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Sed0017387 (gene) of Chayote v1 genome

Gene IDSed0017387
OrganismSechium edule (Chayote v1)
DescriptionPMD domain-containing protein
Genome locationLG11:5483102..5485829
RNA-Seq ExpressionSed0017387
SyntenySed0017387
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0047478.1 hypothetical protein E6C27_scaffold498G00950 [Cucumis melo var. makuwa]2.1e-4352.6Show/hide
Query:  MVHFAERITSGLKYLVILKDKEQLIKDGLSLLAEEPLASTLSPTWQHL-NVKFLSELSRELPFEGNDKAWVLKSSMHGRNYNEDPELTLGRRLIEGETHW
        MV+F ER  SG+++LVIL D+ Q  +DGLSL+ E+P A   +  W  L N   L  LS E+P      AWVL+SS+H    N    LTLG+RLIEG+T W
Subjt:  MVHFAERITSGLKYLVILKDKEQLIKDGLSLLAEEPLASTLSPTWQHL-NVKFLSELSRELPFEGNDKAWVLKSSMHGRNYNEDPELTLGRRLIEGETHW

Query:  NTIMKIHGDWSFIDFYWEWLEFFVGRNEKVLNQNRLRNVVMASLYTYDHCNDVVRAFCEGWCPRTNTLFTAMG
         T+ K+ G++ F D YWEWLE  VGRN ++L   RL   V ASLYTYD  +DVVRAFCE WCP TNTL T  G
Subjt:  NTIMKIHGDWSFIDFYWEWLEFFVGRNEKVLNQNRLRNVVMASLYTYDHCNDVVRAFCEGWCPRTNTLFTAMG

KAA0060611.1 hypothetical protein E6C27_scaffold22G004890 [Cucumis melo var. makuwa]8.0e-4351.45Show/hide
Query:  MVHFAERITSGLKYLVILKDKEQLIKDGLSLLAEEPLASTLSPTWQHL-NVKFLSELSRELPFEGNDKAWVLKSSMHGRNYNEDPELTLGRRLIEGETHW
        MV+F ER  SG+++LVIL D+ QL +DGLSL+ E+P A   +  W  L N   L  L  E+P      AWVL+SS+H    N    LTLG+RLIEG+T W
Subjt:  MVHFAERITSGLKYLVILKDKEQLIKDGLSLLAEEPLASTLSPTWQHL-NVKFLSELSRELPFEGNDKAWVLKSSMHGRNYNEDPELTLGRRLIEGETHW

Query:  NTIMKIHGDWSFIDFYWEWLEFFVGRNEKVLNQNRLRNVVMASLYTYDHCNDVVRAFCEGWCPRTNTLFTAMG
         T++K+ G++ F D YWEWLE  VG+N ++L    L   V ASLYTYD   DVVRAFCE WCP TNTL T  G
Subjt:  NTIMKIHGDWSFIDFYWEWLEFFVGRNEKVLNQNRLRNVVMASLYTYDHCNDVVRAFCEGWCPRTNTLFTAMG

KAA0061098.1 putative mitochondrial protein [Cucumis melo var. makuwa]1.9e-4453.18Show/hide
Query:  MVHFAERITSGLKYLVILKDKEQLIKDGLSLLAEEPLASTLSPTWQHL-NVKFLSELSRELPFEGNDKAWVLKSSMHGRNYNEDPELTLGRRLIEGETHW
        MV+F ER  SG+++LVIL D+ Q  +DGLSL+ E+P A T +  W  L N   LS LS E+P      AWVL+S +H    N    LT G+RLIEG+THW
Subjt:  MVHFAERITSGLKYLVILKDKEQLIKDGLSLLAEEPLASTLSPTWQHL-NVKFLSELSRELPFEGNDKAWVLKSSMHGRNYNEDPELTLGRRLIEGETHW

Query:  NTIMKIHGDWSFIDFYWEWLEFFVGRNEKVLNQNRLRNVVMASLYTYDHCNDVVRAFCEGWCPRTNTLFTAMG
         T+ K+ G++ F D YWEWLE  VGRN ++L    L   V ASLYTYD  NDVVRAFCE WCP TNTL T  G
Subjt:  NTIMKIHGDWSFIDFYWEWLEFFVGRNEKVLNQNRLRNVVMASLYTYDHCNDVVRAFCEGWCPRTNTLFTAMG

