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Sed0017347 (gene) of Chayote v1 genome

Gene IDSed0017347
OrganismSechium edule (Chayote v1)
DescriptionRING-type domain-containing protein
Genome locationLG12:9873567..9874496
RNA-Seq ExpressionSed0017347
SyntenySed0017347
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0043783.1 uncharacterized protein E6C27_scaffold236G001150 [Cucumis melo var. makuwa]4.7e-4375.97Show/hide
Query:  SKSVRLAEVAGGTTAECAAVCCCGPCIVIEFLVLAIYKVPAGLCRRAWRRKRRRQRMKMK---MKKKGRWSPGEYDETDIQILSAGRNLYSSERKAEMSD
        S SVR AEVAGGTTAECAAVCCC PC+VI FLVLAIYKVPAGLCRRA R K RRQR+K K     ++GR+S G YDETDIQILSAG++LYSSE + + ++
Subjt:  SKSVRLAEVAGGTTAECAAVCCCGPCIVIEFLVLAIYKVPAGLCRRAWRRKRRRQRMKMK---MKKKGRWSPGEYDETDIQILSAGRNLYSSERKAEMSD

Query:  ETERKVMELEKEMWGIFYNTGFWRSPSRR
        ETERKVMELEKEMW IFY+TGFWRSPSRR
Subjt:  ETERKVMELEKEMWGIFYNTGFWRSPSRR

XP_011652052.1 uncharacterized protein LOC105434984 [Cucumis sativus]2.0e-4175.19Show/hide
Query:  SKSVRLAEVAGGTTAECAAVCCCGPCIVIEFLVLAIYKVPAGLCRRAWRRKRRRQRMKMK---MKKKGRWSPGEYDETDIQILSAGRNLYSSERKAEMSD
        S SVR AEVAGGTTAECAAVCCC PC+VI FLVLAIYKVPAGLCRRA R K RRQR+K K     ++GR+S G YDETDIQILSAG+ +YSSE + + + 
Subjt:  SKSVRLAEVAGGTTAECAAVCCCGPCIVIEFLVLAIYKVPAGLCRRAWRRKRRRQRMKMK---MKKKGRWSPGEYDETDIQILSAGRNLYSSERKAEMSD

Query:  ETERKVMELEKEMWGIFYNTGFWRSPSRR
        ETERKVMELEKEMW IFY+TGFWRSPSRR
Subjt:  ETERKVMELEKEMWGIFYNTGFWRSPSRR

XP_016899649.1 PREDICTED: uncharacterized protein LOC103486710 [Cucumis melo]3.4e-4175.4Show/hide
Query:  SKSVRLAEVAGGTTAECAAVCCCGPCIVIEFLVLAIYKVPAGLCRRAWRRKRRRQRMKMKMKKKGRWSPGEYDETDIQILSAGRNLYSSERKAEMSDETE
        S SVR AEVAGGTTAECAAVCCC PC+VI FLVLAIYKVPAGLCRRA R K RRQR+K K         G YDETDIQILSAG++LYSSE + + ++ETE
Subjt:  SKSVRLAEVAGGTTAECAAVCCCGPCIVIEFLVLAIYKVPAGLCRRAWRRKRRRQRMKMKMKKKGRWSPGEYDETDIQILSAGRNLYSSERKAEMSDETE

Query:  RKVMELEKEMWGIFYNTGFWRSPSRR
        RKVMELEKEMW IFY+TGFWRSPSRR
Subjt:  RKVMELEKEMWGIFYNTGFWRSPSRR

XP_022955715.1 uncharacterized protein LOC111457605 [Cucurbita moschata]3.2e-3664.84Show/hide
Query:  SVRLAEVAGGTTAECAAVCCCGPCIVIEFLVLAIYKVPAGLCRRAWRRKRRRQRMKMKM-KKKGRWSPGEYDETDIQILSAGRNLYSSERKAEMSDETER
        S+R AEVAGGTTAECAAVCCC PC V+ FLVLAIYKVPAGLCRRA R +RR    K  +  ++GR S   YDE D+QIL+ G+ +++SE K + SDETER
Subjt:  SVRLAEVAGGTTAECAAVCCCGPCIVIEFLVLAIYKVPAGLCRRAWRRKRRRQRMKMKM-KKKGRWSPGEYDETDIQILSAGRNLYSSERKAEMSDETER

