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Sed0017192 (gene) of Chayote v1 genome

Gene IDSed0017192
OrganismSechium edule (Chayote v1)
DescriptionMADS-box transcription factor
Genome locationLG09:2341511..2341786
RNA-Seq ExpressionSed0017192
SyntenySed0017192
Gene Ontology termsGO:0045944 - positive regulation of transcription by RNA polymerase II (biological process)
GO:0005634 - nucleus (cellular component)
GO:0000978 - RNA polymerase II proximal promoter sequence-specific DNA binding (molecular function)
GO:0000981 - DNA-binding transcription factor activity, RNA polymerase II-specific (molecular function)
GO:0046983 - protein dimerization activity (molecular function)
InterPro domainsIPR002100 - Transcription factor, MADS-box
IPR036879 - Transcription factor, MADS-box superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0033595.1 MADS-box transcription factor 17-like [Cucumis melo var. makuwa]3.2e-1161.29Show/hide
Query:  MNKAIELSVLCEADVGLIMFSNTGKLYEFGTTDMNNILERYQQQCYISGRPNTSRDEYAMKV
        + KA ELSVLC+ DV LI+FS  GKL+EFG+TDMN ILERY QQCY SG   T+ DE  +++
Subjt:  MNKAIELSVLCEADVGLIMFSNTGKLYEFGTTDMNNILERYQQQCYISGRPNTSRDEYAMKV

KAE8022458.1 hypothetical protein FH972_008256 [Carpinus fangiana]9.2e-1158.46Show/hide
Query:  MNKAIELSVLCEADVGLIMFSNTGKLYEFGTTDMNNILERYQQQCYISGRPNTSRDEYAMKVFSF
        + KA ELSVLCEA+V LI+FSN GKL EFG+TD+N +LERY+Q CY   R N   DE      SF
Subjt:  MNKAIELSVLCEADVGLIMFSNTGKLYEFGTTDMNNILERYQQQCYISGRPNTSRDEYAMKVFSF

XP_008439145.1 PREDICTED: MADS-box transcription factor 17-like [Cucumis melo]3.2e-1161.29Show/hide
Query:  MNKAIELSVLCEADVGLIMFSNTGKLYEFGTTDMNNILERYQQQCYISGRPNTSRDEYAMKV
        + KA ELSVLC+ DV LI+FS  GKL+EFG+TDMN ILERY QQCY SG   T+ DE  +++
Subjt:  MNKAIELSVLCEADVGLIMFSNTGKLYEFGTTDMNNILERYQQQCYISGRPNTSRDEYAMKV

XP_011651126.1 agamous-like MADS-box protein MADS3 [Cucumis sativus]3.2e-1161.29Show/hide
Query:  MNKAIELSVLCEADVGLIMFSNTGKLYEFGTTDMNNILERYQQQCYISGRPNTSRDEYAMKV
        + KA ELSVLC+ DV LI+FS  GKL+EFG+TDMN ILERY QQCY SG   T+ DE  +++
Subjt:  MNKAIELSVLCEADVGLIMFSNTGKLYEFGTTDMNNILERYQQQCYISGRPNTSRDEYAMKV

XP_038886448.1 agamous-like MADS-box protein MADS3 [Benincasa hispida]5.4e-1159.68Show/hide
Query:  MNKAIELSVLCEADVGLIMFSNTGKLYEFGTTDMNNILERYQQQCYISGRPNTSRDEYAMKV
        + KA ELSVLC+ DV LI+FS+ GKL+EFG+TDMN ILERY Q+CY SG  +T+ DE  +++
Subjt:  MNKAIELSVLCEADVGLIMFSNTGKLYEFGTTDMNNILERYQQQCYISGRPNTSRDEYAMKV

TrEMBL top hitse value%identityAlignment
A0A0B4U5D5 MADS-box protein6.4e-1070.83Show/hide
Query:  MNKAIELSVLCEADVGLIMFSNTGKLYEFGTTDMNNILERYQQQCYIS
        + KA ELSVLC+A+VGLI+FS+ GKLYEFG+TD+N ILERY+Q CY S
Subjt:  MNKAIELSVLCEADVGLIMFSNTGKLYEFGTTDMNNILERYQQQCYIS

