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Sed0017454 (gene) of Chayote v1 genome

Gene IDSed0017454
OrganismSechium edule (Chayote v1)
Description30S ribosomal protein S18, chloroplastic
Genome locationContig00297:126793..127098
RNA-Seq ExpressionSed0017454
SyntenySed0017454
Gene Ontology termsGO:0006412 - translation (biological process)
GO:0005840 - ribosome (cellular component)
GO:0009507 - chloroplast (cellular component)
GO:0003735 - structural constituent of ribosome (molecular function)
GO:0019843 - rRNA binding (molecular function)
InterPro domainsIPR001648 - Ribosomal protein S18
IPR018275 - Ribosomal protein S18, conserved site
IPR036870 - Ribosomal protein S18 superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
QJR52978.1 ribosomal protein S18 [Herpetospermum pedunculosum]1.7e-4297.03Show/hide
Query:  MDKSKRLLLKSKRSFRKRLPPIQSGDRIDYRNMSLISRFISEQGKILSRRVNRLTLKQQRLITIAIKQARILSLLPFLNNEKQFERRESTARTIGLRTRN
        MDKSKRLLLKSKRSFR+RLPPIQSGDRIDYRNMSLISRFISEQGKILSRR+NRLTLKQQRLITIAIKQARILSLLPFLNNEKQFER ESTARTIGLRTRN
Subjt:  MDKSKRLLLKSKRSFRKRLPPIQSGDRIDYRNMSLISRFISEQGKILSRRVNRLTLKQQRLITIAIKQARILSLLPFLNNEKQFERRESTARTIGLRTRN

Query:  K
        K
Subjt:  K
YP_009317408.1 ribosomal protein S18 [Coccinia grandis]5.9e-4399.01Show/hide
Query:  MDKSKRLLLKSKRSFRKRLPPIQSGDRIDYRNMSLISRFISEQGKILSRRVNRLTLKQQRLITIAIKQARILSLLPFLNNEKQFERRESTARTIGLRTRN
        MDKSKRLLLKSKRSFRKRLPPIQSGDRIDYRNMSLISRFISEQGKILSRRVNRLTLKQQRLITIAIKQARILSLLPFLNNEKQFER ESTARTIGLRTRN
Subjt:  MDKSKRLLLKSKRSFRKRLPPIQSGDRIDYRNMSLISRFISEQGKILSRRVNRLTLKQQRLITIAIKQARILSLLPFLNNEKQFERRESTARTIGLRTRN

Query:  K
        K
Subjt:  K
YP_009456168.1 ribosomal protein S18 [Lagenaria siceraria]1.3e-4298.02Show/hide
Query:  MDKSKRLLLKSKRSFRKRLPPIQSGDRIDYRNMSLISRFISEQGKILSRRVNRLTLKQQRLITIAIKQARILSLLPFLNNEKQFERRESTARTIGLRTRN
        MDKSKRLLLKSKRSFR+RLPPIQSGDRIDYRNMSLISRFISEQGKILSRRVNRLTLKQQRLITIAIKQARILSLLPFLNNEKQFER ESTARTIGLRTRN
Subjt:  MDKSKRLLLKSKRSFRKRLPPIQSGDRIDYRNMSLISRFISEQGKILSRRVNRLTLKQQRLITIAIKQARILSLLPFLNNEKQFERRESTARTIGLRTRN

Query:  K
        K
Subjt:  K
YP_009753896.1 ribosomal protein S18 [Trichosanthes lobata]1.7e-4298.02Show/hide
Query:  MDKSKRLLLKSKRSFRKRLPPIQSGDRIDYRNMSLISRFISEQGKILSRRVNRLTLKQQRLITIAIKQARILSLLPFLNNEKQFERRESTARTIGLRTRN
        MDKSKRLLLKSKRSFRKRLPPIQSGDRIDYRNMSLISRFISEQGKILSRRVNRLTLKQQRLITIAIKQARILSLLPFLNNEKQFER EST RTIGLRTRN
Subjt:  MDKSKRLLLKSKRSFRKRLPPIQSGDRIDYRNMSLISRFISEQGKILSRRVNRLTLKQQRLITIAIKQARILSLLPFLNNEKQFERRESTARTIGLRTRN

