; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Sed0017442 (gene) of Chayote v1 genome

Gene IDSed0017442
OrganismSechium edule (Chayote v1)
Descriptiontranscriptional regulator TAC1-like
Genome locationLG01:8368573..8368935
RNA-Seq ExpressionSed0017442
SyntenySed0017442
Gene Ontology termsNA
InterPro domainsIPR013087 - Zinc finger C2H2-type
IPR036236 - Zinc finger C2H2 superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004145329.1 transcriptional regulator TAC1 [Cucumis sativus]2.9e-0433.89Show/hide
Query:  KEQINDRDQSRDKSYRCFICRKKFRNGKALGCHMNSHRPKDQKVKLKQ----SSAGSSSRTMVVDTSKTMST------------------------QAVS
        +E+ +  +QS  +SY C  C++ F N +ALG HMN HR   +K KLKQ    SS  SS   MVVDT K MST                        +   
Subjt:  KEQINDRDQSRDKSYRCFICRKKFRNGKALGCHMNSHRPKDQKVKLKQ----SSAGSSSRTMVVDTSKTMST------------------------QAVS

Query:  TTVENQKLEVDLEPQISNEGQNLEV---------------------------DLELRLGP----STPSSA----TTRHFF
         + E Q+L + +E   SN  QNLE+                           DLELRLGP    ST SS+     T HFF
Subjt:  TTVENQKLEVDLEPQISNEGQNLEV---------------------------DLELRLGP----STPSSA----TTRHFF
XP_008457447.1 PREDICTED: transcriptional regulator TAC1-like [Cucumis melo]9.9e-0534.48Show/hide
Query:  DQSRDKSYRCFICRKKFRNGKALGCHMNSHRPKDQKVKLKQ----SSAGSSSRTMVVDTSKTMST-------------------------QAVSTTVENQ
        +QS  +SY C  C++ F N +ALG HMN HR   +K KLKQ    SS  SS   MVVDT K MST                         +    + E Q
Subjt:  DQSRDKSYRCFICRKKFRNGKALGCHMNSHRPKDQKVKLKQ----SSAGSSSRTMVVDTSKTMST-------------------------QAVSTTVENQ

Query:  KLEVDLEPQISNEGQNLEV---------------------------DLELRLGP----STPSSA----TTRHFF
        +L + +E   SN  QNLE+                           DLELRLGP    STPS++     T HFF
Subjt:  KLEVDLEPQISNEGQNLEV---------------------------DLELRLGP----STPSSA----TTRHFF
TrEMBL top hitse value%identityAlignment
A0A0A0LXG2 C2H2-type domain-containing protein1.4e-0433.89Show/hide
Query:  KEQINDRDQSRDKSYRCFICRKKFRNGKALGCHMNSHRPKDQKVKLKQ----SSAGSSSRTMVVDTSKTMST------------------------QAVS
        +E+ +  +QS  +SY C  C++ F N +ALG HMN HR   +K KLKQ    SS  SS   MVVDT K MST                        +   
Subjt:  KEQINDRDQSRDKSYRCFICRKKFRNGKALGCHMNSHRPKDQKVKLKQ----SSAGSSSRTMVVDTSKTMST------------------------QAVS

Query:  TTVENQKLEVDLEPQISNEGQNLEV---------------------------DLELRLGP----STPSSA----TTRHFF
         + E Q+L + +E   SN  QNLE+                           DLELRLGP    ST SS+     T HFF
Subjt:  TTVENQKLEVDLEPQISNEGQNLEV---------------------------DLELRLGP----STPSSA----TTRHFF
A0A1S3C679 transcriptional regulator TAC1-like4.8e-0534.48Show/hide
Query:  DQSRDKSYRCFICRKKFRNGKALGCHMNSHRPKDQKVKLKQ----SSAGSSSRTMVVDTSKTMST-------------------------QAVSTTVENQ
        +QS  +SY C  C++ F N +ALG HMN HR   +K KLKQ    SS  SS   MVVDT K MST                         +    + E Q
Subjt:  DQSRDKSYRCFICRKKFRNGKALGCHMNSHRPKDQKVKLKQ----SSAGSSSRTMVVDTSKTMST-------------------------QAVSTTVENQ