Query:  KVMELEKEMWGIFYNTGFWRSPSRRQDL
        KVMELE EMW  FY TGFWRSPS+R  +
Subjt:  KVMELEKEMWGIFYNTGFWRSPSRRQDL

XP_038905288.1 uncharacterized protein LOC120091362 [Benincasa hispida]8.8e-4271.11Show/hide
Query:  VSKSVRLAEVAGGTTAECAAVCCCGPCIVIEFLVLAIYKVPAGLCRRAWRRKRRRQRMKMK---MKKKGRWSPGEYDETDIQILSAGRNLYSSERKAEMS
        VS SVR AEVAGGTTAECAAVCCC PC+V+ FLVLAIYKVPAGLCRRA R K RRQR+K K     ++ R+S G YDETDIQILS G+ +YSSE K + S
Subjt:  VSKSVRLAEVAGGTTAECAAVCCCGPCIVIEFLVLAIYKVPAGLCRRAWRRKRRRQRMKMK---MKKKGRWSPGEYDETDIQILSAGRNLYSSERKAEMS

Query:  DETERKVMELEKEMWGIFYNTGFWRSPSRRQDLIS
        +ETER+VMELEKEMW IFY+TGFWRSPS+R  + S
Subjt:  DETERKVMELEKEMWGIFYNTGFWRSPSRRQDLIS

TrEMBL top hitse value%identityAlignment
A0A0A0LGV0 Uncharacterized protein9.5e-4275.19Show/hide
Query:  SKSVRLAEVAGGTTAECAAVCCCGPCIVIEFLVLAIYKVPAGLCRRAWRRKRRRQRMKMK---MKKKGRWSPGEYDETDIQILSAGRNLYSSERKAEMSD
        S SVR AEVAGGTTAECAAVCCC PC+VI FLVLAIYKVPAGLCRRA R K RRQR+K K     ++GR+S G YDETDIQILSAG+ +YSSE + + + 
Subjt:  SKSVRLAEVAGGTTAECAAVCCCGPCIVIEFLVLAIYKVPAGLCRRAWRRKRRRQRMKMK---MKKKGRWSPGEYDETDIQILSAGRNLYSSERKAEMSD

Query:  ETERKVMELEKEMWGIFYNTGFWRSPSRR
        ETERKVMELEKEMW IFY+TGFWRSPSRR
Subjt:  ETERKVMELEKEMWGIFYNTGFWRSPSRR

A0A1S4DUJ2 uncharacterized protein LOC1034867101.6e-4175.4Show/hide
Query:  SKSVRLAEVAGGTTAECAAVCCCGPCIVIEFLVLAIYKVPAGLCRRAWRRKRRRQRMKMKMKKKGRWSPGEYDETDIQILSAGRNLYSSERKAEMSDETE
        S SVR AEVAGGTTAECAAVCCC PC+VI FLVLAIYKVPAGLCRRA R K RRQR+K K         G YDETDIQILSAG++LYSSE + + ++ETE
Subjt:  SKSVRLAEVAGGTTAECAAVCCCGPCIVIEFLVLAIYKVPAGLCRRAWRRKRRRQRMKMKMKKKGRWSPGEYDETDIQILSAGRNLYSSERKAEMSDETE

Query:  RKVMELEKEMWGIFYNTGFWRSPSRR
        RKVMELEKEMW IFY+TGFWRSPSRR
Subjt:  RKVMELEKEMWGIFYNTGFWRSPSRR

A0A5D3DQ13 Uncharacterized protein2.3e-4375.97Show/hide
Query:  SKSVRLAEVAGGTTAECAAVCCCGPCIVIEFLVLAIYKVPAGLCRRAWRRKRRRQRMKMK---MKKKGRWSPGEYDETDIQILSAGRNLYSSERKAEMSD
        S SVR AEVAGGTTAECAAVCCC PC+VI FLVLAIYKVPAGLCRRA R K RRQR+K K     ++GR+S G YDETDIQILSAG++LYSSE + + ++
Subjt:  SKSVRLAEVAGGTTAECAAVCCCGPCIVIEFLVLAIYKVPAGLCRRAWRRKRRRQRMKMK---MKKKGRWSPGEYDETDIQILSAGRNLYSSERKAEMSD

