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Sed0017200 (gene) of Chayote v1 genome

Gene IDSed0017200
OrganismSechium edule (Chayote v1)
DescriptionCytochrome b559 subunit alpha
Genome locationLG13:18460567..18461749
RNA-Seq ExpressionSed0017200
SyntenySed0017200
Gene Ontology termsGO:0009767 - photosynthetic electron transport chain (biological process)
GO:0009539 - photosystem II reaction center (cellular component)
GO:0016021 - integral component of membrane (cellular component)
GO:0020037 - heme binding (molecular function)
GO:0046872 - metal ion binding (molecular function)
InterPro domainsIPR006216 - Photosystem II cytochrome b559, conserved site
IPR006217 - Photosystem II cytochrome b559, alpha subunit
IPR013081 - Photosystem II cytochrome b559, N-terminal
IPR013082 - Photosystem II cytochrome b559, alpha subunit, lumenal region
IPR037025 - Photosystem II cytochrome b559, alpha subunit superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
CDP54793.1 Cytochrome b559 alpha chain (PsbE) [Staphylococcus aureus]2.7e-6986.79Show/hide
Query:  RKEETNYLVLHFDTDCEIALLRQKKDSYTDSVYSKNTLGTILTILQRYNFSKFTFTDLIFYGIDPLLTVQEYVELSMSGSTGERSFADIITSIRYWVIHS
        ++EE NYL LH D   EIALL QKKDSYTDSVYSKNT GTILTI QR++F +F FTD IFYGIDPL   QEYVEL MSGSTGERSFADIITSIRYWVIHS
Subjt:  RKEETNYLVLHFDTDCEIALLRQKKDSYTDSVYSKNTLGTILTILQRYNFSKFTFTDLIFYGIDPLLTVQEYVELSMSGSTGERSFADIITSIRYWVIHS

Query:  ITIPSLFIAGWLFVSTGLAYDVFGSPRPNEYFTESRQGIPLITGRFDSLEQLDEFSRSF
        ITIPSLFIAGWLFVSTGLAYDVFGSPRPNEYFTESRQGIPLITGRFDSLEQLDEFSRSF
Subjt:  ITIPSLFIAGWLFVSTGLAYDVFGSPRPNEYFTESRQGIPLITGRFDSLEQLDEFSRSF

ERN02869.1 hypothetical protein AMTR_s00334p00011530 [Amborella trichopoda]7.2e-7084.91Show/hide
Query:  RKEETNYLVLHFDTDCEIALLRQKKDSYTDSVYSKNTLGTILTILQRYNFSKFTFTDLIFYGIDPLLTVQEYVELSMSGSTGERSFADIITSIRYWVIHS
        ++E+ N L L FD D EI+LL QKKDSYTDSVYSK TLGT+LTI QR +FS+F FTD IFYG+DP LTVQEY EL MSGSTGERSFADIITSIRYWVIHS
Subjt:  RKEETNYLVLHFDTDCEIALLRQKKDSYTDSVYSKNTLGTILTILQRYNFSKFTFTDLIFYGIDPLLTVQEYVELSMSGSTGERSFADIITSIRYWVIHS

Query:  ITIPSLFIAGWLFVSTGLAYDVFGSPRPNEYFTESRQGIPLITGRFDSLEQLDEFSRSF
        ITIPSLFIAGWLFVSTGLAYDVFGSPRPNEYFTESRQG+PLITGRFDSLEQLDEFSRSF
Subjt:  ITIPSLFIAGWLFVSTGLAYDVFGSPRPNEYFTESRQGIPLITGRFDSLEQLDEFSRSF

KAB2044894.1 hypothetical protein ES319_D01G122200v1 [Gossypium barbadense]1.2e-6987.97Show/hide
Query:  KEETNYLVLHFDTDCEIALLRQKKDSYTDSVYSKNTLGTILTILQRYNFSKFTFTDLIFYGIDPLLTVQEYVELSMSGSTGERSFADIITSIRYWVIHSI
        KEE NYL LH D   EIALL QKKDSYTDSVYSKNT GTILTI QR++F +F FTD IFYGIDPL   QEYVEL MSGSTGERSFADIITSIRYWVIHSI
Subjt:  KEETNYLVLHFDTDCEIALLRQKKDSYTDSVYSKNTLGTILTILQRYNFSKFTFTDLIFYGIDPLLTVQEYVELSMSGSTGERSFADIITSIRYWVIHSI

