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Sed0017392 (gene) of Chayote v1 genome

Gene IDSed0017392
OrganismSechium edule (Chayote v1)
DescriptionTranscription factor UPBEAT1
Genome locationLG06:35645596..35645898
RNA-Seq ExpressionSed0017392
SyntenySed0017392
Gene Ontology termsGO:0006355 - regulation of transcription, DNA-templated (biological process)
GO:0005488 - binding (molecular function)
InterPro domainsIPR044549 - Transcription factor IBH1-like, bHLH domain
IPR044660 - Transcription factor IBH1-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
GFZ04515.1 hypothetical protein Acr_17g0000870 [Actinidia rufa]1.2e-0654.55Show/hide
Query:  RSEKKVCSKRIRRLRKMIPKGESMEMNGLFRETADYIMGLQMKVRMMQALVYVLN
        R  K V  K++R LRK++PK ESM ++GLFR+TA+YI+ LQM+V++MQ +V VL+
Subjt:  RSEKKVCSKRIRRLRKMIPKGESMEMNGLFRETADYIMGLQMKVRMMQALVYVLN

KAA0038125.1 basic helix-loop-helix protein [Cucumis melo var. makuwa]1.1e-1766.28Show/hide
Query:  SNDHVSDRRITKRVERRQ---PSTSITRSEKKVCSKRIRRLRKMIPKGESMEMNGLFRETADYIMGLQMKVRMMQALVYVLNDYDE
        + D VSDRRI K+V +++    S     SEK++C KRIR+LRKMIPK ESME+NGLFRETADYI+ LQMKVRMMQALV+VLN  DE
Subjt:  SNDHVSDRRITKRVERRQ---PSTSITRSEKKVCSKRIRRLRKMIPKGESMEMNGLFRETADYIMGLQMKVRMMQALVYVLNDYDE

KAG1365315.1 Transcription factor UPBEAT1 [Cocos nucifera]4.0e-0752.54Show/hide
Query:  TRSEKKVCSKRIRRLRKMIPKGESMEMNGLFRETADYIMGLQMKVRMMQALVYVLNDYD
        +R  +    +R+++LR+++P GESME+ GLFRETADYIM LQM+V++MQ +V VL+  D
Subjt:  TRSEKKVCSKRIRRLRKMIPKGESMEMNGLFRETADYIMGLQMKVRMMQALVYVLNDYD

KGN58133.1 hypothetical protein Csa_017541 [Cucumis sativus]2.9e-1866.28Show/hide
Query:  SNDHVSDRRITKRVERRQ---PSTSITRSEKKVCSKRIRRLRKMIPKGESMEMNGLFRETADYIMGLQMKVRMMQALVYVLNDYDE
        + D VSDRRI K+V +++    S S   SEK++C KRIRRL+KM+PK ESME+NGLFRETADYI+ LQMKVRMMQALV+VLN  DE
Subjt:  SNDHVSDRRITKRVERRQ---PSTSITRSEKKVCSKRIRRLRKMIPKGESMEMNGLFRETADYIMGLQMKVRMMQALVYVLNDYDE

XP_041022171.1 transcription factor UPBEAT1 [Juglans microcarpa x Juglans regia]6.8e-0759.62Show/hide
Query:  KRIRRLRKMIPKGESM-EMNGLFRETADYIMGLQMKVRMMQALVYVLNDYDE
        +R+R L+++IP GESM  ++GLFRETADYI+ LQM+VR+MQ  V VL ++DE
Subjt:  KRIRRLRKMIPKGESM-EMNGLFRETADYIMGLQMKVRMMQALVYVLNDYDE

TrEMBL top hitse value%identityAlignment
A0A0A0L8J6 Uncharacterized protein1.4e-1866.28Show/hide
Query:  SNDHVSDRRITKRVERRQ---PSTSITRSEKKVCSKRIRRLRKMIPKGESMEMNGLFRETADYIMGLQMKVRMMQALVYVLNDYDE
        + D VSDRRI K+V +++    S S   SEK++C KRIRRL+KM+PK ESME+NGLFRETADYI+ LQMKVRMMQALV+VLN  DE
Subjt:  SNDHVSDRRITKRVERRQ---PSTSITRSEKKVCSKRIRRLRKMIPKGESMEMNGLFRETADYIMGLQMKVRMMQALVYVLNDYDE

A0A2N9IQ45 Uncharacterized protein4.3e-0743.75Show/hide
Query:  HVSDRRITKRVERRQPSTSITRSEKKVCSKRIRRLRKMIPKGESMEMNGLFRETADYIMGLQMKVRMMQALVYVLNDYDE
        HV  +R T+ + +R      +R +     +R++ L+K+IP G+SM ++GLF+ETADYI+ LQM+VR MQ +V VL   DE
Subjt:  HVSDRRITKRVERRQPSTSITRSEKKVCSKRIRRLRKMIPKGESMEMNGLFRETADYIMGLQMKVRMMQALVYVLNDYDE

