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Sed0017279 (gene) of Chayote v1 genome

Gene IDSed0017279
OrganismSechium edule (Chayote v1)
Description40S ribosomal protein S19
Genome locationLG11:34443967..34446027
RNA-Seq ExpressionSed0017279
SyntenySed0017279
Gene Ontology termsGO:0000028 - ribosomal small subunit assembly (biological process)
GO:0006412 - translation (biological process)
GO:0006952 - defense response (biological process)
GO:0022627 - cytosolic small ribosomal subunit (cellular component)
GO:0003723 - RNA binding (molecular function)
GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domainsIPR001266 - Ribosomal protein S19e
IPR018277 - Ribosomal protein S19e, conserved site
IPR036388 - Winged helix-like DNA-binding domain superfamily
IPR036390 - Winged helix DNA-binding domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6593129.1 Pentatricopeptide repeat-containing protein, mitochondrial, partial [Cucurbita argyrosperma subsp. sororia]2.1e-7397.18Show/hide
Query:  MATAKTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDPDWYFVRAASMARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAI
        MATA+TVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDPDWY+VRAASMARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAI
Subjt:  MATAKTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDPDWYFVRAASMARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAI

Query:  ARHILHQLQELNIVDVDPKGGRRITSSGRRDLDQVAGRIVVA
        ARHIL QLQE+NIVDVDPKGGRRITSSGRRDLDQVAGRIVVA
Subjt:  ARHILHQLQELNIVDVDPKGGRRITSSGRRDLDQVAGRIVVA

XP_022150295.1 40S ribosomal protein S19-3-like [Momordica charantia]9.3e-7497.18Show/hide
Query:  MATAKTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDPDWYFVRAASMARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAI
        MATAKTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDPDWY+VRAASMARKIYLRGGLGVGAFKRIYGGS+RNGSRPPHFC+SSGAI
Subjt:  MATAKTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDPDWYFVRAASMARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAI

Query:  ARHILHQLQELNIVDVDPKGGRRITSSGRRDLDQVAGRIVVA
        ARHILHQLQE+NIVDVDPKGGRRITSSGRRDLDQVAGRIVVA
Subjt:  ARHILHQLQELNIVDVDPKGGRRITSSGRRDLDQVAGRIVVA

XP_022923365.1 40S ribosomal protein S19-3-like [Cucurbita moschata]9.3e-7497.89Show/hide
Query:  MATAKTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDPDWYFVRAASMARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAI
        MATAKTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDPDWY+VRAASMARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAI
Subjt:  MATAKTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDPDWYFVRAASMARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAI

Query:  ARHILHQLQELNIVDVDPKGGRRITSSGRRDLDQVAGRIVVA
        ARHIL QLQE+NIVDVDPKGGRRITSSGRRDLDQVAGRIVVA
Subjt:  ARHILHQLQELNIVDVDPKGGRRITSSGRRDLDQVAGRIVVA

XP_022938991.1 40S ribosomal protein S19-3 [Cucurbita moschata]2.1e-7397.18Show/hide
Query:  MATAKTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDPDWYFVRAASMARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAI
        MATAKTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDPDWY+VRAASMARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAI
Subjt:  MATAKTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDPDWYFVRAASMARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAI

Query:  ARHILHQLQELNIVDVDPKGGRRITSSGRRDLDQVAGRIVVA
        ARHIL QLQE+NIVDVDPKGGR+ITSSGRRDLDQVAGRIVVA
Subjt:  ARHILHQLQELNIVDVDPKGGRRITSSGRRDLDQVAGRIVVA

XP_022954406.1 40S ribosomal protein S19-3-like [Cucurbita moschata]2.1e-7397.18Show/hide
Query:  MATAKTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDPDWYFVRAASMARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAI
        MATA+TVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDPDWY+VRAASMARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAI
Subjt:  MATAKTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDPDWYFVRAASMARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAI

Query:  ARHILHQLQELNIVDVDPKGGRRITSSGRRDLDQVAGRIVVA
        ARHIL QLQE+NIVDVDPKGGRRITSSGRRDLDQVAGRIVVA
Subjt:  ARHILHQLQELNIVDVDPKGGRRITSSGRRDLDQVAGRIVVA

