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Sed0017306 (gene) of Chayote v1 genome

Gene IDSed0017306
OrganismSechium edule (Chayote v1)
DescriptionComplex 1 LYR protein
Genome locationLG11:26822055..26825447
RNA-Seq ExpressionSed0017306
SyntenySed0017306
Gene Ontology termsGO:0032981 - mitochondrial respiratory chain complex I assembly (biological process)
GO:0005759 - mitochondrial matrix (cellular component)
InterPro domainsIPR008011 - Complex 1 LYR protein


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022144304.1 uncharacterized protein LOC111014019 [Momordica charantia]2.4e-6785.26Show/hide
Query:  MILRLVGKCLNLSNQKNCLACDNIVFHLRVLHNGPDTIDELLDRHVVKKEKSYDDEDDELITQRRLTSTRREALSLYRDILRATRFFMWPDSRGVLWQDI
        M +RLVGKCLNLS  K+ LAC+ I FH RVLHNGPDTIDELLDRHVVKKEKS++DEDDELITQR LTSTRREALSLYRDI+RATRFFMWPDSRGVLW+D+
Subjt:  MILRLVGKCLNLSNQKNCLACDNIVFHLRVLHNGPDTIDELLDRHVVKKEKSYDDEDDELITQRRLTSTRREALSLYRDILRATRFFMWPDSRGVLWQDI

Query:  LRENARKEFEDARYEPDPEIVTRLLIGGRDAVQSALDKLAEKQMLEIDQKQSGRDQ
        LRENARKEFE+ARYE DPE+VTRLLIGGRDAVQSALDKLAEKQM EID+KQ G DQ
Subjt:  LRENARKEFEDARYEPDPEIVTRLLIGGRDAVQSALDKLAEKQMLEIDQKQSGRDQ

XP_022961619.1 uncharacterized protein LOC111462339 [Cucurbita moschata]7.8e-6682.69Show/hide
Query:  MILRLVGKCLNLSNQKNCLACDNIVFHLRVLHNGPDTIDELLDRHVVKKEKSYDDEDDELITQRRLTSTRREALSLYRDILRATRFFMWPDSRGVLWQDI
        M +RLV KC+ LS  KN LAC+ + FH R+LHNGPDTIDELLDRHVVKKEKS+DD+++ELITQRRLTSTRREALSLYRDILRATRFFMWPDSRGVLW+D+
Subjt:  MILRLVGKCLNLSNQKNCLACDNIVFHLRVLHNGPDTIDELLDRHVVKKEKSYDDEDDELITQRRLTSTRREALSLYRDILRATRFFMWPDSRGVLWQDI

Query:  LRENARKEFEDARYEPDPEIVTRLLIGGRDAVQSALDKLAEKQMLEIDQKQSGRDQ
        LR+NARKEFEDAR+E DPEIVTRLLIGGRDAVQSALDKLAEKQ  EID+KQSGRD+
Subjt:  LRENARKEFEDARYEPDPEIVTRLLIGGRDAVQSALDKLAEKQMLEIDQKQSGRDQ

XP_023545212.1 uncharacterized protein LOC111804691 [Cucurbita pepo subsp. pepo]1.5e-6482.05Show/hide
Query:  MILRLVGKCLNLSNQKNCLACDNIVFHLRVLHNGPDTIDELLDRHVVKKEKSYDDEDDELITQRRLTSTRREALSLYRDILRATRFFMWPDSRGVLWQDI
        M +RLV KC+ LS  KN LAC+ I +  R LHNGPDTIDELLDRHVVKKEKS+DD+++ELITQRRLTSTRREALSLYRDILRATRFFMWPDSRGVLW+D+
Subjt:  MILRLVGKCLNLSNQKNCLACDNIVFHLRVLHNGPDTIDELLDRHVVKKEKSYDDEDDELITQRRLTSTRREALSLYRDILRATRFFMWPDSRGVLWQDI

Query:  LRENARKEFEDARYEPDPEIVTRLLIGGRDAVQSALDKLAEKQMLEIDQKQSGRDQ
        LR+NARKEFEDAR+E DPEIVTRLLIGGRDAVQSALDKLAEKQ  EID+KQSGRD+
Subjt:  LRENARKEFEDARYEPDPEIVTRLLIGGRDAVQSALDKLAEKQMLEIDQKQSGRDQ

