; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Sed0017195 (gene) of Chayote v1 genome

Gene IDSed0017195
OrganismSechium edule (Chayote v1)
DescriptionRetrovirus-related Pol polyprotein from transposon RE1
Genome locationLG10:30944194..30945344
RNA-Seq ExpressionSed0017195
SyntenySed0017195
Gene Ontology termsGO:0006259 - DNA metabolic process (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0016779 - nucleotidyltransferase activity (molecular function)
InterPro domainsIPR013103 - Reverse transcriptase, RNA-dependent DNA polymerase


Homology Show/hide homology
GenBank top hitse value%identityAlignment
CAN71553.1 hypothetical protein VITISV_034738 [Vitis vinifera]5.7e-4858.18Show/hide
Query:  MLTRSKLGTFQPKAWLSSTPQSSKLVEPTSYKKALTCPEWKDAMDSEYQALINNNTWSLVPFPAGHRSVGCKWVHRLKMHLNGSIDKHKARLVAKGFTQT
        M+TRSK G  + K +L+S       +EP + K+AL  P WK AM+ EYQAL+ N TWSLVP P+  + +GCKWV +LK   NGSID++KARLVA+GF QT
Subjt:  MLTRSKLGTFQPKAWLSSTPQSSKLVEPTSYKKALTCPEWKDAMDSEYQALINNNTWSLVPFPAGHRSVGCKWVHRLKMHLNGSIDKHKARLVAKGFTQT

Query:  YGLDYFDTFSPVAKPTTVRLILSLAVNFNWPIKQLDVNNVFLNEELNEEVFMTQPPGYIDKVNPS
        YG+D+F+TFSPV KP T+RL+LS+AV+ NWPIKQLDV+N FLN +L E+VFM QPPG+ D   P+
Subjt:  YGLDYFDTFSPVAKPTTVRLILSLAVNFNWPIKQLDVNNVFLNEELNEEVFMTQPPGYIDKVNPS

CAN75478.1 hypothetical protein VITISV_020209 [Vitis vinifera]1.8e-4656.97Show/hide
Query:  MLTRSKLGTFQPKAWLSSTPQSSKLVEPTSYKKALTCPEWKDAMDSEYQALINNNTWSLVPFPAGHRSVGCKWVHRLKMHLNGSIDKHKARLVAKGFTQT
        M+TRSK G  + K +L+S       +EP + K+ L  P WK AM+ EYQAL+ N TWSLVP P+  + + CKWV +LK   NGSID++KARLVA+GF QT
Subjt:  MLTRSKLGTFQPKAWLSSTPQSSKLVEPTSYKKALTCPEWKDAMDSEYQALINNNTWSLVPFPAGHRSVGCKWVHRLKMHLNGSIDKHKARLVAKGFTQT

Query:  YGLDYFDTFSPVAKPTTVRLILSLAVNFNWPIKQLDVNNVFLNEELNEEVFMTQPPGYIDKVNPS
        YG+D+F+TFSPV KP T+RL+LS+AV+ NWPIKQLDV+N FLN +L E+VFM QPPG+ D   P+
Subjt:  YGLDYFDTFSPVAKPTTVRLILSLAVNFNWPIKQLDVNNVFLNEELNEEVFMTQPPGYIDKVNPS

PRQ54238.1 putative RNA-directed DNA polymerase [Rosa chinensis]6.9e-4655.95Show/hide
Query:  MLTRSKLGTFQPKAW---LSSTPQSSKLVEPTSYKKALTCPEWKDAMDSEYQALINNNTWSLVPFPAGHRSVGCKWVHRLKMHLNGSIDKHKARLVAKGF
        MLTRSK G  + KA+   LSS    S L EP S+K AL  P WK AM  EY ALIN NTW+LVP P     V CKW+ ++K + +GSI +HKARLVA+GF
Subjt:  MLTRSKLGTFQPKAW---LSSTPQSSKLVEPTSYKKALTCPEWKDAMDSEYQALINNNTWSLVPFPAGHRSVGCKWVHRLKMHLNGSIDKHKARLVAKGF