Query:  TIPSLFIAGWLFVSTGLAYDVFGSPRPNEYFTESRQGIPLITGRFDSLEQLDEFSRSF
        TIPSLFIAGWLFVSTGLAYDVFGSPRPNEYFTESRQGIPLITGRFDSLEQLDEFSRSF
Subjt:  TIPSLFIAGWLFVSTGLAYDVFGSPRPNEYFTESRQGIPLITGRFDSLEQLDEFSRSF

QWW90288.1 PSII cytochrome b559 8kD subunit [Firmiana danxiaensis]3.8e-7189.31Show/hide
Query:  RKEETNYLVLHFDTDCEIALLRQKKDSYTDSVYSKNTLGTILTILQRYNFSKFTFTDLIFYGIDPLLTVQEYVELSMSGSTGERSFADIITSIRYWVIHS
        ++EE NYL LH D   EIALL QKKDSYTDSVYSKNT GTILTI QR NFS+F FTDLIFYGIDPL   QEYVELSMSGSTGERSFADIITSIRYWVIHS
Subjt:  RKEETNYLVLHFDTDCEIALLRQKKDSYTDSVYSKNTLGTILTILQRYNFSKFTFTDLIFYGIDPLLTVQEYVELSMSGSTGERSFADIITSIRYWVIHS

Query:  ITIPSLFIAGWLFVSTGLAYDVFGSPRPNEYFTESRQGIPLITGRFDSLEQLDEFSRSF
        ITIPSLFIAGWLFVSTGLAYDVFGSPRPNEYFTESRQGIPLITGRFDSLEQLDEFSRSF
Subjt:  ITIPSLFIAGWLFVSTGLAYDVFGSPRPNEYFTESRQGIPLITGRFDSLEQLDEFSRSF

TYI97217.1 hypothetical protein E1A91_D01G127700v1 [Gossypium mustelinum]3.6e-6987.97Show/hide
Query:  KEETNYLVLHFDTDCEIALLRQKKDSYTDSVYSKNTLGTILTILQRYNFSKFTFTDLIFYGIDPLLTVQEYVELSMSGSTGERSFADIITSIRYWVIHSI
        KEE NYL LH D   EIALL QKKDSYTDSVYSKNT GTILTI QR +F +F FTD IFYGIDPL   QEYVEL MSGSTGERSFADIITSIRYWVIHSI
Subjt:  KEETNYLVLHFDTDCEIALLRQKKDSYTDSVYSKNTLGTILTILQRYNFSKFTFTDLIFYGIDPLLTVQEYVELSMSGSTGERSFADIITSIRYWVIHSI

Query:  TIPSLFIAGWLFVSTGLAYDVFGSPRPNEYFTESRQGIPLITGRFDSLEQLDEFSRSF
        TIPSLFIAGWLFVSTGLAYDVFGSPRPNEYFTESRQGIPLITGRFDSLEQLDEFSRSF
Subjt:  TIPSLFIAGWLFVSTGLAYDVFGSPRPNEYFTESRQGIPLITGRFDSLEQLDEFSRSF

TrEMBL top hitse value%identityAlignment
A0A5D2W6I9 Cytochrome b559 subunit alpha1.7e-6987.97Show/hide
Query:  KEETNYLVLHFDTDCEIALLRQKKDSYTDSVYSKNTLGTILTILQRYNFSKFTFTDLIFYGIDPLLTVQEYVELSMSGSTGERSFADIITSIRYWVIHSI
        KEE NYL LH D   EIALL QKKDSYTDSVYSKNT GTILTI QR +F +F FTD IFYGIDPL   QEYVEL MSGSTGERSFADIITSIRYWVIHSI
Subjt:  KEETNYLVLHFDTDCEIALLRQKKDSYTDSVYSKNTLGTILTILQRYNFSKFTFTDLIFYGIDPLLTVQEYVELSMSGSTGERSFADIITSIRYWVIHSI

Query:  TIPSLFIAGWLFVSTGLAYDVFGSPRPNEYFTESRQGIPLITGRFDSLEQLDEFSRSF
        TIPSLFIAGWLFVSTGLAYDVFGSPRPNEYFTESRQGIPLITGRFDSLEQLDEFSRSF
Subjt:  TIPSLFIAGWLFVSTGLAYDVFGSPRPNEYFTESRQGIPLITGRFDSLEQLDEFSRSF