TrEMBL top hitse value%identityAlignment
A0A6J1D839 40S ribosomal protein S19-3-like4.5e-7497.18Show/hide
Query:  MATAKTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDPDWYFVRAASMARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAI
        MATAKTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDPDWY+VRAASMARKIYLRGGLGVGAFKRIYGGS+RNGSRPPHFC+SSGAI
Subjt:  MATAKTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDPDWYFVRAASMARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAI

Query:  ARHILHQLQELNIVDVDPKGGRRITSSGRRDLDQVAGRIVVA
        ARHILHQLQE+NIVDVDPKGGRRITSSGRRDLDQVAGRIVVA
Subjt:  ARHILHQLQELNIVDVDPKGGRRITSSGRRDLDQVAGRIVVA

A0A6J1EBL3 40S ribosomal protein S19-3-like4.5e-7497.89Show/hide
Query:  MATAKTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDPDWYFVRAASMARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAI
        MATAKTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDPDWY+VRAASMARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAI
Subjt:  MATAKTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDPDWYFVRAASMARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAI

Query:  ARHILHQLQELNIVDVDPKGGRRITSSGRRDLDQVAGRIVVA
        ARHIL QLQE+NIVDVDPKGGRRITSSGRRDLDQVAGRIVVA
Subjt:  ARHILHQLQELNIVDVDPKGGRRITSSGRRDLDQVAGRIVVA

A0A6J1H7M6 40S ribosomal protein S19-3-like1.0e-7397.18Show/hide
Query:  MATAKTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDPDWYFVRAASMARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAI
        MATA+TVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDPDWY+VRAASMARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAI
Subjt:  MATAKTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDPDWYFVRAASMARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAI

Query:  ARHILHQLQELNIVDVDPKGGRRITSSGRRDLDQVAGRIVVA
        ARHIL QLQE+NIVDVDPKGGRRITSSGRRDLDQVAGRIVVA
Subjt:  ARHILHQLQELNIVDVDPKGGRRITSSGRRDLDQVAGRIVVA

A0A6J1JTL0 40S ribosomal protein S19-3-like4.5e-7497.89Show/hide
Query:  MATAKTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDPDWYFVRAASMARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAI
        MATAKTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDPDWY+VRAASMARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAI
Subjt:  MATAKTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDPDWYFVRAASMARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAI

Query:  ARHILHQLQELNIVDVDPKGGRRITSSGRRDLDQVAGRIVVA
        ARHIL QLQE+NIVDVDPKGGRRITSSGRRDLDQVAGRIVVA
Subjt:  ARHILHQLQELNIVDVDPKGGRRITSSGRRDLDQVAGRIVVA

A0A6J1JTW8 40S ribosomal protein S19-3-like1.0e-7397.18Show/hide
Query:  MATAKTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDPDWYFVRAASMARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAI
        MATA+TVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDPDWY+VRAASMARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAI
Subjt:  MATAKTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDPDWYFVRAASMARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAI

Query:  ARHILHQLQELNIVDVDPKGGRRITSSGRRDLDQVAGRIVVA
        ARHIL QLQE+NIVDVDPKGGRRITSSGRRDLDQVAGRIVVA
Subjt:  ARHILHQLQELNIVDVDPKGGRRITSSGRRDLDQVAGRIVVA

SwissProt top hitse value%identityAlignment
P40978 40S ribosomal protein S197.6e-6377.62Show/hide
Query:  ATAKTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDPDWYFVRAASMARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAIA
        +TA+TVKDV+PHEFVKAY+AHLKRSGK+ELP W DIVKTARFKEL PYDPDWY+ RAAS+ARKIYLR G+GVG F++IYGG +RNGSRPPHFC+SSGAI+
Subjt:  ATAKTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDPDWYFVRAASMARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAIA

Query:  RHILHQLQELNIVDVDPKGGRRITSSGRRDLDQVAGRIVVALA
        R+IL QLQ++ I+DVDPKGGR ITS GRRDLDQVAGR+ V +A
Subjt:  RHILHQLQELNIVDVDPKGGRRITSSGRRDLDQVAGRIVVALA

