELISYVISGLDEEYTPIVVVIQ-NQEMSFNQVQNQLMSFERRLEELQTL-KGTISINQPSAHIASSNPHQSR---
        MV+YL   K++SD L LAG P     LIS V+SGLD  Y PIV+ I+     ++ ++Q  L+SF+ ++E L  L + +     P+A++A+   + SR   
Subjt:  MVEYLTLMKSYSDNLYLAGSPLDNKELISYVISGLDEEYTPIVVVIQ-NQEMSFNQVQNQLMSFERRLEELQTL-KGTISINQPSAHIASSNPHQSR---

Query:  SAKTH----------GSNYQKGGRGRGRGRFSRGNNKPICQVCGKIGHTAAVCYSRFDRDINNQNTRNAQNNPQTNNNHGGNEAMLATPEHVNDQAWYFD
        +  TH          G+N   G RGRGRGR +  NNKP CQVCGK GH+AAVCY+R++      +   +QN P+   +     A  A+PE V+   WY D
Subjt:  SAKTH----------GSNYQKGGRGRGRGRFSRGNNKPICQVCGKIGHTAAVCYSRFDRDINNQNTRNAQNNPQTNNNHGGNEAMLATPEHVNDQAWYFD

Query:  SGASSHLTSDLGNLSIRSGYTGQEHGEGSSSRE
        SGASSH+TSD  N+S +S Y GQ H EG++ R+
Subjt:  SGASSHLTSDLGNLSIRSGYTGQEHGEGSSSRE

XP_038905164.1 uncharacterized protein LOC120091275 isoform X4 [Benincasa hispida]

3.3e-30

41.99

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Query:  MVEYLTLMKSYSDNLYLAGSPLDNKELISYVISGLDEEYTPIVVVIQNQ-EMSFNQVQNQLMSFERRLEELQTLKGTISINQPS-AHIASSNP-HQSRSA
        M EYL  MK  +DNL  AGSP+  + L+S V+ GLDEEY  IV +IQ + +MS+  +Q++L+ +ERRLE     K T+  NQ S A +  +N  H +++ 
Subjt:  MVEYLTLMKSYSDNLYLAGSPLDNKELISYVISGLDEEYTPIVVVIQNQ-EMSFNQVQNQLMSFERRLEELQTLKGTISINQPS-AHIASSNP-HQSRSA

Query:  KTHGSNY-----QKGGRGRGRGR-FSRGNNKPICQVCGKIGHTAAVCYSRFDRD------------INNQNTRNAQNNPQTNNNHGGNEAMLATPEHVND
        KT+ SN      Q+GG G GRGR   R N KP+CQVCGK+GH A  C++R+ RD              N  T+N Q +P       G+   L   E++ D
Subjt:  KTHGSNY-----QKGGRGRGRGR-FSRGNNKPICQVCGKIGHTAAVCYSRFDRD------------INNQNTRNAQNNPQTNNNHGGNEAMLATPEHVND

Query:  QAWYFDSGASSHLTSDLGNLSIRSGYTGQEH
          WY DSGAS+H+TSD  NL     Y+GQ +
Subjt:  QAWYFDSGASSHLTSDLGNLSIRSGYTGQEH

TrEMBL top hits

e value

%identity

Alignment

A0A5C7HHE9 Uncharacterized protein

1.9e-31

38.77

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Query:  MVEYLTLMKSYSDNLYLAGSPLDNKELISYVISGLDEEYTPIVVVIQNQE-MSFNQVQNQLMSFERRLEELQTL--KGTISINQPSAHIASSNPHQSRSA
        M EYLT MK+++D+L +AG P     L + +++GLD EY PIVV+I+ +E  ++ ++ + L+S++ +LE +  +  KG + ++ PSAH+A++ P+ + + 
Subjt:  MVEYLTLMKSYSDNLYLAGSPLDNKELISYVISGLDEEYTPIVVVIQNQE-MSFNQVQNQLMSFERRLEELQTL--KGTISINQPSAHIASSNPHQSRSA

Query:  K--------THGSNYQ------KGGRGRGRGRFSRGNN-KPICQVCGKIGHTAAVCYSRFDRDINNQNTRNAQNNPQTNNNHGGNEAMLATPEHVNDQAW
                   G N        +GG GR RGR  R NN +P CQVCGK GH+A+VCY R+D +          + P  N+N       +ATPE V+D  W
Subjt:  K--------THGSNYQ------KGGRGRGRGRFSRGNN-KPICQVCGKIGHTAAVCYSRFDRDINNQNTRNAQNNPQTNNNHGGNEAMLATPEHVNDQAW