XP_031736624.1 uncharacterized protein LOC101214249 [Cucumis sativus]2.5e-6482.91Show/hide
Query:  MILRLVGKCLNLSN-QKNCLACDNIVFHLRVLHNGPDTIDELLDRHVVKKEKSYDDEDDELITQRRLTSTRREALSLYRDILRATRFFMWPDSRGVLWQD
        M +RLVGK LNLS+  KN L C  I FH RVLHNGPDT++ELLDRHVVKKEK +DDEDD+LITQRRLT+TRREALSLYRDILRATRFFMWPDSRGVLW+D
Subjt:  MILRLVGKCLNLSN-QKNCLACDNIVFHLRVLHNGPDTIDELLDRHVVKKEKSYDDEDDELITQRRLTSTRREALSLYRDILRATRFFMWPDSRGVLWQD

Query:  ILRENARKEFEDARYEPDPEIVTRLLIGGRDAVQSALDKLAEKQMLEIDQKQSGRDQL
        +LRENARKEFEDAR E DPE+VTRLLIGGRDAVQSALDKLAEKQ  EID+KQ GRDQL
Subjt:  ILRENARKEFEDARYEPDPEIVTRLLIGGRDAVQSALDKLAEKQMLEIDQKQSGRDQL

XP_038884246.1 uncharacterized protein LOC120075144 [Benincasa hispida]2.2e-6886.45Show/hide
Query:  LRLVGKCLNLSNQKNCLACDNIVFHLRVLHNGPDTIDELLDRHVVKKEKSYDDEDDELITQRRLTSTRREALSLYRDILRATRFFMWPDSRGVLWQDILR
        +RLVGKCLNLS  KN L C+ I FH RVLHNGPDT+ ELLDRHVVKKEKS+DDE+DELITQRRLT+TRREALSLYRDILRATRFFMWPDSRGVLW+D+LR
Subjt:  LRLVGKCLNLSNQKNCLACDNIVFHLRVLHNGPDTIDELLDRHVVKKEKSYDDEDDELITQRRLTSTRREALSLYRDILRATRFFMWPDSRGVLWQDILR

Query:  ENARKEFEDARYEPDPEIVTRLLIGGRDAVQSALDKLAEKQMLEIDQKQSGRDQL
        +NARKEFEDARYE DPEIVTRLLIGGRDAVQSALDKLAEKQM EID+KQ+GRDQL
Subjt:  ENARKEFEDARYEPDPEIVTRLLIGGRDAVQSALDKLAEKQMLEIDQKQSGRDQL

TrEMBL top hitse value%identityAlignment
A0A0A0LMK5 Uncharacterized protein1.2e-6482.91Show/hide
Query:  MILRLVGKCLNLSN-QKNCLACDNIVFHLRVLHNGPDTIDELLDRHVVKKEKSYDDEDDELITQRRLTSTRREALSLYRDILRATRFFMWPDSRGVLWQD
        M +RLVGK LNLS+  KN L C  I FH RVLHNGPDT++ELLDRHVVKKEK +DDEDD+LITQRRLT+TRREALSLYRDILRATRFFMWPDSRGVLW+D
Subjt:  MILRLVGKCLNLSN-QKNCLACDNIVFHLRVLHNGPDTIDELLDRHVVKKEKSYDDEDDELITQRRLTSTRREALSLYRDILRATRFFMWPDSRGVLWQD

Query:  ILRENARKEFEDARYEPDPEIVTRLLIGGRDAVQSALDKLAEKQMLEIDQKQSGRDQL
        +LRENARKEFEDAR E DPE+VTRLLIGGRDAVQSALDKLAEKQ  EID+KQ GRDQL
Subjt:  ILRENARKEFEDARYEPDPEIVTRLLIGGRDAVQSALDKLAEKQMLEIDQKQSGRDQL

A0A1S4DWJ1 uncharacterized protein LOC1034885692.1e-6482.91Show/hide
Query:  MILRLVGKCLNLSN-QKNCLACDNIVFHLRVLHNGPDTIDELLDRHVVKKEKSYDDEDDELITQRRLTSTRREALSLYRDILRATRFFMWPDSRGVLWQD
        M +RLVGK LNLS+  KN L C  I FH RVLHNGPDT++ELLDRHVVKKEKS DD+ D+LITQRRLTSTRREALSLYRDILRATRFFMWPDS+GVLW+D
Subjt:  MILRLVGKCLNLSN-QKNCLACDNIVFHLRVLHNGPDTIDELLDRHVVKKEKSYDDEDDELITQRRLTSTRREALSLYRDILRATRFFMWPDSRGVLWQD

Query:  ILRENARKEFEDARYEPDPEIVTRLLIGGRDAVQSALDKLAEKQMLEIDQKQSGRDQL
        +LR+NARKEFEDAR+E DPEIVTRLLIGGRDAVQSALDKLAEKQ  EID+KQSGRDQL
Subjt:  ILRENARKEFEDARYEPDPEIVTRLLIGGRDAVQSALDKLAEKQMLEIDQKQSGRDQL