Q94613 40S ribosomal protein S198.5e-4658.21Show/hide
Query:  TVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDPDWYFVRAASMARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAIARHIL
        +VKDVS HEF +A+AA LK+SGK+++P WTD VKT  FKEL+PY+PDWYF+RAAS+ R +Y+R   G+G+F++IYGG +R G+ P HFC+++G+I+R +L
Subjt:  TVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDPDWYFVRAASMARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAIARHIL

Query:  HQLQELNIVDVDPKGGRRITSSGRRDLDQVAGRI
          L+ L IV+ DP GGRR+TS GRRDLD++A +I
Subjt:  HQLQELNIVDVDPKGGRRITSSGRRDLDQVAGRI

Q9FNP8 40S ribosomal protein S19-33.5e-6883.92Show/hide
Query:  MATAKTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDPDWYFVRAASMARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAI
        MAT KTVKDVSPHEFVKAYAAHLKRSGK+ELP WTDIVKT + KELAPYDPDWY++RAASMARK+YLRGGLGVGAF+RIYGGSKRNGSRPPHFC+SSG +
Subjt:  MATAKTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDPDWYFVRAASMARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAI

Query:  ARHILHQLQELNIVDVDPKGGRRITSSGRRDLDQVAGRIVVAL
        ARHIL QLQ +NIVD+D KGGR+ITSSG+RDLDQVAGRI  A+
Subjt:  ARHILHQLQELNIVDVDPKGGRRITSSGRRDLDQVAGRIVVAL

Q9LF30 40S ribosomal protein S19-21.9e-6684.89Show/hide
Query:  MATAKTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDPDWYFVRAASMARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAI
        MAT KTVKDVSPH+FVKAYA+HLKRSGK+ELP WTDIVKT R KELAPYDPDWY++RAASMARKIYLRGGLGVGAF+RIYGGSKRNGSRPPHFC+SSG I
Subjt:  MATAKTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDPDWYFVRAASMARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAI

Query:  ARHILHQLQELNIVDVDPKGGRRITSSGRRDLDQVAGRI
        ARHIL QL+ ++IV++D KGGRRITSSG+RDLDQVAGRI
Subjt:  ARHILHQLQELNIVDVDPKGGRRITSSGRRDLDQVAGRI

Q9SGA6 40S ribosomal protein S19-13.0e-6783.69Show/hide
Query:  MATAKTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDPDWYFVRAASMARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAI
        MAT KTVKDVSPH+FVKAYA+HLKRSGK+ELP WTDIVKT + KELAPYDPDWY++RAASMARK+YLRGGLGVGAF+RIYGGSKRNGSRPPHFC+SSG I
Subjt:  MATAKTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDPDWYFVRAASMARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAI

Query:  ARHILHQLQELNIVDVDPKGGRRITSSGRRDLDQVAGRIVV
        ARHIL QL+ +NIV++D KGGRRITSSG+RDLDQVAGRI V
Subjt:  ARHILHQLQELNIVDVDPKGGRRITSSGRRDLDQVAGRIVV

Arabidopsis top hitse value%identityAlignment
AT3G02080.1 Ribosomal protein S19e family protein2.1e-6883.69Show/hide
Query:  MATAKTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDPDWYFVRAASMARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAI
        MAT KTVKDVSPH+FVKAYA+HLKRSGK+ELP WTDIVKT + KELAPYDPDWY++RAASMARK+YLRGGLGVGAF+RIYGGSKRNGSRPPHFC+SSG I
Subjt:  MATAKTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDPDWYFVRAASMARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAI

Query:  ARHILHQLQELNIVDVDPKGGRRITSSGRRDLDQVAGRIVV
        ARHIL QL+ +NIV++D KGGRRITSSG+RDLDQVAGRI V
Subjt:  ARHILHQLQELNIVDVDPKGGRRITSSGRRDLDQVAGRIVV

AT5G15520.1 Ribosomal protein S19e family protein1.4e-6784.89Show/hide
Query:  MATAKTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDPDWYFVRAASMARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAI
        MAT KTVKDVSPH+FVKAYA+HLKRSGK+ELP WTDIVKT R KELAPYDPDWY++RAASMARKIYLRGGLGVGAF+RIYGGSKRNGSRPPHFC+SSG I
Subjt:  MATAKTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDPDWYFVRAASMARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAI

Query:  ARHILHQLQELNIVDVDPKGGRRITSSGRRDLDQVAGRI
        ARHIL QL+ ++IV++D KGGRRITSSG+RDLDQVAGRI
Subjt:  ARHILHQLQELNIVDVDPKGGRRITSSGRRDLDQVAGRI

AT5G61170.1 Ribosomal protein S19e family protein2.5e-6983.92Show/hide
Query:  MATAKTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDPDWYFVRAASMARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAI
        MAT KTVKDVSPHEFVKAYAAHLKRSGK+ELP WTDIVKT + KELAPYDPDWY++RAASMARK+YLRGGLGVGAF+RIYGGSKRNGSRPPHFC+SSG +
Subjt:  MATAKTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDPDWYFVRAASMARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAI

Query:  ARHILHQLQELNIVDVDPKGGRRITSSGRRDLDQVAGRIVVAL
        ARHIL QLQ +NIVD+D KGGR+ITSSG+RDLDQVAGRI  A+
Subjt:  ARHILHQLQELNIVDVDPKGGRRITSSGRRDLDQVAGRIVVAL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCGACGGCGAAGACTGTGAAAGACGTTTCCCCTCACGAATTCGTCAAAGCCTATGCGGCACATCTGAAGAGATCCGGAAAGGTTGAACTTCCCCCATGGACGGATAT
AGTTAAAACTGCAAGATTTAAAGAGCTTGCACCTTATGATCCTGATTGGTATTTTGTCAGGGCTGCCTCCATGGCTAGGAAAATCTATTTGAGGGGAGGTCTTGGTGTTG
GGGCTTTTAAGAGAATTTATGGTGGAAGCAAGAGGAACGGAAGTCGCCCTCCACATTTCTGTGAAAGCAGTGGTGCTATTGCCCGTCACATTTTACATCAGTTGCAGGAA
TTGAACATTGTCGATGTTGATCCTAAGGGTGGCAGGAGAATCACATCAAGTGGTCGACGGGATCTCGACCAAGTTGCTGGCCGGATTGTTGTTGCCCTTGCTTGA
mRNA sequenceShow/hide mRNA sequence
ATAAAAAGCTTTGGAAGCCATAGCCCTAAGGTTCTTTGATAATCTGCATTTGCTCAACCATGGCGACGGCGAAGACTGTGAAAGACGTTTCCCCTCACGAATTCGTCAAA
GCCTATGCGGCACATCTGAAGAGATCCGGAAAGGTTGAACTTCCCCCATGGACGGATATAGTTAAAACTGCAAGATTTAAAGAGCTTGCACCTTATGATCCTGATTGGTA
TTTTGTCAGGGCTGCCTCCATGGCTAGGAAAATCTATTTGAGGGGAGGTCTTGGTGTTGGGGCTTTTAAGAGAATTTATGGTGGAAGCAAGAGGAACGGAAGTCGCCCTC
CACATTTCTGTGAAAGCAGTGGTGCTATTGCCCGTCACATTTTACATCAGTTGCAGGAATTGAACATTGTCGATGTTGATCCTAAGGGTGGCAGGAGAATCACATCAAGT
GGTCGACGGGATCTCGACCAAGTTGCTGGCCGGATTGTTGTTGCCCTTGCTTGATTGATGAATTAGAGATGTTTTTGCTTATGAGATACCACCATGAAAATTTTCGAGTT
GACTGTCTAATTCAGATGAAGATAAGCTTGTGTTTTCATGGGTTTTGGATGGTTTAAAGTTTATTGTCATTTCCTTTGTCATTATTTATGGGATTTTTAGGATGAAATCA
AATTATCAACAATAGCCTCGAGATTCTTAGCAACAGACTTTTTGTACTAATTTTTTAGATATCATATCATAGATGTTGCCCACTTAAATCTTCTCAATTTTAGGTAATTT
ATGTATCTTTTAATATCCACATTTTGAATTGTTAGTTTTCAATTGAGAGTTTGTTAATTGAAAATGTAACATCGTTTAGAGTGTTTGGGCCACCAAGAATAAGGGAAGGA
TGAGAAGGGG
Protein sequenceShow/hide protein sequence
MATAKTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDPDWYFVRAASMARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAIARHILHQLQE
LNIVDVDPKGGRRITSSGRRDLDQVAGRIVVALA