Query:  YFDSGASSHLTSDLGNLSIRSGYTGQE
        Y DSGA++H+T+D GNL ++S Y G E
Subjt:  YFDSGASSHLTSDLGNLSIRSGYTGQE

A0A5C7ID32 Uncharacterized protein

1.2e-30

38.77

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Query:  MVEYLTLMKSYSDNLYLAGSPLDNKELISYVISGLDEEYTPIVVVIQNQE-MSFNQVQNQLMSFERRLEELQTL--KGTISINQPSAHIASSNPHQSRSA
        M EYLT MK+++D+L +AG P     L +  ++GLD EY PIVV+I+ +E  ++ ++ + L+S++ +LE +  +  KG + ++ PSAH+A++ P+ + + 
Subjt:  MVEYLTLMKSYSDNLYLAGSPLDNKELISYVISGLDEEYTPIVVVIQNQE-MSFNQVQNQLMSFERRLEELQTL--KGTISINQPSAHIASSNPHQSRSA

Query:  K--------THGSNYQ------KGGRGRGRGRFSRGNN-KPICQVCGKIGHTAAVCYSRFDRDINNQNTRNAQNNPQTNNNHGGNEAMLATPEHVNDQAW
                   G N        +GG GR RGR  R NN +P CQVCGK GH+A+VCY R+D +          + P  N+N       +ATPE V+D  W
Subjt:  K--------THGSNYQ------KGGRGRGRGRFSRGNN-KPICQVCGKIGHTAAVCYSRFDRDINNQNTRNAQNNPQTNNNHGGNEAMLATPEHVNDQAW

Query:  YFDSGASSHLTSDLGNLSIRSGYTGQE
        Y DSGA+ H+T+D GNL ++S Y G E
Subjt:  YFDSGASSHLTSDLGNLSIRSGYTGQE

A0A5C7IJ06 Uncharacterized protein

9.3e-31

38.77

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Query:  MVEYLTLMKSYSDNLYLAGSPLDNKELISYVISGLDEEYTPIVVVIQNQE-MSFNQVQNQLMSFERRLEELQTL--KGTISINQPSAHIASSNPHQSRSA
        M EYLT MK+++D+L +AG P     L +  ++GLD EY PIVV+I+ +E  ++ ++ + L+S++ +LE +  +  KG + ++ PSAH+A++ P+ + + 
Subjt:  MVEYLTLMKSYSDNLYLAGSPLDNKELISYVISGLDEEYTPIVVVIQNQE-MSFNQVQNQLMSFERRLEELQTL--KGTISINQPSAHIASSNPHQSRSA

Query:  K--------THGSNYQ------KGGRGRGRGRFSRGNN-KPICQVCGKIGHTAAVCYSRFDRDINNQNTRNAQNNPQTNNNHGGNEAMLATPEHVNDQAW
                   G N        +GG GR RGR  R NN +P CQVCGK GH+A+VCY R+D +          + P  N+N       +ATPE V+D  W
Subjt:  K--------THGSNYQ------KGGRGRGRGRFSRGNN-KPICQVCGKIGHTAAVCYSRFDRDINNQNTRNAQNNPQTNNNHGGNEAMLATPEHVNDQAW

Query:  YFDSGASSHLTSDLGNLSIRSGYTGQE
        Y DSGA++H+T+D GNL ++S Y G E
Subjt:  YFDSGASSHLTSDLGNLSIRSGYTGQE

A0A803NU85 Uncharacterized protein

7.1e-31

40.76

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Query:  MVEYLTLMKSYSDNLYLAGSPLDNKELISYVISGLDEEYTPIVVVIQNQE-MSFNQVQNQLMSFERRLEELQTLK-GTISINQPSAHIA----SSNPHQS
        M +YL   + ++D+L LAG P   K L+S V+SGLD EY  IVV+I+ +E  ++ Q+QN L+SF+ RLE L  +   +  +N PSA+ A     SN  Q 
Subjt:  MVEYLTLMKSYSDNLYLAGSPLDNKELISYVISGLDEEYTPIVVVIQNQE-MSFNQVQNQLMSFERRLEELQTLK-GTISINQPSAHIA----SSNPHQS

Query:  RSAKTHGSNYQKGGRGR--------------GRGRFSRGN-NKPICQVCGKIGHTAAVCYSRFDRDINNQNTRNAQNNPQTNNNHGGNEAMLATPEHVND
              G + Q   RG               GRGR  RGN +KP CQVCGK GH+AA+CY+R+D     Q   N  N+ +  +      A++A PE +ND
Subjt:  RSAKTHGSNYQKGGRGR--------------GRGRFSRGN-NKPICQVCGKIGHTAAVCYSRFDRDINNQNTRNAQNNPQTNNNHGGNEAMLATPEHVND

