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Sed0017448 (gene) of Chayote v1 genome

Gene IDSed0017448
OrganismSechium edule (Chayote v1)
Descriptionnigrin b-like
Genome locationLG04:30895610..30896802
RNA-Seq ExpressionSed0017448
SyntenySed0017448
Gene Ontology termsNA
InterPro domainsIPR000772 - Ricin B, lectin domain
IPR035992 - Ricin B-like lectins


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0059853.1 nigrin b-like [Cucumis melo var. makuwa]5.4e-0431.43Show/hide
Query:  DFNVPAELLPCTNERPSQSWIYSQDQSIKTVAEVPLCLIYDPYVNQQTPATVRACHKSSEEAKKWKIWPDGTITHLATPRHVLTSSFSVPHSRVNVEQNT
        D +VP +L PC   + +Q W    D +I+T+ +   CL+ + + +  +   +  C+K+    K WK++PDGT+TH+ +   VLTS  +  ++   +E NT
Subjt:  DFNVPAELLPCTNERPSQSWIYSQDQSIKTVAEVPLCLIYDPYVNQQTPATVRACHKSSEEAKKWKIWPDGTITHLATPRHVLTSSFSVPHSRVNVEQNT

Query:  YAASQ
         A +Q
Subjt:  YAASQ

XP_016903609.1 PREDICTED: nigrin b-like [Cucumis melo]5.4e-0431.43Show/hide
Query:  DFNVPAELLPCTNERPSQSWIYSQDQSIKTVAEVPLCLIYDPYVNQQTPATVRACHKSSEEAKKWKIWPDGTITHLATPRHVLTSSFSVPHSRVNVEQNT
        D +VP +L PC   + +Q W    D +I+T+ +   CL+ + + +  +   +  C+K+    K WK++PDGT+TH+ +   VLTS  +  ++   +E NT
Subjt:  DFNVPAELLPCTNERPSQSWIYSQDQSIKTVAEVPLCLIYDPYVNQQTPATVRACHKSSEEAKKWKIWPDGTITHLATPRHVLTSSFSVPHSRVNVEQNT

Query:  YAASQ
         A +Q
Subjt:  YAASQ

XP_022150387.1 nigrin b-like [Momordica charantia]6.4e-0527.59Show/hide
Query:  KMTKVAICII-----VGLFAMAASNTMAEDIDYVQSNNIPIHISIGQSKHKKCLDFNPPLYNSMNYDFNVPAELLPCTNERPSQSWIYSQDQSIKTVAEV
        KM  + +C++     VG+  ++A++T    I + +S +I         +   CLD    +    N D ++P +L  C N +  Q W    D +I+++ + 
Subjt:  KMTKVAICII-----VGLFAMAASNTMAEDIDYVQSNNIPIHISIGQSKHKKCLDFNPPLYNSMNYDFNVPAELLPCTNERPSQSWIYSQDQSIKTVAEV

Query:  PLCLIYDPYVNQQTPAT---VRACHKSSEEAKKWKIWPDGTITHLATPRHVLTSSFSVPHSRVNVEQNTYAASQ
          CL+     N ++P +   +  C+ ++ + K WK++PDGT+ H+ +   VLT+  + PH+   +E NTYAA Q
Subjt:  PLCLIYDPYVNQQTPAT---VRACHKSSEEAKKWKIWPDGTITHLATPRHVLTSSFSVPHSRVNVEQNTYAASQ

TrEMBL top hitse value%identityAlignment
A0A1S4E5V9 nigrin b-like2.6e-0431.43Show/hide
Query:  DFNVPAELLPCTNERPSQSWIYSQDQSIKTVAEVPLCLIYDPYVNQQTPATVRACHKSSEEAKKWKIWPDGTITHLATPRHVLTSSFSVPHSRVNVEQNT
        D +VP +L PC   + +Q W    D +I+T+ +   CL+ + + +  +   +  C+K+    K WK++PDGT+TH+ +   VLTS  +  ++   +E NT
Subjt:  DFNVPAELLPCTNERPSQSWIYSQDQSIKTVAEVPLCLIYDPYVNQQTPATVRACHKSSEEAKKWKIWPDGTITHLATPRHVLTSSFSVPHSRVNVEQNT

Query:  YAASQ
         A +Q
Subjt:  YAASQ

A0A5A7UV90 Nigrin b-like2.6e-0431.43Show/hide
Query:  DFNVPAELLPCTNERPSQSWIYSQDQSIKTVAEVPLCLIYDPYVNQQTPATVRACHKSSEEAKKWKIWPDGTITHLATPRHVLTSSFSVPHSRVNVEQNT
        D +VP +L PC   + +Q W    D +I+T+ +   CL+ + + +  +   +  C+K+    K WK++PDGT+TH+ +   VLTS  +  ++   +E NT
Subjt:  DFNVPAELLPCTNERPSQSWIYSQDQSIKTVAEVPLCLIYDPYVNQQTPATVRACHKSSEEAKKWKIWPDGTITHLATPRHVLTSSFSVPHSRVNVEQNT