Query:  TQTYGLDYFDTFSPVAKPTTVRLILSLAVNFNWPIKQLDVNNVFLNEELNEEVFMTQPPGYIDKVNPS
        +Q YG+DY +T+SPV + TTVR+ILS+A ++ WP+ QLDV N FL+  LNEEV+MTQPPG+ D  +P+
Subjt:  TQTYGLDYFDTFSPVAKPTTVRLILSLAVNFNWPIKQLDVNNVFLNEELNEEVFMTQPPGYIDKVNPS

RVW78327.1 7-deoxyloganetin glucosyltransferase [Vitis vinifera]5.7e-4858.18Show/hide
Query:  MLTRSKLGTFQPKAWLSSTPQSSKLVEPTSYKKALTCPEWKDAMDSEYQALINNNTWSLVPFPAGHRSVGCKWVHRLKMHLNGSIDKHKARLVAKGFTQT
        M+TRSK G  + K +L+S       +EP + K+AL  P WK AM+ EYQAL+ N TWSLVP P+  + +GCKWV +LK   NGSID++KARLVA+GF QT
Subjt:  MLTRSKLGTFQPKAWLSSTPQSSKLVEPTSYKKALTCPEWKDAMDSEYQALINNNTWSLVPFPAGHRSVGCKWVHRLKMHLNGSIDKHKARLVAKGFTQT

Query:  YGLDYFDTFSPVAKPTTVRLILSLAVNFNWPIKQLDVNNVFLNEELNEEVFMTQPPGYIDKVNPS
        YG+D+F+TFSPV KP T+RL+LS+AV+ NWPIKQLDV+N FLN +L E+VFM QPPG+ D   P+
Subjt:  YGLDYFDTFSPVAKPTTVRLILSLAVNFNWPIKQLDVNNVFLNEELNEEVFMTQPPGYIDKVNPS

XP_030501199.1 ARF guanine-nucleotide exchange factor GNL2 [Cannabis sativa]4.1e-4656.63Show/hide
Query:  MLTRSKLGTFQPKAWLSSTPQSSKLVEPTSYKKALTCPEWKDAMDSEYQALINNNTWSLVPFPAGHRSVGCKWVHRLKMHLNGSIDKHKARLVAKGFTQT
        M+TR+K+GT+ PK  L S         P S   AL  P W  AMD+E  AL    TW LVP P G R++GCKWVHR+K +  GS+DK+K++LVAKGF Q 
Subjt:  MLTRSKLGTFQPKAWLSSTPQSSKLVEPTSYKKALTCPEWKDAMDSEYQALINNNTWSLVPFPAGHRSVGCKWVHRLKMHLNGSIDKHKARLVAKGFTQT

Query:  YGLDYFDTFSPVAKPTTVRLILSLAVNFNWPIKQLDVNNVFLNEELNEEVFMTQPPGYIDKVNPSM
        YG D+ +TFSPV KPTT+R IL++AV   W I+QLDVNN FLN +L EEVFMTQPPGY+DK +P M
Subjt:  YGLDYFDTFSPVAKPTTVRLILSLAVNFNWPIKQLDVNNVFLNEELNEEVFMTQPPGYIDKVNPSM

TrEMBL top hitse value%identityAlignment
A0A2P6S6E1 Putative RNA-directed DNA polymerase3.3e-4655.95Show/hide
Query:  MLTRSKLGTFQPKAW---LSSTPQSSKLVEPTSYKKALTCPEWKDAMDSEYQALINNNTWSLVPFPAGHRSVGCKWVHRLKMHLNGSIDKHKARLVAKGF
        MLTRSK G  + KA+   LSS    S L EP S+K AL  P WK AM  EY ALIN NTW+LVP P     V CKW+ ++K + +GSI +HKARLVA+GF
Subjt:  MLTRSKLGTFQPKAW---LSSTPQSSKLVEPTSYKKALTCPEWKDAMDSEYQALINNNTWSLVPFPAGHRSVGCKWVHRLKMHLNGSIDKHKARLVAKGF

Query:  TQTYGLDYFDTFSPVAKPTTVRLILSLAVNFNWPIKQLDVNNVFLNEELNEEVFMTQPPGYIDKVNPS
        +Q YG+DY +T+SPV + TTVR+ILS+A ++ WP+ QLDV N FL+  LNEEV+MTQPPG+ D  +P+
Subjt:  TQTYGLDYFDTFSPVAKPTTVRLILSLAVNFNWPIKQLDVNNVFLNEELNEEVFMTQPPGYIDKVNPS