TYK02261.1 hypothetical protein E5676_scaffold18G00620 [Cucumis melo var. makuwa]8.0e-4351.45Show/hide
Query:  MVHFAERITSGLKYLVILKDKEQLIKDGLSLLAEEPLASTLSPTWQHL-NVKFLSELSRELPFEGNDKAWVLKSSMHGRNYNEDPELTLGRRLIEGETHW
        MV+F ER  SG+++LVIL D+ QL +DGLSL+ E+P A   +  W  L N   L  L  E+P      AWVL+SS+H    N    LTLG+RLIEG+T W
Subjt:  MVHFAERITSGLKYLVILKDKEQLIKDGLSLLAEEPLASTLSPTWQHL-NVKFLSELSRELPFEGNDKAWVLKSSMHGRNYNEDPELTLGRRLIEGETHW

Query:  NTIMKIHGDWSFIDFYWEWLEFFVGRNEKVLNQNRLRNVVMASLYTYDHCNDVVRAFCEGWCPRTNTLFTAMG
         T++K+ G++ F D YWEWLE  VG+N ++L    L   V ASLYTYD   DVVRAFCE WCP TNTL T  G
Subjt:  NTIMKIHGDWSFIDFYWEWLEFFVGRNEKVLNQNRLRNVVMASLYTYDHCNDVVRAFCEGWCPRTNTLFTAMG

TYK19639.1 hypothetical protein E5676_scaffold242G00260 [Cucumis melo var. makuwa]3.0e-4252.02Show/hide
Query:  MVHFAERITSGLKYLVILKDKEQLIKDGLSLLAEEPLASTLSPTWQHL-NVKFLSELSRELPFEGNDKAWVLKSSMHGRNYNEDPELTLGRRLIEGETHW
        MV+F ER  SG+++LVIL D+ Q  +DGLSL+ E+  A   +  W  L N   L  LS E+P      AWVL+SS+H    N    LTLG+RLIEG+T W
Subjt:  MVHFAERITSGLKYLVILKDKEQLIKDGLSLLAEEPLASTLSPTWQHL-NVKFLSELSRELPFEGNDKAWVLKSSMHGRNYNEDPELTLGRRLIEGETHW

Query:  NTIMKIHGDWSFIDFYWEWLEFFVGRNEKVLNQNRLRNVVMASLYTYDHCNDVVRAFCEGWCPRTNTLFTAMG
         T+ K+ G++ F D YWEWLE  VGRN ++L    L +VV ASLYTYD  +DVVRAFCE WCP TNTL T  G
Subjt:  NTIMKIHGDWSFIDFYWEWLEFFVGRNEKVLNQNRLRNVVMASLYTYDHCNDVVRAFCEGWCPRTNTLFTAMG

TrEMBL top hitse value%identityAlignment
A0A5A7TX42 Uncharacterized protein1.0e-4352.6Show/hide
Query:  MVHFAERITSGLKYLVILKDKEQLIKDGLSLLAEEPLASTLSPTWQHL-NVKFLSELSRELPFEGNDKAWVLKSSMHGRNYNEDPELTLGRRLIEGETHW
        MV+F ER  SG+++LVIL D+ Q  +DGLSL+ E+P A   +  W  L N   L  LS E+P      AWVL+SS+H    N    LTLG+RLIEG+T W
Subjt:  MVHFAERITSGLKYLVILKDKEQLIKDGLSLLAEEPLASTLSPTWQHL-NVKFLSELSRELPFEGNDKAWVLKSSMHGRNYNEDPELTLGRRLIEGETHW

Query:  NTIMKIHGDWSFIDFYWEWLEFFVGRNEKVLNQNRLRNVVMASLYTYDHCNDVVRAFCEGWCPRTNTLFTAMG
         T+ K+ G++ F D YWEWLE  VGRN ++L   RL   V ASLYTYD  +DVVRAFCE WCP TNTL T  G
Subjt:  NTIMKIHGDWSFIDFYWEWLEFFVGRNEKVLNQNRLRNVVMASLYTYDHCNDVVRAFCEGWCPRTNTLFTAMG