Query:  ETERKVMELEKEMWGIFYNTGFWRSPSRR
        ETERKVMELEKEMW IFY+TGFWRSPSRR
Subjt:  ETERKVMELEKEMWGIFYNTGFWRSPSRR

A0A6J1GVU4 uncharacterized protein LOC1114576051.6e-3664.84Show/hide
Query:  SVRLAEVAGGTTAECAAVCCCGPCIVIEFLVLAIYKVPAGLCRRAWRRKRRRQRMKMKM-KKKGRWSPGEYDETDIQILSAGRNLYSSERKAEMSDETER
        S+R AEVAGGTTAECAAVCCC PC V+ FLVLAIYKVPAGLCRRA R +RR    K  +  ++GR S   YDE D+QIL+ G+ +++SE K + SDETER
Subjt:  SVRLAEVAGGTTAECAAVCCCGPCIVIEFLVLAIYKVPAGLCRRAWRRKRRRQRMKMKM-KKKGRWSPGEYDETDIQILSAGRNLYSSERKAEMSDETER

Query:  KVMELEKEMWGIFYNTGFWRSPSRRQDL
        KVMELE EMW  FY TGFWRSPS+R  +
Subjt:  KVMELEKEMWGIFYNTGFWRSPSRRQDL

A0A6J1J6H8 uncharacterized protein LOC1114817883.4e-3156.62Show/hide
Query:  VSKSVRLAEVAGGTTAECAAVCCCGPCIVIEFLVLAIYKVPAGLCRRAWRRKRRRQRMKMK---MKKKGRWSPGEYDETDIQILSAGRNLYSSERKAEMS
        VS +VR AEVAGGTTAECAAV CC PCI + FLVLAIYK+PAGLCRRA R K R+   K K     + GR+  G  D+ D+Q+++  + +Y        S
Subjt:  VSKSVRLAEVAGGTTAECAAVCCCGPCIVIEFLVLAIYKVPAGLCRRAWRRKRRRQRMKMK---MKKKGRWSPGEYDETDIQILSAGRNLYSSERKAEMS

Query:  DETERKVMELEKEMWGIFYNTGFWRSPSRRQDLISN
        +E ERKV+ELEKEMW +FYNTGFWRSPS+R  + S+
Subjt:  DETERKVMELEKEMWGIFYNTGFWRSPSRRQDLISN

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT2G27180.1 unknown protein3.6e-1741.13Show/hide
Query:  RLAEVAGGTTAECAAVCCCGPCIVIEFLVLAIYKVPAGLCRRAWRRKRRRQRMKMKMKKKGRWSPGEYDETDIQILSAGRNLYSS--ERKAEMSDETERK
        ++ EVAGG  AECAAV CC PC V+  +VLA+YKVPA +C++AWRR +RR R   K       +  E  E+ +       +L +     +  +S      
Subjt:  RLAEVAGGTTAECAAVCCCGPCIVIEFLVLAIYKVPAGLCRRAWRRKRRRQRMKMKMKKKGRWSPGEYDETDIQILSAGRNLYSS--ERKAEMSDETERK

Query:  VMELEKEMWGIFYNTGFWRSPSRR
        V+ LE EM   FY  GFWRSPS++
Subjt:  VMELEKEMWGIFYNTGFWRSPSRR

AT3G11690.1 unknown protein5.4e-2140.4Show/hide
Query:  AEVAGGTTAECAAVCCCGPCIVIEFLVLAIYKVPAGLCRRAWRRKRRRQRMKM----------KMKKKGR----------------WSPGEYDETDIQIL
        AE  GGTTA CAAV CC PC ++  LVLAIYKVP G+CRRA R +RR+Q +K           K ++  R                 S  E D+  + + 
Subjt:  AEVAGGTTAECAAVCCCGPCIVIEFLVLAIYKVPAGLCRRAWRRKRRRQRMKM----------KMKKKGR----------------WSPGEYDETDIQIL

Query:  SAGRNLYSSERKAEMSDETERKVMELEKEMWGIFYNTGFWRSPSRRQDLIS
          G+++ +     E +DE +  V+ LEKEMW  FY  GFWRSPS+R+ + S
Subjt:  SAGRNLYSSERKAEMSDETERKVMELEKEMWGIFYNTGFWRSPSRRQDLIS