A0A438H229 7-deoxyloganetin glucosyltransferase2.7e-4858.18Show/hide
Query:  MLTRSKLGTFQPKAWLSSTPQSSKLVEPTSYKKALTCPEWKDAMDSEYQALINNNTWSLVPFPAGHRSVGCKWVHRLKMHLNGSIDKHKARLVAKGFTQT
        M+TRSK G  + K +L+S       +EP + K+AL  P WK AM+ EYQAL+ N TWSLVP P+  + +GCKWV +LK   NGSID++KARLVA+GF QT
Subjt:  MLTRSKLGTFQPKAWLSSTPQSSKLVEPTSYKKALTCPEWKDAMDSEYQALINNNTWSLVPFPAGHRSVGCKWVHRLKMHLNGSIDKHKARLVAKGFTQT

Query:  YGLDYFDTFSPVAKPTTVRLILSLAVNFNWPIKQLDVNNVFLNEELNEEVFMTQPPGYIDKVNPS
        YG+D+F+TFSPV KP T+RL+LS+AV+ NWPIKQLDV+N FLN +L E+VFM QPPG+ D   P+
Subjt:  YGLDYFDTFSPVAKPTTVRLILSLAVNFNWPIKQLDVNNVFLNEELNEEVFMTQPPGYIDKVNPS

A5AQ04 Integrase catalytic domain-containing protein2.7e-4858.18Show/hide
Query:  MLTRSKLGTFQPKAWLSSTPQSSKLVEPTSYKKALTCPEWKDAMDSEYQALINNNTWSLVPFPAGHRSVGCKWVHRLKMHLNGSIDKHKARLVAKGFTQT
        M+TRSK G  + K +L+S       +EP + K+AL  P WK AM+ EYQAL+ N TWSLVP P+  + +GCKWV +LK   NGSID++KARLVA+GF QT
Subjt:  MLTRSKLGTFQPKAWLSSTPQSSKLVEPTSYKKALTCPEWKDAMDSEYQALINNNTWSLVPFPAGHRSVGCKWVHRLKMHLNGSIDKHKARLVAKGFTQT

Query:  YGLDYFDTFSPVAKPTTVRLILSLAVNFNWPIKQLDVNNVFLNEELNEEVFMTQPPGYIDKVNPS
        YG+D+F+TFSPV KP T+RL+LS+AV+ NWPIKQLDV+N FLN +L E+VFM QPPG+ D   P+
Subjt:  YGLDYFDTFSPVAKPTTVRLILSLAVNFNWPIKQLDVNNVFLNEELNEEVFMTQPPGYIDKVNPS

A5BK17 Integrase catalytic domain-containing protein7.5e-4654.55Show/hide
Query:  MLTRSKLGTFQPKAWLSSTPQSSKLVEPTSYKKALTCPEWKDAMDSEYQALINNNTWSLVPFPAGHRSVGCKWVHRLKMHLNGSIDKHKARLVAKGFTQT
        M+TRSK G F+PKA+L ST        PTS  +AL    WK AM  EY AL+ NNTW LVP P   + +GCKWV ++K + +G+I+K+KARLVAKGF Q 
Subjt:  MLTRSKLGTFQPKAWLSSTPQSSKLVEPTSYKKALTCPEWKDAMDSEYQALINNNTWSLVPFPAGHRSVGCKWVHRLKMHLNGSIDKHKARLVAKGFTQT

Query:  YGLDYFDTFSPVAKPTTVRLILSLAVNFNWPIKQLDVNNVFLNEELNEEVFMTQPPGYIDKVNPS
         G D+ +TFSPV KPTT+R++L++A+N  W ++QLDVNN FLN +L+E++FM QP G+ID VNP+
Subjt:  YGLDYFDTFSPVAKPTTVRLILSLAVNFNWPIKQLDVNNVFLNEELNEEVFMTQPPGYIDKVNPS