A0A5A7UV18 Uncharacterized protein1.5e-4251.45Show/hide
Query:  MVHFAERITSGLKYLVILKDKEQLIKDGLSLLAEEPLASTLSPTWQHL-NVKFLSELSRELPFEGNDKAWVLKSSMHGRNYNEDPELTLGRRLIEGETHW
        MV+F ER  SG+++L+IL +K Q  +DGLSL+ E+P A+  +  W  L N   L  LS E+P      AWVL+SS+H    N    LTLG+RLIEG+T W
Subjt:  MVHFAERITSGLKYLVILKDKEQLIKDGLSLLAEEPLASTLSPTWQHL-NVKFLSELSRELPFEGNDKAWVLKSSMHGRNYNEDPELTLGRRLIEGETHW

Query:  NTIMKIHGDWSFIDFYWEWLEFFVGRNEKVLNQNRLRNVVMASLYTYDHCNDVVRAFCEGWCPRTNTLFTAMG
         T+ K+ G++ F D YWEWLE  VGRN ++L   RL   V ASLYTYD  +DVVR FCE WCP TNTL T  G
Subjt:  NTIMKIHGDWSFIDFYWEWLEFFVGRNEKVLNQNRLRNVVMASLYTYDHCNDVVRAFCEGWCPRTNTLFTAMG

A0A5A7V4F4 PMD domain-containing protein3.9e-4351.45Show/hide
Query:  MVHFAERITSGLKYLVILKDKEQLIKDGLSLLAEEPLASTLSPTWQHL-NVKFLSELSRELPFEGNDKAWVLKSSMHGRNYNEDPELTLGRRLIEGETHW
        MV+F ER  SG+++LVIL D+ QL +DGLSL+ E+P A   +  W  L N   L  L  E+P      AWVL+SS+H    N    LTLG+RLIEG+T W
Subjt:  MVHFAERITSGLKYLVILKDKEQLIKDGLSLLAEEPLASTLSPTWQHL-NVKFLSELSRELPFEGNDKAWVLKSSMHGRNYNEDPELTLGRRLIEGETHW

Query:  NTIMKIHGDWSFIDFYWEWLEFFVGRNEKVLNQNRLRNVVMASLYTYDHCNDVVRAFCEGWCPRTNTLFTAMG
         T++K+ G++ F D YWEWLE  VG+N ++L    L   V ASLYTYD   DVVRAFCE WCP TNTL T  G
Subjt:  NTIMKIHGDWSFIDFYWEWLEFFVGRNEKVLNQNRLRNVVMASLYTYDHCNDVVRAFCEGWCPRTNTLFTAMG

A0A5D3BRA8 PMD domain-containing protein3.9e-4351.45Show/hide
Query:  MVHFAERITSGLKYLVILKDKEQLIKDGLSLLAEEPLASTLSPTWQHL-NVKFLSELSRELPFEGNDKAWVLKSSMHGRNYNEDPELTLGRRLIEGETHW
        MV+F ER  SG+++LVIL D+ QL +DGLSL+ E+P A   +  W  L N   L  L  E+P      AWVL+SS+H    N    LTLG+RLIEG+T W
Subjt:  MVHFAERITSGLKYLVILKDKEQLIKDGLSLLAEEPLASTLSPTWQHL-NVKFLSELSRELPFEGNDKAWVLKSSMHGRNYNEDPELTLGRRLIEGETHW

Query:  NTIMKIHGDWSFIDFYWEWLEFFVGRNEKVLNQNRLRNVVMASLYTYDHCNDVVRAFCEGWCPRTNTLFTAMG
         T++K+ G++ F D YWEWLE  VG+N ++L    L   V ASLYTYD   DVVRAFCE WCP TNTL T  G
Subjt:  NTIMKIHGDWSFIDFYWEWLEFFVGRNEKVLNQNRLRNVVMASLYTYDHCNDVVRAFCEGWCPRTNTLFTAMG

A0A5D3BXQ4 Putative mitochondrial protein9.2e-4553.18Show/hide
Query:  MVHFAERITSGLKYLVILKDKEQLIKDGLSLLAEEPLASTLSPTWQHL-NVKFLSELSRELPFEGNDKAWVLKSSMHGRNYNEDPELTLGRRLIEGETHW
        MV+F ER  SG+++LVIL D+ Q  +DGLSL+ E+P A T +  W  L N   LS LS E+P      AWVL+S +H    N    LT G+RLIEG+THW
Subjt:  MVHFAERITSGLKYLVILKDKEQLIKDGLSLLAEEPLASTLSPTWQHL-NVKFLSELSRELPFEGNDKAWVLKSSMHGRNYNEDPELTLGRRLIEGETHW

