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Sed0017226 (gene) of Chayote v1 genome

Gene IDSed0017226
OrganismSechium edule (Chayote v1)
DescriptionRibosome biogenesis NEP1-like protein
Genome locationLG07:1318747..1320873
RNA-Seq ExpressionSed0017226
SyntenySed0017226
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
ADN33694.1 hypothetical protein [Cucumis melo subsp. melo]2.6e-4772.41Show/hide
Query:  RIEGHSGLASSTAAPAKG----------GGSGRSEYMKGEYAPIYIVMGFVGMALMIATHTAKQQLLHSPSVNFSKKKRETVTEAYDPDTAIDSADKFIN
        RI+G+   ASST AP+            GGSG SEYMKGEYAPIYIVMG V + + IATHTAKQQLLHSP VN SKKKRE++ E  DPDT I SADKFIN
Subjt:  RIEGHSGLASSTAAPAKG----------GGSGRSEYMKGEYAPIYIVMGFVGMALMIATHTAKQQLLHSPSVNFSKKKRETVTEAYDPDTAIDSADKFIN

Query:  KSFLRKLAHIQDDTKTLHDPVHPDPFTRARNAETLKTAGVDPSRR
        KSFLRK+AHIQDDTKTL DPVH DPFTR RNAETLKTAGVDP+RR
Subjt:  KSFLRKLAHIQDDTKTLHDPVHPDPFTRARNAETLKTAGVDPSRR

KAA0039866.1 putative Ribosome biogenesis protein NEP1-like [Cucumis melo var. makuwa]1.4e-4872.6Show/hide
Query:  RIEGHSGLASSTAAPAKG-----------GGSGRSEYMKGEYAPIYIVMGFVGMALMIATHTAKQQLLHSPSVNFSKKKRETVTEAYDPDTAIDSADKFI
        RI+G+   ASST AP+             GGSG SEYMKGEYAPIYIVMG V + + IATHTAKQQLLHSP VN SKKKRE++ E  DPDT I SADKFI
Subjt:  RIEGHSGLASSTAAPAKG-----------GGSGRSEYMKGEYAPIYIVMGFVGMALMIATHTAKQQLLHSPSVNFSKKKRETVTEAYDPDTAIDSADKFI

Query:  NKSFLRKLAHIQDDTKTLHDPVHPDPFTRARNAETLKTAGVDPSRR
        NKSFLRK+AHIQDDTKTL DPVHPDPFTR RNAETLKTAGVDP+RR
Subjt:  NKSFLRKLAHIQDDTKTLHDPVHPDPFTRARNAETLKTAGVDPSRR

XP_004140656.2 uncharacterized protein LOC101206372 [Cucumis sativus]7.4e-5067.27Show/hide
Query:  FRSPLTN-VWKSML---RIEGHSGLASSTAAP-------------AKGGGSGRSEYMKGEYAPIYIVMGFVGMALMIATHTAKQQLLHSPSVNFSKKKRE
        FR+ L N +WKSML   RI+G+   +SST  P             +  GGSG SEYMKGEYAPIYIVMG V + + IATHTAKQQLLHSP VN SKKKRE
Subjt:  FRSPLTN-VWKSML---RIEGHSGLASSTAAP-------------AKGGGSGRSEYMKGEYAPIYIVMGFVGMALMIATHTAKQQLLHSPSVNFSKKKRE

Query:  TVTEAYDPDTAIDSADKFINKSFLRKLAHIQDDTKTLHDPVHPDPFTRARNAETLKTAGVDPSRR
        ++ E  DPDT I SADKFINKSFLRK+AHIQ DTKTL DPVHPDPFTR RNAETLKTAG+DP+RR
Subjt:  TVTEAYDPDTAIDSADKFINKSFLRKLAHIQDDTKTLHDPVHPDPFTRARNAETLKTAGVDPSRR