A5CAE5 Reverse transcriptase Ty1/copia-type domain-containing protein8.8e-4756.97Show/hide
Query:  MLTRSKLGTFQPKAWLSSTPQSSKLVEPTSYKKALTCPEWKDAMDSEYQALINNNTWSLVPFPAGHRSVGCKWVHRLKMHLNGSIDKHKARLVAKGFTQT
        M+TRSK G  + K +L+S       +EP + K+ L  P WK AM+ EYQAL+ N TWSLVP P+  + + CKWV +LK   NGSID++KARLVA+GF QT
Subjt:  MLTRSKLGTFQPKAWLSSTPQSSKLVEPTSYKKALTCPEWKDAMDSEYQALINNNTWSLVPFPAGHRSVGCKWVHRLKMHLNGSIDKHKARLVAKGFTQT

Query:  YGLDYFDTFSPVAKPTTVRLILSLAVNFNWPIKQLDVNNVFLNEELNEEVFMTQPPGYIDKVNPS
        YG+D+F+TFSPV KP T+RL+LS+AV+ NWPIKQLDV+N FLN +L E+VFM QPPG+ D   P+
Subjt:  YGLDYFDTFSPVAKPTTVRLILSLAVNFNWPIKQLDVNNVFLNEELNEEVFMTQPPGYIDKVNPS

SwissProt top hitse value%identityAlignment
P04146 Copia protein8.5e-2342.37Show/hide
Query:  WKDAMDSEYQALINNNTWSLVPFPAGHRSVGCKWVHRLKMHLNGSIDKHKARLVAKGFTQTYGLDYFDTFSPVAKPTTVRLILSLAVNFNWPIKQLDVNN
        W++A+++E  A   NNTW++   P     V  +WV  +K +  G+  ++KARLVA+GFTQ Y +DY +TF+PVA+ ++ R ILSL + +N  + Q+DV  
Subjt:  WKDAMDSEYQALINNNTWSLVPFPAGHRSVGCKWVHRLKMHLNGSIDKHKARLVAKGFTQTYGLDYFDTFSPVAKPTTVRLILSLAVNFNWPIKQLDVNN

Query:  VFLNEELNEEVFMTQPPG
         FLN  L EE++M  P G
Subjt:  VFLNEELNEEVFMTQPPG

P10978 Retrovirus-related Pol polyprotein from transposon TNT 1-946.3e-2644.44Show/hide
Query:  EPTSYKKALTCPEWKD---AMDSEYQALINNNTWSLVPFPAGHRSVGCKWVHRLKMHLNGSIDKHKARLVAKGFTQTYGLDYFDTFSPVAKPTTVRLILS
        EP S K+ L+ PE      AM  E ++L  N T+ LV  P G R + CKWV +LK   +  + ++KARLV KGF Q  G+D+ + FSPV K T++R ILS
Subjt:  EPTSYKKALTCPEWKD---AMDSEYQALINNNTWSLVPFPAGHRSVGCKWVHRLKMHLNGSIDKHKARLVAKGFTQTYGLDYFDTFSPVAKPTTVRLILS

Query:  LAVNFNWPIKQLDVNNVFLNEELNEEVFMTQPPGY
        LA + +  ++QLDV   FL+ +L EE++M QP G+
Subjt:  LAVNFNWPIKQLDVNNVFLNEELNEEVFMTQPPGY

P92520 Uncharacterized mitochondrial protein AtMg008205.0e-2344.68Show/hide
Query:  MLTRSKLG--TFQPKAWLSSTPQSSKLVEPTSYKKALTCPEWKDAMDSEYQALINNNTWSLVPFPAGHRSVGCKWVHRLKMHLNGSIDKHKARLVAKGFT
        MLTRSK G     PK  L+ T    K  EP S   AL  P W  AM  E  AL  N TW LVP P     +GCKWV + K+H +G++D+ KARLVAKGF 
Subjt:  MLTRSKLG--TFQPKAWLSSTPQSSKLVEPTSYKKALTCPEWKDAMDSEYQALINNNTWSLVPFPAGHRSVGCKWVHRLKMHLNGSIDKHKARLVAKGFT

Query:  QTYGLDYFDTFSPVAKPTTVRLILSLA------VNFNWPIK
        Q  G+ + +T+SPV +  T+R IL++A       + NW  K
Subjt:  QTYGLDYFDTFSPVAKPTTVRLILSLA------VNFNWPIK