Query:  NTIMKIHGDWSFIDFYWEWLEFFVGRNEKVLNQNRLRNVVMASLYTYDHCNDVVRAFCEGWCPRTNTLFTAMG
         T+ K+ G++ F D YWEWLE  VGRN ++L    L   V ASLYTYD  NDVVRAFCE WCP TNTL T  G
Subjt:  NTIMKIHGDWSFIDFYWEWLEFFVGRNEKVLNQNRLRNVVMASLYTYDHCNDVVRAFCEGWCPRTNTLFTAMG

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTGCATTTTGCCGAACGCATTACCTCCGGATTGAAGTATTTGGTGATTTTGAAGGATAAAGAGCAGTTAATTAAGGATGGACTGTCTTTACTTGCTGAAGAGCCCTT
AGCTAGTACTCTTTCCCCTACATGGCAACACCTGAATGTCAAGTTTCTGTCTGAACTATCAAGAGAGTTACCCTTTGAAGGCAATGATAAAGCTTGGGTCTTAAAATCTT
CAATGCATGGTCGAAATTATAATGAAGACCCCGAACTAACATTAGGGCGTCGCTTGATCGAAGGTGAAACTCATTGGAATACCATTATGAAGATTCATGGTGATTGGTCT
TTCATTGATTTTTATTGGGAATGGCTAGAATTTTTCGTTGGTCGTAATGAGAAAGTGCTTAACCAGAATCGCTTACGTAATGTGGTGATGGCTTCTCTCTATACTTATGA
TCATTGTAATGATGTGGTTCGTGCTTTCTGTGAAGGTTGGTGCCCCCGGACGAATACCCTTTTTACCGCAATGGGATGGAAAATGGAATTAAAATCCCATTTTTCCTTTT
ATTTCCCTTTTCTTTTATTTTTTTTTCCCTTTTTGTCCAAACCCATTTTCCTTTTCTTTTTATTTTTCTTTTTCTTTTTCTTTTTTTCTCTTTTCTCTCTCTCTCTCTCT
TTCTCCCCCGACCTAGCCGCACTTCACTCGAGCCGCCAGTGA
mRNA sequenceShow/hide mRNA sequence
ATGGTGCATTTTGCCGAACGCATTACCTCCGGATTGAAGTATTTGGTGATTTTGAAGGATAAAGAGCAGTTAATTAAGGATGGACTGTCTTTACTTGCTGAAGAGCCCTT
AGCTAGTACTCTTTCCCCTACATGGCAACACCTGAATGTCAAGTTTCTGTCTGAACTATCAAGAGAGTTACCCTTTGAAGGCAATGATAAAGCTTGGGTCTTAAAATCTT
CAATGCATGGTCGAAATTATAATGAAGACCCCGAACTAACATTAGGGCGTCGCTTGATCGAAGGTGAAACTCATTGGAATACCATTATGAAGATTCATGGTGATTGGTCT
TTCATTGATTTTTATTGGGAATGGCTAGAATTTTTCGTTGGTCGTAATGAGAAAGTGCTTAACCAGAATCGCTTACGTAATGTGGTGATGGCTTCTCTCTATACTTATGA
TCATTGTAATGATGTGGTTCGTGCTTTCTGTGAAGGTTGGTGCCCCCGGACGAATACCCTTTTTACCGCAATGGGATGGAAAATGGAATTAAAATCCCATTTTTCCTTTT
ATTTCCCTTTTCTTTTATTTTTTTTTCCCTTTTTGTCCAAACCCATTTTCCTTTTCTTTTTATTTTTCTTTTTCTTTTTCTTTTTTTCTCTTTTCTCTCTCTCTCTCTCT
TTCTCCCCCGACCTAGCCGCACTTCACTCGAGCCGCCAGTGA
Protein sequenceShow/hide protein sequence
MVHFAERITSGLKYLVILKDKEQLIKDGLSLLAEEPLASTLSPTWQHLNVKFLSELSRELPFEGNDKAWVLKSSMHGRNYNEDPELTLGRRLIEGETHWNTIMKIHGDWS
FIDFYWEWLEFFVGRNEKVLNQNRLRNVVMASLYTYDHCNDVVRAFCEGWCPRTNTLFTAMGWKMELKSHFSFYFPFLLFFFPFLSKPIFLFFLFFFFFFFFSLFSLSLS
FSPDLAALHSSRQ