A0A438IXS1 Transcription factor UPBEAT15.6e-0743.75Show/hide
Query:  RRITKRVER----RQPSTSITRSEKKVCSKRIRRLRKMIPKGESMEMNGLFRETADYIMGLQMKVRMMQALVYVLNDYDE
        RR+ +R +R    R+     +R       +R+R L+K++P G+SM ++GLFRETADYI+ LQM+V +MQ +V VL+D D+
Subjt:  RRITKRVER----RQPSTSITRSEKKVCSKRIRRLRKMIPKGESMEMNGLFRETADYIMGLQMKVRMMQALVYVLNDYDE

A0A5A7T9M0 Basic helix-loop-helix protein5.4e-1866.28Show/hide
Query:  SNDHVSDRRITKRVERRQ---PSTSITRSEKKVCSKRIRRLRKMIPKGESMEMNGLFRETADYIMGLQMKVRMMQALVYVLNDYDE
        + D VSDRRI K+V +++    S     SEK++C KRIR+LRKMIPK ESME+NGLFRETADYI+ LQMKVRMMQALV+VLN  DE
Subjt:  SNDHVSDRRITKRVERRQ---PSTSITRSEKKVCSKRIRRLRKMIPKGESMEMNGLFRETADYIMGLQMKVRMMQALVYVLNDYDE

F6HZB3 BHLH domain-containing protein5.6e-0743.75Show/hide
Query:  RRITKRVER----RQPSTSITRSEKKVCSKRIRRLRKMIPKGESMEMNGLFRETADYIMGLQMKVRMMQALVYVLNDYDE
        RR+ +R +R    R+     +R       +R+R L+K++P G+SM ++GLFRETADYI+ LQM+V +MQ +V VL+D D+
Subjt:  RRITKRVER----RQPSTSITRSEKKVCSKRIRRLRKMIPKGESMEMNGLFRETADYIMGLQMKVRMMQALVYVLNDYDE

SwissProt top hitse value%identityAlignment
O22901 Transcription factor UPBEAT11.3e-0536.11Show/hide
Query:  ITKRVERRQPSTSITRSEKKVCSKRIRRLRKMIPKGESME-MNGLFRETADYIMGLQMKVRMMQALVYVLND
        + K + R + S   +R   +   +R++ L++++P  ++ E ++GLFR+TADYI+ L+MKV++MQ +V VL +
Subjt:  ITKRVERRQPSTSITRSEKKVCSKRIRRLRKMIPKGESME-MNGLFRETADYIMGLQMKVRMMQALVYVLND

Arabidopsis top hitse value%identityAlignment
AT2G47270.1 sequence-specific DNA binding transcription factors;transcription regulators9.4e-0736.11Show/hide
Query:  ITKRVERRQPSTSITRSEKKVCSKRIRRLRKMIPKGESME-MNGLFRETADYIMGLQMKVRMMQALVYVLND
        + K + R + S   +R   +   +R++ L++++P  ++ E ++GLFR+TADYI+ L+MKV++MQ +V VL +
Subjt:  ITKRVERRQPSTSITRSEKKVCSKRIRRLRKMIPKGESME-MNGLFRETADYIMGLQMKVRMMQALVYVLND


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAAGTTTCTTTGAAAGATACGCTTCGTAAAAACGAAGAACGAGGTGACTCTAATGATCATGTTTCGGACAGGAGAATCACGAAACGAGTCGAGAGAAGGCAACCGAG
CACGTCGATAACGAGGTCGGAGAAGAAGGTTTGCTCTAAAAGGATTAGGAGGCTGAGAAAGATGATTCCAAAGGGTGAATCAATGGAGATGAATGGGCTTTTTAGAGAGA
CAGCTGATTATATTATGGGGTTACAAATGAAGGTGAGGATGATGCAAGCTTTGGTTTATGTGTTGAATGACTATGATGAATAA
mRNA sequenceShow/hide mRNA sequence
ATGAAAGTTTCTTTGAAAGATACGCTTCGTAAAAACGAAGAACGAGGTGACTCTAATGATCATGTTTCGGACAGGAGAATCACGAAACGAGTCGAGAGAAGGCAACCGAG
CACGTCGATAACGAGGTCGGAGAAGAAGGTTTGCTCTAAAAGGATTAGGAGGCTGAGAAAGATGATTCCAAAGGGTGAATCAATGGAGATGAATGGGCTTTTTAGAGAGA
CAGCTGATTATATTATGGGGTTACAAATGAAGGTGAGGATGATGCAAGCTTTGGTTTATGTGTTGAATGACTATGATGAATAA
Protein sequenceShow/hide protein sequence
MKVSLKDTLRKNEERGDSNDHVSDRRITKRVERRQPSTSITRSEKKVCSKRIRRLRKMIPKGESMEMNGLFRETADYIMGLQMKVRMMQALVYVLNDYDE