Q94HW2 Retrovirus-related Pol polyprotein from transposon RE16.5e-3946.07Show/hide
Query:  MLTRSKLGTFQPKAWLSSTPQSSKLVEPTSYKKALTCPEWKDAMDSEYQALINNNTWSLVPFPAGHRS-VGCKWVHRLKMHLNGSIDKHKARLVAKGFTQ
        M TR+K G  +P    S     +   EP +  +AL    W++AM SE  A I N+TW LVP P  H + VGC+W+   K + +GS++++KARLVAKG+ Q
Subjt:  MLTRSKLGTFQPKAWLSSTPQSSKLVEPTSYKKALTCPEWKDAMDSEYQALINNNTWSLVPFPAGHRS-VGCKWVHRLKMHLNGSIDKHKARLVAKGFTQ

Query:  TYGLDYFDTFSPVAKPTTVRLILSLAVNFNWPIKQLDVNNVFLNEELNEEVFMTQPPGYIDKVNPSMSIPSRANDYSL
          GLDY +TFSPV K T++R++L +AV+ +WPI+QLDVNN FL   L ++V+M+QPPG+IDK  P+     R   Y L
Subjt:  TYGLDYFDTFSPVAKPTTVRLILSLAVNFNWPIKQLDVNNVFLNEELNEEVFMTQPPGYIDKVNPSMSIPSRANDYSL

Q9ZT94 Retrovirus-related Pol polyprotein from transposon RE22.7e-3744.94Show/hide
Query:  MLTRSKLGTFQPKAWLSSTPQSSKLVEPTSYKKALTCPEWKDAMDSEYQALINNNTWSLVPFPAGHRS-VGCKWVHRLKMHLNGSIDKHKARLVAKGFTQ
        M TR+K G  +P    S     +   EP +  +A+    W+ AM SE  A I N+TW LVP P    + VGC+W+   K + +GS++++KARLVAKG+ Q
Subjt:  MLTRSKLGTFQPKAWLSSTPQSSKLVEPTSYKKALTCPEWKDAMDSEYQALINNNTWSLVPFPAGHRS-VGCKWVHRLKMHLNGSIDKHKARLVAKGFTQ

Query:  TYGLDYFDTFSPVAKPTTVRLILSLAVNFNWPIKQLDVNNVFLNEELNEEVFMTQPPGYIDKVNPSMSIPSRANDYSL
          GLDY +TFSPV K T++R++L +AV+ +WPI+QLDVNN FL   L +EV+M+QPPG++DK  P      R   Y L
Subjt:  TYGLDYFDTFSPVAKPTTVRLILSLAVNFNWPIKQLDVNNVFLNEELNEEVFMTQPPGYIDKVNPSMSIPSRANDYSL

Arabidopsis top hitse value%identityAlignment
AT4G23160.1 cysteine-rich RLK (RECEPTOR-like protein kinase) 81.7e-3443.06Show/hide
Query:  SKLVEPTSYKKALTCPEWKDAMDSEYQALINNNTWSLVPFPAGHRSVGCKWVHRLKMHLNGSIDKHKARLVAKGFTQTYGLDYFDTFSPVAKPTTVRLIL
        +K  EP++Y +A     W  AMD E  A+   +TW +   P   + +GCKWV+++K + +G+I+++KARLVAKG+TQ  G+D+ +TFSPV K T+V+LIL
Subjt:  SKLVEPTSYKKALTCPEWKDAMDSEYQALINNNTWSLVPFPAGHRSVGCKWVHRLKMHLNGSIDKHKARLVAKGFTQTYGLDYFDTFSPVAKPTTVRLIL

Query:  SLAVNFNWPIKQLDVNNVFLNEELNEEVFMTQPPGYIDKVNPSM
        +++  +N+ + QLD++N FLN +L+EE++M  PPGY  +   S+
Subjt:  SLAVNFNWPIKQLDVNNVFLNEELNEEVFMTQPPGYIDKVNPSM