Query:  YAASQ
         A +Q
Subjt:  YAASQ

A0A6J1DVT2 nigrin b-like3.1e-0527.59Show/hide
Query:  KMTKVAICII-----VGLFAMAASNTMAEDIDYVQSNNIPIHISIGQSKHKKCLDFNPPLYNSMNYDFNVPAELLPCTNERPSQSWIYSQDQSIKTVAEV
        KM  + +C++     VG+  ++A++T    I + +S +I         +   CLD    +    N D ++P +L  C N +  Q W    D +I+++ + 
Subjt:  KMTKVAICII-----VGLFAMAASNTMAEDIDYVQSNNIPIHISIGQSKHKKCLDFNPPLYNSMNYDFNVPAELLPCTNERPSQSWIYSQDQSIKTVAEV

Query:  PLCLIYDPYVNQQTPAT---VRACHKSSEEAKKWKIWPDGTITHLATPRHVLTSSFSVPHSRVNVEQNTYAASQ
          CL+     N ++P +   +  C+ ++ + K WK++PDGT+ H+ +   VLT+  + PH+   +E NTYAA Q
Subjt:  PLCLIYDPYVNQQTPAT---VRACHKSSEEAKKWKIWPDGTITHLATPRHVLTSSFSVPHSRVNVEQNTYAASQ

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGATGAAGATGACAAAAGTTGCAATATGCATCATTGTTGGGCTTTTTGCAATGGCTGCCTCCAATACCATGGCTGAGGACATTGATTATGTCCAAAGCAATAACATACC
GATACATATTTCAATTGGACAATCTAAACATAAGAAGTGTTTGGATTTCAACCCTCCTTTGTACAATAGCATGAACTACGACTTCAACGTTCCAGCCGAACTACTACCAT
GCACGAACGAGAGACCGAGTCAATCCTGGATTTATTCTCAAGACCAGTCTATTAAAACTGTAGCCGAAGTACCCTTGTGCTTGATCTATGACCCCTACGTCAATCAACAA
ACCCCTGCTACCGTAAGGGCTTGCCATAAATCGAGCGAAGAAGCGAAGAAATGGAAGATCTGGCCGGATGGCACCATCACCCACCTCGCCACGCCCCGCCATGTCCTCAC
ATCGTCTTTTTCTGTACCGCATTCGCGTGTGAATGTCGAGCAAAACACATATGCTGCATCCCAGGGGTCTAGGGGCTGGCGAGCTAGGCCCAACCCTTCACGGGCCAAGG
GTCGAACTAAATCTGACCCTTCACGGGCTAGGCTCGGACCTATTTTTGGCGGATTCCAACCTCTTATGAGCTTGAGTTACGCCTCGAGCTCTTTTAGCTTGCTGGTCTCA
TTAGACTTTGGCTGA
mRNA sequenceShow/hide mRNA sequence
ATGATGAAGATGACAAAAGTTGCAATATGCATCATTGTTGGGCTTTTTGCAATGGCTGCCTCCAATACCATGGCTGAGGACATTGATTATGTCCAAAGCAATAACATACC
GATACATATTTCAATTGGACAATCTAAACATAAGAAGTGTTTGGATTTCAACCCTCCTTTGTACAATAGCATGAACTACGACTTCAACGTTCCAGCCGAACTACTACCAT
GCACGAACGAGAGACCGAGTCAATCCTGGATTTATTCTCAAGACCAGTCTATTAAAACTGTAGCCGAAGTACCCTTGTGCTTGATCTATGACCCCTACGTCAATCAACAA
ACCCCTGCTACCGTAAGGGCTTGCCATAAATCGAGCGAAGAAGCGAAGAAATGGAAGATCTGGCCGGATGGCACCATCACCCACCTCGCCACGCCCCGCCATGTCCTCAC
ATCGTCTTTTTCTGTACCGCATTCGCGTGTGAATGTCGAGCAAAACACATATGCTGCATCCCAGGGGTCTAGGGGCTGGCGAGCTAGGCCCAACCCTTCACGGGCCAAGG
GTCGAACTAAATCTGACCCTTCACGGGCTAGGCTCGGACCTATTTTTGGCGGATTCCAACCTCTTATGAGCTTGAGTTACGCCTCGAGCTCTTTTAGCTTGCTGGTCTCA
TTAGACTTTGGCTGA
Protein sequenceShow/hide protein sequence
MMKMTKVAICIIVGLFAMAASNTMAEDIDYVQSNNIPIHISIGQSKHKKCLDFNPPLYNSMNYDFNVPAELLPCTNERPSQSWIYSQDQSIKTVAEVPLCLIYDPYVNQQ
TPATVRACHKSSEEAKKWKIWPDGTITHLATPRHVLTSSFSVPHSRVNVEQNTYAASQGSRGWRARPNPSRAKGRTKSDPSRARLGPIFGGFQPLMSLSYASSSFSLLVS
LDFG