A0A5D2WYI1 Cytochrome b559 subunit alpha5.9e-7087.97Show/hide
Query:  KEETNYLVLHFDTDCEIALLRQKKDSYTDSVYSKNTLGTILTILQRYNFSKFTFTDLIFYGIDPLLTVQEYVELSMSGSTGERSFADIITSIRYWVIHSI
        KEE NYL LH D   EIALL QKKDSYTDSVYSKNT GTILTI QR++F +F FTD IFYGIDPL   QEYVEL MSGSTGERSFADIITSIRYWVIHSI
Subjt:  KEETNYLVLHFDTDCEIALLRQKKDSYTDSVYSKNTLGTILTILQRYNFSKFTFTDLIFYGIDPLLTVQEYVELSMSGSTGERSFADIITSIRYWVIHSI

Query:  TIPSLFIAGWLFVSTGLAYDVFGSPRPNEYFTESRQGIPLITGRFDSLEQLDEFSRSF
        TIPSLFIAGWLFVSTGLAYDVFGSPRPNEYFTESRQGIPLITGRFDSLEQLDEFSRSF
Subjt:  TIPSLFIAGWLFVSTGLAYDVFGSPRPNEYFTESRQGIPLITGRFDSLEQLDEFSRSF

A0A5J5NCB9 Cytochrome b559 subunit alpha6.6e-6987.34Show/hide
Query:  KEETNYLVLHFDTDCEIALLRQKKDSYTDSVYSKNTLGTILTILQRYNFSKFTFTDLIFYGIDPLLTVQEYVELSMSGSTGERSFADIITSIRYWVIHSI
        KEE NYL LH D   EIALL QKKDSYTDSVYSKNT GTILTI QR +F +F FT+ IFYGIDPL   QEYVEL MSGSTGERSFADIITSIRYWVIHSI
Subjt:  KEETNYLVLHFDTDCEIALLRQKKDSYTDSVYSKNTLGTILTILQRYNFSKFTFTDLIFYGIDPLLTVQEYVELSMSGSTGERSFADIITSIRYWVIHSI

Query:  TIPSLFIAGWLFVSTGLAYDVFGSPRPNEYFTESRQGIPLITGRFDSLEQLDEFSRSF
        TIPSLFIAGWLFVSTGLAYDVFGSPRPNEYFTESRQGIPLITGRFDSLEQLDEFSRSF
Subjt:  TIPSLFIAGWLFVSTGLAYDVFGSPRPNEYFTESRQGIPLITGRFDSLEQLDEFSRSF

A0A5J5SRF5 Cytochrome b559 subunit alpha5.9e-7087.97Show/hide
Query:  KEETNYLVLHFDTDCEIALLRQKKDSYTDSVYSKNTLGTILTILQRYNFSKFTFTDLIFYGIDPLLTVQEYVELSMSGSTGERSFADIITSIRYWVIHSI
        KEE NYL LH D   EIALL QKKDSYTDSVYSKNT GTILTI QR++F +F FTD IFYGIDPL   QEYVEL MSGSTGERSFADIITSIRYWVIHSI
Subjt:  KEETNYLVLHFDTDCEIALLRQKKDSYTDSVYSKNTLGTILTILQRYNFSKFTFTDLIFYGIDPLLTVQEYVELSMSGSTGERSFADIITSIRYWVIHSI

Query:  TIPSLFIAGWLFVSTGLAYDVFGSPRPNEYFTESRQGIPLITGRFDSLEQLDEFSRSF
        TIPSLFIAGWLFVSTGLAYDVFGSPRPNEYFTESRQGIPLITGRFDSLEQLDEFSRSF
Subjt:  TIPSLFIAGWLFVSTGLAYDVFGSPRPNEYFTESRQGIPLITGRFDSLEQLDEFSRSF

W1P5D5 Cytochrome b559 subunit alpha3.5e-7084.91Show/hide
Query:  RKEETNYLVLHFDTDCEIALLRQKKDSYTDSVYSKNTLGTILTILQRYNFSKFTFTDLIFYGIDPLLTVQEYVELSMSGSTGERSFADIITSIRYWVIHS
        ++E+ N L L FD D EI+LL QKKDSYTDSVYSK TLGT+LTI QR +FS+F FTD IFYG+DP LTVQEY EL MSGSTGERSFADIITSIRYWVIHS
Subjt:  RKEETNYLVLHFDTDCEIALLRQKKDSYTDSVYSKNTLGTILTILQRYNFSKFTFTDLIFYGIDPLLTVQEYVELSMSGSTGERSFADIITSIRYWVIHS