Query:  QAWYFDSGASSHLTSDLGNLSIRSGYTGQEH---GEGS
         +WY DSGAS+HLTSD   +  +S Y G+E    G+GS
Subjt:  QAWYFDSGASSHLTSDLGNLSIRSGYTGQEH---GEGS

A0A803PQB9 Uncharacterized protein

3.8e-32

38.79

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Query:  MVEYLTLMKSYSDNLYLAGSPLDNKELISYVISGLDEEYTPIVVVIQNQ-EMSFNQVQNQLMSFERRLEELQTLKG---TISINQPSAHIASSNP-----
        M +YL   + ++D L LAG P   K+L+S ++SGLD EY PIV+ ++ +   ++ ++Q+ L+SF+ +L+ L TL G    ++++ PSA++ ++ P     
Subjt:  MVEYLTLMKSYSDNLYLAGSPLDNKELISYVISGLDEEYTPIVVVIQNQ-EMSFNQVQNQLMSFERRLEELQTLKG---TISINQPSAHIASSNP-----

Query:  ----HQSRSAKTH--GSNYQKGGRG----RGRGRFSRGNNKPICQVCGKIGHTAAVCYSRFDRDI----NNQNTRNAQNNPQTNNNHGGNEAMLATPEHV
            H   ++  +   SN QKGGRG    RGRG     N+KP CQVCG+ GH+AA CY+R+D +      +  +         N N+ G  A +ATPE V
Subjt:  ----HQSRSAKTH--GSNYQKGGRG----RGRGRFSRGNNKPICQVCGKIGHTAAVCYSRFDRDI----NNQNTRNAQNNPQTNNNHGGNEAMLATPEHV

Query:  NDQAWYFDSGASSHLTSDLGNLSIRSGYTGQE
         D AWY DSGASSH+T+D  N++ +S Y G+E
Subjt:  NDQAWYFDSGASSHLTSDLGNLSIRSGYTGQE

SwissProt top hits

e value

%identity

Alignment

Q94HW2 Retrovirus-related Pol polyprotein from transposon RE1

2.2e-08

23.79

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Query:  EYLTLMKSYSDNLYLAGSPLDNKELISYVISGLDEEYTPIV--VVIQNQEMSFNQVQNQLMSFERRLEELQTLKGTISINQPSAHIASSNPHQSRSAKTH
        +Y+  + +  D L L G P+D+ E +  V+  L EEY P++  +  ++   +  ++  +L++ E ++         ++++  +    ++N    R+  T 
Subjt:  EYLTLMKSYSDNLYLAGSPLDNKELISYVISGLDEEYTPIV--VVIQNQEMSFNQVQNQLMSFERRLEELQTLKGTISINQPSAHIASSNPHQSRSAKTH

Query:  GSNYQKGGRGRGRGRFSRGNNKP--------------------ICQVCGKIGHTAAVCYSRFDRDINNQNTRNAQNNPQTNNNHGGNEAMLATPEHVNDQ
         +N       R   R +  N+KP                     CQ+CG  GH+A  C S+    +++ N++     P +        A LA     +  
Subjt:  GSNYQKGGRGRGRGRFSRGNNKP--------------------ICQVCGKIGHTAAVCYSRFDRDINNQNTRNAQNNPQTNNNHGGNEAMLATPEHVNDQ

Query:  AWYFDSGASSHLTSDLGNLSIRSGYTG
         W  DSGA+ H+TSD  NLS+   YTG
Subjt:  AWYFDSGASSHLTSDLGNLSIRSGYTG

Q9ZT94 Retrovirus-related Pol polyprotein from transposon RE2

4.8e-08

26.92

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Query:  DNLYLAGSPLDNKELISYVISGLDEEYTPIV--VVIQNQEMSFNQVQNQLMSFERRLEELQTLKGT-ISINQPSAHIASSNPHQSRSA--KTHGSNYQKG
        D L L G P+D+ E +  V+  L ++Y P++  +  ++   S  ++  +L++ E +L  L + +   I+ N  +    ++N +Q+     + + +N  + 
Subjt:  DNLYLAGSPLDNKELISYVISGLDEEYTPIV--VVIQNQEMSFNQVQNQLMSFERRLEELQTLKGT-ISINQPSAHIASSNPHQSRSA--KTHGSNYQKG