A0A1S3AY43 MADS-box transcription factor 17-like1.5e-1161.29Show/hide
Query:  MNKAIELSVLCEADVGLIMFSNTGKLYEFGTTDMNNILERYQQQCYISGRPNTSRDEYAMKV
        + KA ELSVLC+ DV LI+FS  GKL+EFG+TDMN ILERY QQCY SG   T+ DE  +++
Subjt:  MNKAIELSVLCEADVGLIMFSNTGKLYEFGTTDMNNILERYQQQCYISGRPNTSRDEYAMKV

A0A5D3DF02 MADS-box transcription factor 17-like1.5e-1161.29Show/hide
Query:  MNKAIELSVLCEADVGLIMFSNTGKLYEFGTTDMNNILERYQQQCYISGRPNTSRDEYAMKV
        + KA ELSVLC+ DV LI+FS  GKL+EFG+TDMN ILERY QQCY SG   T+ DE  +++
Subjt:  MNKAIELSVLCEADVGLIMFSNTGKLYEFGTTDMNNILERYQQQCYISGRPNTSRDEYAMKV

A0A5N6QYX5 Uncharacterized protein4.5e-1158.46Show/hide
Query:  MNKAIELSVLCEADVGLIMFSNTGKLYEFGTTDMNNILERYQQQCYISGRPNTSRDEYAMKVFSF
        + KA ELSVLCEA+V LI+FSN GKL EFG+TD+N +LERY+Q CY   R N   DE      SF
Subjt:  MNKAIELSVLCEADVGLIMFSNTGKLYEFGTTDMNNILERYQQQCYISGRPNTSRDEYAMKVFSF

A0A6J1E935 MADS-box transcription factor 6-like4.9e-1067.35Show/hide
Query:  MNKAIELSVLCEADVGLIMFSNTGKLYEFGTTDMNNILERYQQQCYISG
        + KA ELSVLC+ DV LIMFS+ GKL+EFG+TDMN ILERY  +CY +G
Subjt:  MNKAIELSVLCEADVGLIMFSNTGKLYEFGTTDMNNILERYQQQCYISG

SwissProt top hitse value%identityAlignment
O22456 Developmental protein SEPALLATA 32.0e-0851.52Show/hide
Query:  MNKAIELSVLCEADVGLIMFSNTGKLYEF-GTTDMNNILERYQQQCYISGRPNT-SRDEYAMKVFS
        + KA ELSVLC+A+V LI+FSN GKLYEF  ++ M   LERYQ+  Y +  PN  SR+  A+++ S
Subjt:  MNKAIELSVLCEADVGLIMFSNTGKLYEF-GTTDMNNILERYQQQCYISGRPNT-SRDEYAMKVFS

Q6EU39 MADS-box transcription factor 61.4e-0952.63Show/hide
Query:  MNKAIELSVLCEADVGLIMFSNTGKLYEFGTTDMNNILERYQQQCYISGRPNTSRDE
        + KA ELSVLC+A+V LI+FS+ GKLYEFG+  +   LERYQ  CY +   N +  E
Subjt:  MNKAIELSVLCEADVGLIMFSNTGKLYEFGTTDMNNILERYQQQCYISGRPNTSRDE

Q7XUN2 MADS-box transcription factor 174.0e-0951.85Show/hide
Query:  MNKAIELSVLCEADVGLIMFSNTGKLYEFGTTDMNNILERYQQQCYISGRPNTS
        + KA ELSVLC+A+V LI+FS+ GKLYEFG+  +N  LE+Y   CY +   N++
Subjt:  MNKAIELSVLCEADVGLIMFSNTGKLYEFGTTDMNNILERYQQQCYISGRPNTS

Q84NC5 MADS-box transcription factor 251.2e-0860.47Show/hide
Query:  MNKAIELSVLCEADVGLIMFSNTGKLYEFGTTDMNNILERYQQ
        M KA EL++LC+ADVGLI+FS TG+LY+F ++ M +I+ERYQ+
Subjt:  MNKAIELSVLCEADVGLIMFSNTGKLYEFGTTDMNNILERYQQ

Q8LLR1 Agamous-like MADS-box protein MADS34.0e-0960.87Show/hide
Query:  MNKAIELSVLCEADVGLIMFSNTGKLYEFGTTDMNNILERYQQQCY
        + KA ELSVLC+A+V LI+FS+ GKLYEFG+      LERYQ+ CY
Subjt:  MNKAIELSVLCEADVGLIMFSNTGKLYEFGTTDMNNILERYQQQCY