XP_008459927.1 PREDICTED: uncharacterized protein LOC103498899 [Cucumis melo]2.0e-5070.37Show/hide
Query:  FRSPLTN-VWKSML---RIEGHSGLASSTAAPAKG----------GGSGRSEYMKGEYAPIYIVMGFVGMALMIATHTAKQQLLHSPSVNFSKKKRETVT
        FR+ L N +WKSML   RI+G+   ASST AP+            GGSG SEYMKGEYAPIYIVMG V + + IATHTAKQQLLHSP VN SKKKRE++ 
Subjt:  FRSPLTN-VWKSML---RIEGHSGLASSTAAPAKG----------GGSGRSEYMKGEYAPIYIVMGFVGMALMIATHTAKQQLLHSPSVNFSKKKRETVT

Query:  EAYDPDTAIDSADKFINKSFLRKLAHIQDDTKTLHDPVHPDPFTRARNAETLKTAGVDPSRR
        E  DPDT I SADKFINKSFLRK+AHIQDDTKTL DPVH DPFTR RNAETLKTAGVDP+RR
Subjt:  EAYDPDTAIDSADKFINKSFLRKLAHIQDDTKTLHDPVHPDPFTRARNAETLKTAGVDPSRR

XP_038906484.1 uncharacterized protein LOC120092464 [Benincasa hispida]1.7e-4967.26Show/hide
Query:  FRSPLTN-VWKSML---RIEGHSGLASSTAAPAKG----------------GGSGRSEYMKGEYAPIYIVMGFVGMALMIATHTAKQQLLHSPSVNFSKK
        F + LTN VWK+ML   RI+G   LASST APA                  GGS  SEYMKGEYAPIYIV+G V +A+ I THTAKQQLLHSP VNFSKK
Subjt:  FRSPLTN-VWKSML---RIEGHSGLASSTAAPAKG----------------GGSGRSEYMKGEYAPIYIVMGFVGMALMIATHTAKQQLLHSPSVNFSKK

Query:  KRETVTEAYDPDTAIDSADKFINKSFLRKLAHIQDDTKTLHDPVHPDPFTRARNAETLKTAGVDPSRR
        KRE++ E  DPDT I+SA+KFINKSFLRK+AHIQ+DTKTL DPVHP+PFTR RNAETLKTAGVDP+RR
Subjt:  KRETVTEAYDPDTAIDSADKFINKSFLRKLAHIQDDTKTLHDPVHPDPFTRARNAETLKTAGVDPSRR

TrEMBL top hitse value%identityAlignment
A0A0A0KC39 Uncharacterized protein3.6e-5067.27Show/hide
Query:  FRSPLTN-VWKSML---RIEGHSGLASSTAAP-------------AKGGGSGRSEYMKGEYAPIYIVMGFVGMALMIATHTAKQQLLHSPSVNFSKKKRE
        FR+ L N +WKSML   RI+G+   +SST  P             +  GGSG SEYMKGEYAPIYIVMG V + + IATHTAKQQLLHSP VN SKKKRE
Subjt:  FRSPLTN-VWKSML---RIEGHSGLASSTAAP-------------AKGGGSGRSEYMKGEYAPIYIVMGFVGMALMIATHTAKQQLLHSPSVNFSKKKRE

Query:  TVTEAYDPDTAIDSADKFINKSFLRKLAHIQDDTKTLHDPVHPDPFTRARNAETLKTAGVDPSRR
        ++ E  DPDT I SADKFINKSFLRK+AHIQ DTKTL DPVHPDPFTR RNAETLKTAG+DP+RR
Subjt:  TVTEAYDPDTAIDSADKFINKSFLRKLAHIQDDTKTLHDPVHPDPFTRARNAETLKTAGVDPSRR

A0A1S3CBE5 uncharacterized protein LOC1034988999.5e-5170.37Show/hide
Query:  FRSPLTN-VWKSML---RIEGHSGLASSTAAPAKG----------GGSGRSEYMKGEYAPIYIVMGFVGMALMIATHTAKQQLLHSPSVNFSKKKRETVT
        FR+ L N +WKSML   RI+G+   ASST AP+            GGSG SEYMKGEYAPIYIVMG V + + IATHTAKQQLLHSP VN SKKKRE++ 
Subjt:  FRSPLTN-VWKSML---RIEGHSGLASSTAAPAKG----------GGSGRSEYMKGEYAPIYIVMGFVGMALMIATHTAKQQLLHSPSVNFSKKKRETVT