AT5G06380.1 unknown protein1.7e-1944.26Show/hide
Query:  AEVAGGTTAECAAVCCCGPCIVIEFLVLAIYKVPAGLCRRAWRRKRRRQRMKMKMKKKGR-WSPGEYDETDIQILSAGRNLYSSERKAEMSDETERKVME
        AE  GGTTA CAA+C C PC V+  +VLA+YK+P GLCRRA RR RR++  K +  + GR +  G   +  +  L        S  + E  +E +  V+ 
Subjt:  AEVAGGTTAECAAVCCCGPCIVIEFLVLAIYKVPAGLCRRAWRRKRRRQRMKMKMKKKGR-WSPGEYDETDIQILSAGRNLYSSERKAEMSDETERKVME

Query:  LEKEMWGIFYNTGFWRSPSRRQ
        LEKEMW  FY+ GFWRS S+ +
Subjt:  LEKEMWGIFYNTGFWRSPSRRQ


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCAGCGGGTGAGCAAAAGCGTCCGGTTGGCGGAGGTAGCCGGCGGGACAACGGCGGAGTGCGCCGCCGTGTGCTGCTGCGGTCCTTGCATCGTGATCGAGTTCCTGGT
GCTGGCCATTTACAAGGTGCCGGCGGGGCTGTGCCGGCGGGCGTGGAGGAGGAAGCGGCGGCGGCAGAGGATGAAGATGAAGATGAAGAAGAAAGGGCGGTGGTCTCCCG
GGGAGTACGACGAGACGGATATTCAGATACTCTCCGCCGGAAGAAACCTGTACTCGTCGGAACGGAAAGCAGAAATGTCCGACGAGACGGAGAGGAAAGTGATGGAACTG
GAAAAGGAGATGTGGGGGATTTTTTACAATACTGGATTCTGGAGAAGCCCTTCCCGGAGACAAGATCTAATTTCAAATTAA
mRNA sequenceShow/hide mRNA sequence
TTGGAAAACATTTGCTGTCTCCAACCACACCATTTTCCCCCTCCTCCTCCCATTTTCTGTGTAAATCAAAATCCATAACAGAAATTCCCCCATTTATAAGACCCCATTTC
ATAGTCTCACCTTTCGCCGCCGTCCTCGATTTCTGTTCTCCGGCATCTGTTAGGGGTATTTTCTCTTCCGATTATGCAGCGGGTGAGCAAAAGCGTCCGGTTGGCGGAGG
TAGCCGGCGGGACAACGGCGGAGTGCGCCGCCGTGTGCTGCTGCGGTCCTTGCATCGTGATCGAGTTCCTGGTGCTGGCCATTTACAAGGTGCCGGCGGGGCTGTGCCGG
CGGGCGTGGAGGAGGAAGCGGCGGCGGCAGAGGATGAAGATGAAGATGAAGAAGAAAGGGCGGTGGTCTCCCGGGGAGTACGACGAGACGGATATTCAGATACTCTCCGC
CGGAAGAAACCTGTACTCGTCGGAACGGAAAGCAGAAATGTCCGACGAGACGGAGAGGAAAGTGATGGAACTGGAAAAGGAGATGTGGGGGATTTTTTACAATACTGGAT
TCTGGAGAAGCCCTTCCCGGAGACAAGATCTAATTTCAAATTAACCCTTTTCCTTTTCCAAATCTATGGATTCATTCTCTCCACATTTTCCCGGAAAAGCAAAATTTCCG
CCATTGTCTTCTTCGTTCTGTTCTGCTCTGTTCTGTTCTGTGTGTGTTTGAATTTGATTCGATCATCATTTGGAAACGGTGGCGTTTGTTTTTTGGGGGCCATATTTCAT
GGTGTTTGGCTTCCGGGATAATATTCTACTTTCTCCTTTCCTTTAATTATTACCTACGTTTACATAATTATAAAGATATTGCCATAAATTTCAAATAAAATAAAATAAAG
ATATTGCTATAACTTTATTCAATTTATAGGGAATTAATGTCATTCACAAC
Protein sequenceShow/hide protein sequence
MQRVSKSVRLAEVAGGTTAECAAVCCCGPCIVIEFLVLAIYKVPAGLCRRAWRRKRRRQRMKMKMKKKGRWSPGEYDETDIQILSAGRNLYSSERKAEMSDETERKVMEL
EKEMWGIFYNTGFWRSPSRRQDLISN