Query:  ITIPSLFIAGWLFVSTGLAYDVFGSPRPNEYFTESRQGIPLITGRFDSLEQLDEFSRSF
        ITIPSLFIAGWLFVSTGLAYDVFGSPRPNEYFTESRQG+PLITGRFDSLEQLDEFSRSF
Subjt:  ITIPSLFIAGWLFVSTGLAYDVFGSPRPNEYFTESRQGIPLITGRFDSLEQLDEFSRSF

SwissProt top hitse value%identityAlignment
P56779 Cytochrome b559 subunit alpha6.6e-42100Show/hide
Query:  MSGSTGERSFADIITSIRYWVIHSITIPSLFIAGWLFVSTGLAYDVFGSPRPNEYFTESRQGIPLITGRFDSLEQLDEFSRSF
        MSGSTGERSFADIITSIRYWVIHSITIPSLFIAGWLFVSTGLAYDVFGSPRPNEYFTESRQGIPLITGRFDSLEQLDEFSRSF
Subjt:  MSGSTGERSFADIITSIRYWVIHSITIPSLFIAGWLFVSTGLAYDVFGSPRPNEYFTESRQGIPLITGRFDSLEQLDEFSRSF

P59702 Cytochrome b559 subunit alpha6.6e-42100Show/hide
Query:  MSGSTGERSFADIITSIRYWVIHSITIPSLFIAGWLFVSTGLAYDVFGSPRPNEYFTESRQGIPLITGRFDSLEQLDEFSRSF
        MSGSTGERSFADIITSIRYWVIHSITIPSLFIAGWLFVSTGLAYDVFGSPRPNEYFTESRQGIPLITGRFDSLEQLDEFSRSF
Subjt:  MSGSTGERSFADIITSIRYWVIHSITIPSLFIAGWLFVSTGLAYDVFGSPRPNEYFTESRQGIPLITGRFDSLEQLDEFSRSF

P69382 Cytochrome b559 subunit alpha6.6e-42100Show/hide
Query:  MSGSTGERSFADIITSIRYWVIHSITIPSLFIAGWLFVSTGLAYDVFGSPRPNEYFTESRQGIPLITGRFDSLEQLDEFSRSF
        MSGSTGERSFADIITSIRYWVIHSITIPSLFIAGWLFVSTGLAYDVFGSPRPNEYFTESRQGIPLITGRFDSLEQLDEFSRSF
Subjt:  MSGSTGERSFADIITSIRYWVIHSITIPSLFIAGWLFVSTGLAYDVFGSPRPNEYFTESRQGIPLITGRFDSLEQLDEFSRSF

Q4VZH5 Cytochrome b559 subunit alpha6.6e-42100Show/hide
Query:  MSGSTGERSFADIITSIRYWVIHSITIPSLFIAGWLFVSTGLAYDVFGSPRPNEYFTESRQGIPLITGRFDSLEQLDEFSRSF
        MSGSTGERSFADIITSIRYWVIHSITIPSLFIAGWLFVSTGLAYDVFGSPRPNEYFTESRQGIPLITGRFDSLEQLDEFSRSF
Subjt:  MSGSTGERSFADIITSIRYWVIHSITIPSLFIAGWLFVSTGLAYDVFGSPRPNEYFTESRQGIPLITGRFDSLEQLDEFSRSF

Q70XY9 Cytochrome b559 subunit alpha6.6e-42100Show/hide
Query:  MSGSTGERSFADIITSIRYWVIHSITIPSLFIAGWLFVSTGLAYDVFGSPRPNEYFTESRQGIPLITGRFDSLEQLDEFSRSF
        MSGSTGERSFADIITSIRYWVIHSITIPSLFIAGWLFVSTGLAYDVFGSPRPNEYFTESRQGIPLITGRFDSLEQLDEFSRSF
Subjt:  MSGSTGERSFADIITSIRYWVIHSITIPSLFIAGWLFVSTGLAYDVFGSPRPNEYFTESRQGIPLITGRFDSLEQLDEFSRSF

Arabidopsis top hitse value%identityAlignment
ATCG00580.1 photosystem II reaction center protein E1.8e-4298.8Show/hide
Query:  MSGSTGERSFADIITSIRYWVIHSITIPSLFIAGWLFVSTGLAYDVFGSPRPNEYFTESRQGIPLITGRFDSLEQLDEFSRSF
        MSGSTGERSFADIITSIRYWVIHSITIPSLFIAGWLFVSTGLAYDVFGSPRPNEYFTESRQGIPLITGRFD LEQLDEFSRSF
Subjt:  MSGSTGERSFADIITSIRYWVIHSITIPSLFIAGWLFVSTGLAYDVFGSPRPNEYFTESRQGIPLITGRFDSLEQLDEFSRSF