Query:  EAYDPDTAIDSADKFINKSFLRKLAHIQDDTKTLHDPVHPDPFTRARNAETLKTAGVDPSRR
        E  DPDT I SADKFINKSFLRK+AHIQDDTKTL DPVH DPFTR RNAETLKTAGVDP+RR
Subjt:  EAYDPDTAIDSADKFINKSFLRKLAHIQDDTKTLHDPVHPDPFTRARNAETLKTAGVDPSRR

A0A5D3DLZ1 Putative Ribosome biogenesis protein NEP1-like6.8e-4972.6Show/hide
Query:  RIEGHSGLASSTAAPAKG-----------GGSGRSEYMKGEYAPIYIVMGFVGMALMIATHTAKQQLLHSPSVNFSKKKRETVTEAYDPDTAIDSADKFI
        RI+G+   ASST AP+             GGSG SEYMKGEYAPIYIVMG V + + IATHTAKQQLLHSP VN SKKKRE++ E  DPDT I SADKFI
Subjt:  RIEGHSGLASSTAAPAKG-----------GGSGRSEYMKGEYAPIYIVMGFVGMALMIATHTAKQQLLHSPSVNFSKKKRETVTEAYDPDTAIDSADKFI

Query:  NKSFLRKLAHIQDDTKTLHDPVHPDPFTRARNAETLKTAGVDPSRR
        NKSFLRK+AHIQDDTKTL DPVHPDPFTR RNAETLKTAGVDP+RR
Subjt:  NKSFLRKLAHIQDDTKTLHDPVHPDPFTRARNAETLKTAGVDPSRR

A0A6J1D5I0 uncharacterized protein LOC111017496 isoform X14.1e-4669.28Show/hide
Query:  MAFRSPLTNVWKSML-----RIEGHSGLASSTAAPAKGGGSGRSEYMKGEYAPIYIVMGFVGMALMIATHTAKQQLLHSPSVNFSKKKRETVTEAYDPDT
        MAFR   T +WKSML     RIEG    ASST   A    S +SEYMKGEYAPIYIVMG V +A+ I THTAKQQLLHSP V  SKKKRE++ E  DPDT
Subjt:  MAFRSPLTNVWKSML-----RIEGHSGLASSTAAPAKGGGSGRSEYMKGEYAPIYIVMGFVGMALMIATHTAKQQLLHSPSVNFSKKKRETVTEAYDPDT

Query:  AIDSADKFINKSFLRKLAHIQDDTKTLHDPVHPDPFTRARNAETLKTAGVDPS
         I SADKF+NKSFLRK+AHIQD  KTL DP HPDPFTR RNAETLKTAGVDP+
Subjt:  AIDSADKFINKSFLRKLAHIQDDTKTLHDPVHPDPFTRARNAETLKTAGVDPS

E5GB52 Uncharacterized protein1.3e-4772.41Show/hide
Query:  RIEGHSGLASSTAAPAKG----------GGSGRSEYMKGEYAPIYIVMGFVGMALMIATHTAKQQLLHSPSVNFSKKKRETVTEAYDPDTAIDSADKFIN
        RI+G+   ASST AP+            GGSG SEYMKGEYAPIYIVMG V + + IATHTAKQQLLHSP VN SKKKRE++ E  DPDT I SADKFIN
Subjt:  RIEGHSGLASSTAAPAKG----------GGSGRSEYMKGEYAPIYIVMGFVGMALMIATHTAKQQLLHSPSVNFSKKKRETVTEAYDPDTAIDSADKFIN

Query:  KSFLRKLAHIQDDTKTLHDPVHPDPFTRARNAETLKTAGVDPSRR
        KSFLRK+AHIQDDTKTL DPVH DPFTR RNAETLKTAGVDP+RR
Subjt:  KSFLRKLAHIQDDTKTLHDPVHPDPFTRARNAETLKTAGVDPSRR