Query:  KLEVDLEPQISNEGQNLEV---------------------------DLELRLGP----STPSSA----TTRHFF
        +L + +E   SN  QNLE+                           DLELRLGP    STPS++     T HFF
Subjt:  KLEVDLEPQISNEGQNLEV---------------------------DLELRLGP----STPSSA----TTRHFF
A0A5A7VKP9 Transcriptional regulator TAC1-like4.8e-0534.48Show/hide
Query:  DQSRDKSYRCFICRKKFRNGKALGCHMNSHRPKDQKVKLKQ----SSAGSSSRTMVVDTSKTMST-------------------------QAVSTTVENQ
        +QS  +SY C  C++ F N +ALG HMN HR   +K KLKQ    SS  SS   MVVDT K MST                         +    + E Q
Subjt:  DQSRDKSYRCFICRKKFRNGKALGCHMNSHRPKDQKVKLKQ----SSAGSSSRTMVVDTSKTMST-------------------------QAVSTTVENQ

Query:  KLEVDLEPQISNEGQNLEV---------------------------DLELRLGP----STPSSA----TTRHFF
        +L + +E   SN  QNLE+                           DLELRLGP    STPS++     T HFF
Subjt:  KLEVDLEPQISNEGQNLEV---------------------------DLELRLGP----STPSSA----TTRHFF
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT3G23130.1 C2H2 and C2HC zinc fingers superfamily protein1.8e-0444.19Show/hide
Query:  KSYRCFICRKKFRNGKALGCHMNSHRPKDQKVKLKQSSAGSSS
        +SY C  C+++FR+ +ALG HMN HR    +++L+QS + SS+
Subjt:  KSYRCFICRKKFRNGKALGCHMNSHRPKDQKVKLKQSSAGSSS

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGCTCAAAAGAACAAATTAATGATAGGGATCAATCAAGAGATAAATCTTATAGGTGCTTTATTTGCCGGAAGAAATTCAGAAATGGAAAAGCTTTAGGATGCCATAT
GAACTCACATAGACCAAAAGATCAGAAGGTCAAGCTCAAGCAATCGTCGGCAGGGTCCTCGTCGAGAACGATGGTTGTAGATACCTCGAAGACAATGTCGACCCAGGCGG
TGTCAACGACTGTCGAGAATCAAAAGTTGGAGGTGGATCTTGAGCCTCAGATTTCAAATGAGGGTCAAAACTTGGAGGTGGATTTAGAGCTTAGGTTAGGACCTTCAACT
CCATCATCAGCTACTACTAGACACTTCTTTTAA
mRNA sequenceShow/hide mRNA sequence
ATGGGCTCAAAAGAACAAATTAATGATAGGGATCAATCAAGAGATAAATCTTATAGGTGCTTTATTTGCCGGAAGAAATTCAGAAATGGAAAAGCTTTAGGATGCCATAT
GAACTCACATAGACCAAAAGATCAGAAGGTCAAGCTCAAGCAATCGTCGGCAGGGTCCTCGTCGAGAACGATGGTTGTAGATACCTCGAAGACAATGTCGACCCAGGCGG
TGTCAACGACTGTCGAGAATCAAAAGTTGGAGGTGGATCTTGAGCCTCAGATTTCAAATGAGGGTCAAAACTTGGAGGTGGATTTAGAGCTTAGGTTAGGACCTTCAACT
CCATCATCAGCTACTACTAGACACTTCTTTTAA
Protein sequenceShow/hide protein sequence
MGSKEQINDRDQSRDKSYRCFICRKKFRNGKALGCHMNSHRPKDQKVKLKQSSAGSSSRTMVVDTSKTMSTQAVSTTVENQKLEVDLEPQISNEGQNLEVDLELRLGPST
PSSATTRHFF