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Sed0017204 (gene) of Chayote v1 genome

Gene IDSed0017204
OrganismSechium edule (Chayote v1)
DescriptionArabinogalactan peptide
Genome locationLG11:33201062..33201672
RNA-Seq ExpressionSed0017204
SyntenySed0017204
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6591454.1 hypothetical protein SDJN03_13800, partial [Cucurbita argyrosperma subsp. sororia]8.5e-1480Show/hide
Query:  MAAVTNASFMALVAVLFAVLSIAAAQSAEAPAPPPASPATSVVPSLSFACVGSVVALVFGSSLKA
        MAAV+  SFMALVAVLF V+S+A AQSAE+PAP PASPATSVVPSLS ACVG+ VALVFGS+LKA
Subjt:  MAAVTNASFMALVAVLFAVLSIAAAQSAEAPAPPPASPATSVVPSLSFACVGSVVALVFGSSLKA

KAG6598305.1 hypothetical protein SDJN03_08083, partial [Cucurbita argyrosperma subsp. sororia]6.6e-0659.38Show/hide
Query:  MAAVTNASFMALVAVLFAVLSIAAAQSAEAPAPPPASPATSVVPSLSFACVGSVVALVFGSSLK
        MA V+ AS +AL+A++FAV S+AA    EAPAP PASPATS+ PS   ACV + VAL FGS+L+
Subjt:  MAAVTNASFMALVAVLFAVLSIAAAQSAEAPAPPPASPATSVVPSLSFACVGSVVALVFGSSLK

KAG7024335.1 hypothetical protein SDJN02_13149, partial [Cucurbita argyrosperma subsp. argyrosperma]8.5e-1480Show/hide
Query:  MAAVTNASFMALVAVLFAVLSIAAAQSAEAPAPPPASPATSVVPSLSFACVGSVVALVFGSSLKA
        MAAV+  SFMALVAVLF V+S+A AQSAE+PAP PASPATSVVPSLS ACVG+ VALVFGS+LKA
Subjt:  MAAVTNASFMALVAVLFAVLSIAAAQSAEAPAPPPASPATSVVPSLSFACVGSVVALVFGSSLKA

KGN55315.1 hypothetical protein Csa_012200 [Cucumis sativus]4.5e-1581.54Show/hide
Query:  MAAVTNASFMALVAVLFAVLSIAAAQSAEAPAPPPASPATSVVPSLSFACVGSVVALVFGSSLKA
        MAAV+  SFMALVAVLFAVLS+A AQSAE+PAPPPASPA SVVPSLSFACVG+ +AL+FGS+LKA
Subjt:  MAAVTNASFMALVAVLFAVLSIAAAQSAEAPAPPPASPATSVVPSLSFACVGSVVALVFGSSLKA

XP_040998978.1 probable protein phosphatase 2C 72 [Juglans microcarpa x Juglans regia]3.8e-0663.64Show/hide
Query:  AVTNASFMALVAVLFAVLSI---AAAQSAEAPAPPPASPATSVVPSLSFACVGSVVALVFGSSLKA
        AV+ AS MAL+AV FAVLS+   A AQ+ EAPAP P SPA S  PSL+FA +GSVVAL FGS  +A
Subjt:  AVTNASFMALVAVLFAVLSI---AAAQSAEAPAPPPASPATSVVPSLSFACVGSVVALVFGSSLKA

TrEMBL top hitse value%identityAlignment
A0A0A0LKU1 Uncharacterized protein1.7e-0453.12Show/hide
Query:  MAAVTNASFMALVAVLFAVLSIAAAQSAEAPAPPPASPATSVVPSLSFACVGSVVALVFGSSLK
        MAA++  S +AL+A++FA+ S+AA    EAPAP PASPATS+ PS   AC+ + +AL FGS+L+
Subjt:  MAAVTNASFMALVAVLFAVLSIAAAQSAEAPAPPPASPATSVVPSLSFACVGSVVALVFGSSLK

A0A2P5DTQ4 Arabinogalactan peptide2.3e-0453.12Show/hide
Query:  AAVTNASFMALVAVLFAVLS-IAAAQSAEAPAPPPASPATSVVPSLSFACVGSVVALVFGSSLK
        A+ +NAS + L+AV+  VLS + AA +AEAPAP PASPA+++ PS   AC+ ++VALVFGS+++
Subjt:  AAVTNASFMALVAVLFAVLS-IAAAQSAEAPAPPPASPATSVVPSLSFACVGSVVALVFGSSLK

A0A2P5EL16 Arabinogalactan peptide2.3e-0454.1Show/hide
Query:  TNASFMALVAVLFAVLS-IAAAQSAEAPAPPPASPATSVVPSLSFACVGSVVALVFGSSLK
        +NAS + L+AV+  VLS + AA +AEAPAP PASPA+++ PS   AC+ ++VALVFGS+++
Subjt:  TNASFMALVAVLFAVLS-IAAAQSAEAPAPPPASPATSVVPSLSFACVGSVVALVFGSSLK

Q96504 CRG162.2e-1581.54Show/hide
Query:  MAAVTNASFMALVAVLFAVLSIAAAQSAEAPAPPPASPATSVVPSLSFACVGSVVALVFGSSLKA
        MAAV+  SFMALVAVLFAVLS+A AQSAE+PAPPPASPA SVVPSLSFACVG+ +AL+FGS+LKA
Subjt:  MAAVTNASFMALVAVLFAVLSIAAAQSAEAPAPPPASPATSVVPSLSFACVGSVVALVFGSSLKA

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCCGCCGTCACCAACGCTTCCTTCATGGCTCTCGTGGCGGTTCTGTTCGCCGTACTCTCCATCGCCGCCGCGCAATCGGCTGAGGCTCCTGCTCCGCCGCCTGCTTC
TCCGGCTACCTCCGTCGTCCCGTCCTTGAGCTTCGCCTGCGTTGGTTCCGTTGTCGCTCTCGTCTTCGGATCTTCACTCAAGGCTGGAGGTTGA
mRNA sequenceShow/hide mRNA sequence
ACCAAAGTCTCATTTTCCATTACCTTTCTTCGCTCCTTTTTTTGAAACCCTAGAAATTTACAGAGCTATGGCCGCCGTCACCAACGCTTCCTTCATGGCTCTCGTGGCGG
TTCTGTTCGCCGTACTCTCCATCGCCGCCGCGCAATCGGCTGAGGCTCCTGCTCCGCCGCCTGCTTCTCCGGCTACCTCCGTCGTCCCGTCCTTGAGCTTCGCCTGCGTT
GGTTCCGTTGTCGCTCTCGTCTTCGGATCTTCACTCAAGGCTGGAGGTTGACATTGTTTTTTTTACGCGTCTTTTGATTCTAGCCATTCATGATTCTGTACTGACGCTCG
ATGATTGAGCGATTTGTTGAGTATATTATATTGAGTGTATATGATTTGATTTTAGGTTTTACTCGATAGTTCTGGTTTGTATTCATGTATTCACTGTGTGTTGTTTCGGT
CTTGTTCTTTCTATGATATCGACATTATTTTAGAATATAAGCTATTTCAATTTTCTCCTCTGTTTCTGTGATACTTAAGATCTTCCTTTCTTCTTCTCTGTTATTCTTTG
TCTAGCCAAATGGAGATTCGGTTGCCACTTTCTCAACAAATTTGCTTGGATTAGATCACTG
Protein sequenceShow/hide protein sequence
MAAVTNASFMALVAVLFAVLSIAAAQSAEAPAPPPASPATSVVPSLSFACVGSVVALVFGSSLKAGG