A0A5A7VCD6 Complex 1 LYR protein2.1e-6482.91Show/hide
Query:  MILRLVGKCLNLSN-QKNCLACDNIVFHLRVLHNGPDTIDELLDRHVVKKEKSYDDEDDELITQRRLTSTRREALSLYRDILRATRFFMWPDSRGVLWQD
        M +RLVGK LNLS+  KN L C  I FH RVLHNGPDT++ELLDRHVVKKEKS DD+ D+LITQRRLTSTRREALSLYRDILRATRFFMWPDS+GVLW+D
Subjt:  MILRLVGKCLNLSN-QKNCLACDNIVFHLRVLHNGPDTIDELLDRHVVKKEKSYDDEDDELITQRRLTSTRREALSLYRDILRATRFFMWPDSRGVLWQD

Query:  ILRENARKEFEDARYEPDPEIVTRLLIGGRDAVQSALDKLAEKQMLEIDQKQSGRDQL
        +LR+NARKEFEDAR+E DPEIVTRLLIGGRDAVQSALDKLAEKQ  EID+KQSGRDQL
Subjt:  ILRENARKEFEDARYEPDPEIVTRLLIGGRDAVQSALDKLAEKQMLEIDQKQSGRDQL

A0A6J1CRY1 uncharacterized protein LOC1110140191.2e-6785.26Show/hide
Query:  MILRLVGKCLNLSNQKNCLACDNIVFHLRVLHNGPDTIDELLDRHVVKKEKSYDDEDDELITQRRLTSTRREALSLYRDILRATRFFMWPDSRGVLWQDI
        M +RLVGKCLNLS  K+ LAC+ I FH RVLHNGPDTIDELLDRHVVKKEKS++DEDDELITQR LTSTRREALSLYRDI+RATRFFMWPDSRGVLW+D+
Subjt:  MILRLVGKCLNLSNQKNCLACDNIVFHLRVLHNGPDTIDELLDRHVVKKEKSYDDEDDELITQRRLTSTRREALSLYRDILRATRFFMWPDSRGVLWQDI

Query:  LRENARKEFEDARYEPDPEIVTRLLIGGRDAVQSALDKLAEKQMLEIDQKQSGRDQ
        LRENARKEFE+ARYE DPE+VTRLLIGGRDAVQSALDKLAEKQM EID+KQ G DQ
Subjt:  LRENARKEFEDARYEPDPEIVTRLLIGGRDAVQSALDKLAEKQMLEIDQKQSGRDQ

A0A6J1HEL0 uncharacterized protein LOC1114623393.8e-6682.69Show/hide
Query:  MILRLVGKCLNLSNQKNCLACDNIVFHLRVLHNGPDTIDELLDRHVVKKEKSYDDEDDELITQRRLTSTRREALSLYRDILRATRFFMWPDSRGVLWQDI
        M +RLV KC+ LS  KN LAC+ + FH R+LHNGPDTIDELLDRHVVKKEKS+DD+++ELITQRRLTSTRREALSLYRDILRATRFFMWPDSRGVLW+D+
Subjt:  MILRLVGKCLNLSNQKNCLACDNIVFHLRVLHNGPDTIDELLDRHVVKKEKSYDDEDDELITQRRLTSTRREALSLYRDILRATRFFMWPDSRGVLWQDI

Query:  LRENARKEFEDARYEPDPEIVTRLLIGGRDAVQSALDKLAEKQMLEIDQKQSGRDQ
        LR+NARKEFEDAR+E DPEIVTRLLIGGRDAVQSALDKLAEKQ  EID+KQSGRD+
Subjt:  LRENARKEFEDARYEPDPEIVTRLLIGGRDAVQSALDKLAEKQMLEIDQKQSGRDQ

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G76060.1 LYR family of Fe/S cluster biogenesis protein6.2e-4561.04Show/hide
Query:  MILRLVGKCLNLSNQKNCLACDNIVFHLRVLHNGPDTIDELLDRHVVKKEKSYDDEDD-ELITQRRLTSTRREALSLYRDILRATRFFMWPDSRGVLWQD
        M+   + K  NL+ + + +     V   R LH GPDT++ELL+RH+ KKEK   D D+ E + +RRLTSTRREALSLYRDILRATRFF W DSRG LW+D
Subjt:  MILRLVGKCLNLSNQKNCLACDNIVFHLRVLHNGPDTIDELLDRHVVKKEKSYDDEDD-ELITQRRLTSTRREALSLYRDILRATRFFMWPDSRGVLWQD

Query:  ILRENARKEFEDARYEPDPEIVTRLLIGGRDAVQSALDKLAEKQMLEIDQKQSG
        +LRENARKEFE AR+E DPE++TRLLIGG DAV SALDKLAEKQ   I++++ G
Subjt:  ILRENARKEFEDARYEPDPEIVTRLLIGGRDAVQSALDKLAEKQMLEIDQKQSG