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGATTCTACATCGACAAGCACCAAGAAAAGAAGAAACAAATTATTTAGTGCTTCATTTCGATACTGATTGTGAAATTGCGTTGCTGCGTCAGAAGAAGGATAGCTATAC
TGATTCGGTATACTCTAAAAACACCCTCGGTACAATATTGACGATCTTACAAAGATATAATTTCAGTAAATTTACATTTACTGATCTCATCTTTTACGGAATCGATCCCC
TTTTGACTGTACAAGAATATGTGGAGCTCAGCATGTCTGGAAGCACAGGAGAACGTTCTTTTGCTGATATTATCACCAGTATTCGATACTGGGTCATTCATAGCATTACT
ATACCTTCTCTATTCATTGCGGGTTGGTTATTCGTCAGCACGGGTTTAGCTTACGATGTTTTTGGAAGCCCTCGTCCAAATGAGTATTTTACAGAGAGCCGACAAGGAAT
TCCATTAATAACAGGACGTTTTGATTCTTTGGAACAACTCGATGAATTTAGTAGATCTTTTTAG
mRNA sequenceShow/hide mRNA sequence
CACATTTTACCCAATCTTCGGTTTCTAGCCCGAAGCCAATAACCGAGAGAACCCTTATACTACATACAGGAATTTTCTATTAAATGAATAGTACATGATTCTACATCGAC
AAGCACCAAGAAAAGAAGAAACAAATTATTTAGTGCTTCATTTCGATACTGATTGTGAAATTGCGTTGCTGCGTCAGAAGAAGGATAGCTATACTGATTCGGTATACTCT
AAAAACACCCTCGGTACAATATTGACGATCTTACAAAGATATAATTTCAGTAAATTTACATTTACTGATCTCATCTTTTACGGAATCGATCCCCTTTTGACTGTACAAGA
ATATGTGGAGCTCAGCATGTCTGGAAGCACAGGAGAACGTTCTTTTGCTGATATTATCACCAGTATTCGATACTGGGTCATTCATAGCATTACTATACCTTCTCTATTCA
TTGCGGGTTGGTTATTCGTCAGCACGGGTTTAGCTTACGATGTTTTTGGAAGCCCTCGTCCAAATGAGTATTTTACAGAGAGCCGACAAGGAATTCCATTAATAACAGGA
CGTTTTGATTCTTTGGAACAACTCGATGAATTTAGTAGATCTTTTTAGGAGGACCAAATGACTATCGATAAAACTTATCCTATTTTTACAGTGCGATGGTTGGCTGTTCA
CGGACTAGCTGTACCTACCGTTTCTTTTTTAGGGTCAATATCAGCAATGCAGTTCATCCAACGATAAACCTAATCCGAATTATAGAGCTATGACACAATCAAATCCGAAC
GAACAAAATGTTGAATTGAATCGTACCAGTCTTTACTGGGGGTTATTACTCATTTTTGTACTTGCTGTTTTATTTTCCAATTATTTCTTCAATTAATCAATTAAATAAAA
GAAAATACTAAATAATAGTACGAATTATCTTATCCCATTCGGAAGGATATCATCTCATAATTATCTATGACTGTTTCTGTCTCTAGCACGACCACTTGATGAAATGGGGA
GGGAAGTGGGACAAATGGCCGAGACTACTGGAAGGATTCCTCTTTGGATAATAGGTACTGTAACTGGTATTCCTGTGATCGGTTTAATCGGTATTTTCTTTTATGGTTCA
TATTCTGGATTAGGTTCATCTCTGTAATAATCGGATGAACTGAGTTGTAGACATGAAAGCGTAAGAACGCAACAGGATCCCCC
Protein sequenceShow/hide protein sequence
MILHRQAPRKEETNYLVLHFDTDCEIALLRQKKDSYTDSVYSKNTLGTILTILQRYNFSKFTFTDLIFYGIDPLLTVQEYVELSMSGSTGERSFADIITSIRYWVIHSIT
IPSLFIAGWLFVSTGLAYDVFGSPRPNEYFTESRQGIPLITGRFDSLEQLDEFSRSF