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G63060.1 unknown protein5.5e-2753.33Show/hide
Query:  GEYAPIYIVMGFVGMALMIATHTAKQQLLHSPSVNFSKKKRETVTEAYDPDTAIDSADKFINKSFLRKLAHIQDDTKT-LHDPVHPDPFTRARNAETLKT
        GE+AP+ I+ GFVG+A+++A H+ KQQL+H+P+++  K +R  V E  DP+  + SADKFINKS+LRK+  IQD +K  L DP  P+PFT  RNAETL +
Subjt:  GEYAPIYIVMGFVGMALMIATHTAKQQLLHSPSVNFSKKKRETVTEAYDPDTAIDSADKFINKSFLRKLAHIQDDTKT-LHDPVHPDPFTRARNAETLKT

Query:  AGVDP
         GV P
Subjt:  AGVDP

AT5G07330.1 unknown protein2.5e-1939.06Show/hide
Query:  ASSTAAPAKGG--GSGRSEYMKGEYAPIYIVMGFVGMALMIATHTAKQQLLHSPSVNFSKKKRETVTEAYDPDTAIDSADKFINKSFLRKLAHIQ--DDT
        A STAA   GG   +  +   KG++ P+Y+ +G + +++    +TA   L  +P V  +KK RETV E  DPD  ++ AD+F N+S+ RK+AH+Q  D  
Subjt:  ASSTAAPAKGG--GSGRSEYMKGEYAPIYIVMGFVGMALMIATHTAKQQLLHSPSVNFSKKKRETVTEAYDPDTAIDSADKFINKSFLRKLAHIQ--DDT

Query:  KTLHDPVHPDPFTRARNAETLKTAGVDP
          + DP+  D F     A TLK  GVDP
Subjt:  KTLHDPVHPDPFTRARNAETLKTAGVDP


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCATTCAGATCCCCTCTCACAAATGTGTGGAAATCAATGCTCAGAATCGAAGGGCACAGCGGCCTAGCGTCGTCGACCGCCGCGCCCGCAAAGGGCGGGGGGAGCGG
GCGGAGCGAGTACATGAAGGGGGAGTACGCGCCCATCTACATAGTGATGGGGTTTGTGGGAATGGCTCTGATGATTGCAACCCACACGGCAAAGCAGCAGCTGTTGCATT
CGCCCTCGGTTAACTTCAGCAAGAAGAAGAGGGAGACCGTTACCGAGGCTTATGACCCCGATACCGCCATCGACTCCGCCGATAAGTTTATCAATAAATCATTTCTTAGG
AAGCTCGCTCACATCCAGGATGATACCAAGACCCTGCATGATCCTGTTCACCCTGACCCTTTTACCAGAGCTCGTAATGCTGAAACTCTGAAAACGGCTGGAGTGGATCC
TAGCCGTCGCTGA
mRNA sequenceShow/hide mRNA sequence
ATGGCATTCAGATCCCCTCTCACAAATGTGTGGAAATCAATGCTCAGAATCGAAGGGCACAGCGGCCTAGCGTCGTCGACCGCCGCGCCCGCAAAGGGCGGGGGGAGCGG
GCGGAGCGAGTACATGAAGGGGGAGTACGCGCCCATCTACATAGTGATGGGGTTTGTGGGAATGGCTCTGATGATTGCAACCCACACGGCAAAGCAGCAGCTGTTGCATT
CGCCCTCGGTTAACTTCAGCAAGAAGAAGAGGGAGACCGTTACCGAGGCTTATGACCCCGATACCGCCATCGACTCCGCCGATAAGTTTATCAATAAATCATTTCTTAGG
AAGCTCGCTCACATCCAGGATGATACCAAGACCCTGCATGATCCTGTTCACCCTGACCCTTTTACCAGAGCTCGTAATGCTGAAACTCTGAAAACGGCTGGAGTGGATCC
TAGCCGTCGCTGA
Protein sequenceShow/hide protein sequence
MAFRSPLTNVWKSMLRIEGHSGLASSTAAPAKGGGSGRSEYMKGEYAPIYIVMGFVGMALMIATHTAKQQLLHSPSVNFSKKKRETVTEAYDPDTAIDSADKFINKSFLR
KLAHIQDDTKTLHDPVHPDPFTRARNAETLKTAGVDPSRR