Query:  GRGRGRGRFSRGNN---KPI---CQVCGKIGHTAAVC--YSRFDRDINNQNTRNAQNNPQTNNNHGGNEAMLATPEHVNDQAWYFDSGASSHLTSDLGNL
           +     SR +N   KP    CQ+C   GH+A  C    +F    N Q + +     Q   N       LA     N   W  DSGA+ H+TSD  NL
Subjt:  GRGRGRGRFSRGNN---KPI---CQVCGKIGHTAAVC--YSRFDRDINNQNTRNAQNNPQTNNNHGGNEAMLATPEHVNDQAWYFDSGASSHLTSDLGNL

Query:  SIRSGYTG
        S    YTG
Subjt:  SIRSGYTG

Arabidopsis top hits	e value	%identity	Alignment
No hits found

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGGTTGAGTATCTTACTTTAATGAAAAGTTACTCTGACAACTTGTATTTGGCAGGTTCTCCTCTAGATAACAAGGAACTTATCTCCTATGTTATCTCTGGCCTGGATGA
GGAATACACACCCATAGTGGTGGTGATTCAGAATCAGGAGATGTCTTTCAATCAGGTTCAAAACCAGCTGATGAGCTTTGAACGGCGCTTAGAAGAGCTGCAGACTCTCA
AAGGAACTATTTCTATTAACCAACCCTCTGCTCATATTGCTAGTTCTAACCCACATCAGTCTCGATCAGCCAAAACTCATGGCAGCAACTATCAGAAAGGAGGCAGAGGA
CGTGGGAGAGGTAGGTTTTCTAGAGGAAATAACAAACCAATCTGTCAGGTTTGTGGAAAAATTGGGCATACTGCAGCTGTCTGTTACTCTCGGTTCGACAGGGACATCAA
CAACCAGAATACTAGAAATGCTCAGAACAACCCTCAAACCAACAACAATCATGGAGGAAATGAGGCTATGTTGGCCACTCCTGAACATGTCAATGATCAAGCTTGGTATT
TTGATAGTGGGGCAAGTAGCCACCTAACCTCTGACTTGGGTAATCTGTCCATCAGATCAGGCTATACAGGACAAGAGCACGGGGAAGGTTCTTCTTCGAGGGAGCCTTAA

mRNA sequence

Show/hide mRNA sequence

AAATGGTTGAGTATCTTACTTTAATGAAAAGTTACTCTGACAACTTGTATTTGGCAGGTTCTCCTCTAGATAACAAGGAACTTATCTCCTATGTTATCTCTGGCCTGGAT
GAGGAATACACACCCATAGTGGTGGTGATTCAGAATCAGGAGATGTCTTTCAATCAGGTTCAAAACCAGCTGATGAGCTTTGAACGGCGCTTAGAAGAGCTGCAGACTCT
CAAAGGAACTATTTCTATTAACCAACCCTCTGCTCATATTGCTAGTTCTAACCCACATCAGTCTCGATCAGCCAAAACTCATGGCAGCAACTATCAGAAAGGAGGCAGAG
GACGTGGGAGAGGTAGGTTTTCTAGAGGAAATAACAAACCAATCTGTCAGGTTTGTGGAAAAATTGGGCATACTGCAGCTGTCTGTTACTCTCGGTTCGACAGGGACATC
AACAACCAGAATACTAGAAATGCTCAGAACAACCCTCAAACCAACAACAATCATGGAGGAAATGAGGCTATGTTGGCCACTCCTGAACATGTCAATGATCAAGCTTGGTA
TTTTGATAGTGGGGCAAGTAGCCACCTAACCTCTGACTTGGGTAATCTGTCCATCAGATCAGGCTATACAGGACAAGAGCACGGGGAAGGTTCTTCTTCGAGGGAGCCTT
AAAGATGGACTCTACAAGCTTGGATCGGTAGCAGCCTCTTCTCATCAAATAGATCAAGTAGCTCCAGATGTTAAGTTTGTTTTTGTGACCTTTGTATCTAGCTTAAATTC
TAAAATTCAG

Protein sequence

Show/hide protein sequence

MVEYLTLMKSYSDNLYLAGSPLDNKELISYVISGLDEEYTPIVVVIQNQEMSFNQVQNQLMSFERRLEELQTLKGTISINQPSAHIASSNPHQSRSAKTHGSNYQKGGRG
RGRGRFSRGNNKPICQVCGKIGHTAAVCYSRFDRDINNQNTRNAQNNPQTNNNHGGNEAMLATPEHVNDQAWYFDSGASSHLTSDLGNLSIRSGYTGQEHGEGSSSREP

Sed0017135 (gene) of Chayote v1 genome