ATMG00820.1 Reverse transcriptase (RNA-dependent DNA polymerase)3.6e-2444.68Show/hide
Query:  MLTRSKLG--TFQPKAWLSSTPQSSKLVEPTSYKKALTCPEWKDAMDSEYQALINNNTWSLVPFPAGHRSVGCKWVHRLKMHLNGSIDKHKARLVAKGFT
        MLTRSK G     PK  L+ T    K  EP S   AL  P W  AM  E  AL  N TW LVP P     +GCKWV + K+H +G++D+ KARLVAKGF 
Subjt:  MLTRSKLG--TFQPKAWLSSTPQSSKLVEPTSYKKALTCPEWKDAMDSEYQALINNNTWSLVPFPAGHRSVGCKWVHRLKMHLNGSIDKHKARLVAKGFT

Query:  QTYGLDYFDTFSPVAKPTTVRLILSLA------VNFNWPIK
        Q  G+ + +T+SPV +  T+R IL++A       + NW  K
Subjt:  QTYGLDYFDTFSPVAKPTTVRLILSLA------VNFNWPIK


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCTCACTCGTTCAAAACTTGGCACATTCCAACCAAAAGCTTGGCTCTCCTCTACTCCGCAATCTTCCAAACTTGTTGAACCGACATCTTACAAGAAGGCGTTGACTTG
TCCTGAGTGGAAAGATGCAATGGATAGCGAATATCAAGCTCTTATCAACAACAACACGTGGTCATTGGTTCCCTTCCCTGCTGGTCATCGATCTGTTGGTTGTAAATGGG
TGCATCGCCTCAAGATGCATCTGAATGGTTCAATTGACAAGCATAAGGCCCGTTTAGTTGCCAAAGGATTCACTCAAACATATGGGCTTGATTACTTTGATACTTTTAGT
CCTGTTGCTAAGCCGACTACAGTTCGTCTCATTTTATCTTTGGCAGTCAACTTCAATTGGCCGATAAAGCAGCTTGATGTAAACAATGTTTTCCTGAATGAGGAATTAAA
CGAGGAGGTGTTCATGACTCAACCACCTGGCTACATTGACAAAGTCAACCCAAGCATGTCAATTCCTTCACGCGCCAACGACTACTCATTGGCTTGCAGTCAAGCACATA
TTACGCTACTTAAAGGGGTCTATTTTTCATGGGTTGCGTTTAGCTCCGTCCTCAACATCCCTCATTTGTTATACTGA
mRNA sequenceShow/hide mRNA sequence
ATGCTCACTCGTTCAAAACTTGGCACATTCCAACCAAAAGCTTGGCTCTCCTCTACTCCGCAATCTTCCAAACTTGTTGAACCGACATCTTACAAGAAGGCGTTGACTTG
TCCTGAGTGGAAAGATGCAATGGATAGCGAATATCAAGCTCTTATCAACAACAACACGTGGTCATTGGTTCCCTTCCCTGCTGGTCATCGATCTGTTGGTTGTAAATGGG
TGCATCGCCTCAAGATGCATCTGAATGGTTCAATTGACAAGCATAAGGCCCGTTTAGTTGCCAAAGGATTCACTCAAACATATGGGCTTGATTACTTTGATACTTTTAGT
CCTGTTGCTAAGCCGACTACAGTTCGTCTCATTTTATCTTTGGCAGTCAACTTCAATTGGCCGATAAAGCAGCTTGATGTAAACAATGTTTTCCTGAATGAGGAATTAAA
CGAGGAGGTGTTCATGACTCAACCACCTGGCTACATTGACAAAGTCAACCCAAGCATGTCAATTCCTTCACGCGCCAACGACTACTCATTGGCTTGCAGTCAAGCACATA
TTACGCTACTTAAAGGGGTCTATTTTTCATGGGTTGCGTTTAGCTCCGTCCTCAACATCCCTCATTTGTTATACTGA
Protein sequenceShow/hide protein sequence
MLTRSKLGTFQPKAWLSSTPQSSKLVEPTSYKKALTCPEWKDAMDSEYQALINNNTWSLVPFPAGHRSVGCKWVHRLKMHLNGSIDKHKARLVAKGFTQTYGLDYFDTFS
PVAKPTTVRLILSLAVNFNWPIKQLDVNNVFLNEELNEEVFMTQPPGYIDKVNPSMSIPSRANDYSLACSQAHITLLKGVYFSWVAFSSVLNIPHLLY