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGATGATCCTGAGGCTGGTGGGAAAATGTTTAAACCTATCAAATCAAAAGAATTGTCTGGCTTGTGATAATATTGTGTTCCACCTTCGAGTTTTGCATAATGGTCCAGA
CACAATTGATGAACTTTTAGACAGACATGTGGTTAAGAAAGAAAAGTCCTATGATGATGAAGATGATGAATTGATAACTCAGAGACGCCTCACCAGCACTCGACGTGAAG
CTCTAAGTCTGTACCGAGATATTCTCCGTGCAACTCGATTTTTTATGTGGCCAGATTCTCGAGGTGTCTTATGGCAAGATATTCTCAGGGAGAATGCTCGGAAGGAGTTT
GAGGATGCCCGCTACGAGCCTGATCCAGAAATTGTGACACGACTTCTCATCGGTGGGCGTGATGCAGTGCAGTCGGCTCTTGACAAGCTTGCTGAGAAGCAGATGCTGGA
GATTGATCAGAAACAAAGTGGTCGAGATCAACTTTGA
mRNA sequenceShow/hide mRNA sequence
CTTTTTTTTCATCCGCTTGAGACGGGATTCCAGGTCTGTTCTCCGTTGTGGCGAACTTGCTCCTTCGTCAATCTCTCTGAATAATCAATCTTCCCTCTCTCAATCTCACT
ACCTTCGATCCTTCCAGGAAAGTGCATGGGTAGTGTCTTGAGGCATGGTGGTGGCTGTAAGAAAAGCTGTCCGATAGTGAAGATTAAGATGGCTGCCCTTTGGAAACCAG
ATTCCAAGTAAATCATTCGGCACTGCCCCATTGTGATCAAAGGGAATTATTTGAATCATCGAGTTGATTGACAGCGTATGCAGTCGAGCAGGGATGATGATCCTGAGGCT
GGTGGGAAAATGTTTAAACCTATCAAATCAAAAGAATTGTCTGGCTTGTGATAATATTGTGTTCCACCTTCGAGTTTTGCATAATGGTCCAGACACAATTGATGAACTTT
TAGACAGACATGTGGTTAAGAAAGAAAAGTCCTATGATGATGAAGATGATGAATTGATAACTCAGAGACGCCTCACCAGCACTCGACGTGAAGCTCTAAGTCTGTACCGA
GATATTCTCCGTGCAACTCGATTTTTTATGTGGCCAGATTCTCGAGGTGTCTTATGGCAAGATATTCTCAGGGAGAATGCTCGGAAGGAGTTTGAGGATGCCCGCTACGA
GCCTGATCCAGAAATTGTGACACGACTTCTCATCGGTGGGCGTGATGCAGTGCAGTCGGCTCTTGACAAGCTTGCTGAGAAGCAGATGCTGGAGATTGATCAGAAACAAA
GTGGTCGAGATCAACTTTGATCTGTCAAATGGTTATTCTGATCTAATCTGCTATTACCATAGAAGCTTAAGTTTAGTGGGCCCTTTGTTTTGTATTTGGGTCTAATCAAC
TGAGAGGTTATTTAACATACAAAAAACATTAGTTGCTAATAAAATGAAAGCAAAAGGAAAGACCAGAAATGGAATTCATTTGTTATGGTGGTTTGTTTGAACTCCTTAGT
TTTTATATGTGGAGGCAATCCTGAAGCAAGTGCTTAATAGTCAATCTTCGAAAATCGTCAGCGTCAAGAGCTGGAAAGATTTCTACACCCACAACTATACACTACAATCG
CCATCAACATTTGCCAGAATGCAATGTTCATTACTATACACTACAATGCTCACTTGCGTAAGCAATGTAAGCTATTATGTTCCACCCGTACACTTGTTTTATCCTGTTTA
CTCACTTTTAACTGTAGTTCAGTTTGGCTGCTTGGGCAATGAGTTTGCATGAGACATTGCATTTGGGTTAAAAAAATATTTTCGAACGTTTACTTTAACTTGGCACTGGT
GGTTTCTTAGAGAACATTTTAGGGGCAGAACTATG
Protein sequenceShow/hide protein sequence
MMILRLVGKCLNLSNQKNCLACDNIVFHLRVLHNGPDTIDELLDRHVVKKEKSYDDEDDELITQRRLTSTRREALSLYRDILRATRFFMWPDSRGVLWQDILRENARKEF
EDARYEPDPEIVTRLLIGGRDAVQSALDKLAEKQMLEIDQKQSGRDQL