Arabidopsis top hitse value%identityAlignment
AT1G24260.1 K-box region and MADS-box transcription factor family protein5.4e-0953.45Show/hide
Query:  MNKAIELSVLCEADVGLIMFSNTGKLYEF-GTTDMNNILERYQQQCYISGRPNTSRDE
        + KA ELSVLC+A+V LI+FSN GKLYEF  ++ M   LERYQ+  Y +  PN    E
Subjt:  MNKAIELSVLCEADVGLIMFSNTGKLYEF-GTTDMNNILERYQQQCYISGRPNTSRDE

AT1G24260.2 K-box region and MADS-box transcription factor family protein1.4e-0951.52Show/hide
Query:  MNKAIELSVLCEADVGLIMFSNTGKLYEF-GTTDMNNILERYQQQCYISGRPNT-SRDEYAMKVFS
        + KA ELSVLC+A+V LI+FSN GKLYEF  ++ M   LERYQ+  Y +  PN  SR+  A+++ S
Subjt:  MNKAIELSVLCEADVGLIMFSNTGKLYEF-GTTDMNNILERYQQQCYISGRPNT-SRDEYAMKVFS

AT1G24260.3 K-box region and MADS-box transcription factor family protein1.4e-0951.52Show/hide
Query:  MNKAIELSVLCEADVGLIMFSNTGKLYEF-GTTDMNNILERYQQQCYISGRPNT-SRDEYAMKVFS
        + KA ELSVLC+A+V LI+FSN GKLYEF  ++ M   LERYQ+  Y +  PN  SR+  A+++ S
Subjt:  MNKAIELSVLCEADVGLIMFSNTGKLYEF-GTTDMNNILERYQQQCYISGRPNT-SRDEYAMKVFS

AT2G45650.1 AGAMOUS-like 62.4e-0949.12Show/hide
Query:  MNKAIELSVLCEADVGLIMFSNTGKLYEFGTTDMNNILERYQQQCYISGRPNTSRDE
        + KA ELSVLC+A+V LI+FS+ GKLYEFG+  + + +ERY  +CY     N   +E
Subjt:  MNKAIELSVLCEADVGLIMFSNTGKLYEFGTTDMNNILERYQQQCYISGRPNTSRDE

AT3G02310.1 K-box region and MADS-box transcription factor family protein1.2e-0861.7Show/hide
Query:  MNKAIELSVLCEADVGLIMFSNTGKLYEF-GTTDMNNILERYQQQCY
        + KA ELSVLC+A+V LI+FSN GKLYEF  T++M   LERYQ+  Y
Subjt:  MNKAIELSVLCEADVGLIMFSNTGKLYEF-GTTDMNNILERYQQQCY


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAATAAAGCTATTGAGTTATCTGTGCTTTGTGAAGCTGATGTTGGTCTTATTATGTTCTCAAACACTGGAAAACTCTATGAATTTGGAACCACTGATATGAACAACAT
ACTTGAAAGGTACCAACAACAATGCTACATCTCTGGAAGACCAAATACCAGTCGTGATGAATATGCTATGAAGGTATTTTCATTTTTTTATGGATCCAATTTGAAAAAGA
TTCATCTTTTTTTAAAAAAATTTAAGGCAGTTTCAAGGAAGGGTTGTTCAAAATGA
mRNA sequenceShow/hide mRNA sequence
ATGAATAAAGCTATTGAGTTATCTGTGCTTTGTGAAGCTGATGTTGGTCTTATTATGTTCTCAAACACTGGAAAACTCTATGAATTTGGAACCACTGATATGAACAACAT
ACTTGAAAGGTACCAACAACAATGCTACATCTCTGGAAGACCAAATACCAGTCGTGATGAATATGCTATGAAGGTATTTTCATTTTTTTATGGATCCAATTTGAAAAAGA
TTCATCTTTTTTTAAAAAAATTTAAGGCAGTTTCAAGGAAGGGTTGTTCAAAATGA
Protein sequenceShow/hide protein sequence
MNKAIELSVLCEADVGLIMFSNTGKLYEFGTTDMNNILERYQQQCYISGRPNTSRDEYAMKVFSFFYGSNLKKIHLFLKKFKAVSRKGCSK