Query:  K
        K
Subjt:  K
YP_009945439.1 ribosomal protein S18 [Sechium edule]1.2e-43100Show/hide
Query:  MDKSKRLLLKSKRSFRKRLPPIQSGDRIDYRNMSLISRFISEQGKILSRRVNRLTLKQQRLITIAIKQARILSLLPFLNNEKQFERRESTARTIGLRTRN
        MDKSKRLLLKSKRSFRKRLPPIQSGDRIDYRNMSLISRFISEQGKILSRRVNRLTLKQQRLITIAIKQARILSLLPFLNNEKQFERRESTARTIGLRTRN
Subjt:  MDKSKRLLLKSKRSFRKRLPPIQSGDRIDYRNMSLISRFISEQGKILSRRVNRLTLKQQRLITIAIKQARILSLLPFLNNEKQFERRESTARTIGLRTRN

Query:  K
        K
Subjt:  K
TrEMBL top hitse value%identityAlignment
A0A2Z2CGJ8 30S ribosomal protein S18, chloroplastic2.9e-4399.01Show/hide
Query:  MDKSKRLLLKSKRSFRKRLPPIQSGDRIDYRNMSLISRFISEQGKILSRRVNRLTLKQQRLITIAIKQARILSLLPFLNNEKQFERRESTARTIGLRTRN
        MDKSKRLLLKSKRSFRKRLPPIQSGDRIDYRNMSLISRFISEQGKILSRRVNRLTLKQQRLITIAIKQARILSLLPFLNNEKQFER ESTARTIGLRTRN
Subjt:  MDKSKRLLLKSKRSFRKRLPPIQSGDRIDYRNMSLISRFISEQGKILSRRVNRLTLKQQRLITIAIKQARILSLLPFLNNEKQFERRESTARTIGLRTRN

Query:  K
        K
Subjt:  K
A0A346QNH8 30S ribosomal protein S18, chloroplastic2.9e-4399.01Show/hide
Query:  MDKSKRLLLKSKRSFRKRLPPIQSGDRIDYRNMSLISRFISEQGKILSRRVNRLTLKQQRLITIAIKQARILSLLPFLNNEKQFERRESTARTIGLRTRN
        MDKSKRLLLKSKRSFRKRLPPIQSGDRIDYRNMSLISRFISEQGKILSRRVNRLTLKQQRLITIAIKQARILSLLPFLNNEKQFER ESTARTIGLRTRN
Subjt:  MDKSKRLLLKSKRSFRKRLPPIQSGDRIDYRNMSLISRFISEQGKILSRRVNRLTLKQQRLITIAIKQARILSLLPFLNNEKQFERRESTARTIGLRTRN

Query:  K
        K
Subjt:  K
A0A410HFA4 30S ribosomal protein S18, chloroplastic2.9e-4399.01Show/hide
Query:  MDKSKRLLLKSKRSFRKRLPPIQSGDRIDYRNMSLISRFISEQGKILSRRVNRLTLKQQRLITIAIKQARILSLLPFLNNEKQFERRESTARTIGLRTRN
        MDKSKRLLLKSKRSFRKRLPPIQSGDRIDYRNMSLISRFISEQGKILSRRVNRLTLKQQRLITIAIKQARILSLLPFLNNEKQFER ESTARTIGLRTRN
Subjt:  MDKSKRLLLKSKRSFRKRLPPIQSGDRIDYRNMSLISRFISEQGKILSRRVNRLTLKQQRLITIAIKQARILSLLPFLNNEKQFERRESTARTIGLRTRN

Query:  K
        K
Subjt:  K
A0A6H0EQL7 30S ribosomal protein S18, chloroplastic5.8e-44100Show/hide
Query:  MDKSKRLLLKSKRSFRKRLPPIQSGDRIDYRNMSLISRFISEQGKILSRRVNRLTLKQQRLITIAIKQARILSLLPFLNNEKQFERRESTARTIGLRTRN
        MDKSKRLLLKSKRSFRKRLPPIQSGDRIDYRNMSLISRFISEQGKILSRRVNRLTLKQQRLITIAIKQARILSLLPFLNNEKQFERRESTARTIGLRTRN
Subjt:  MDKSKRLLLKSKRSFRKRLPPIQSGDRIDYRNMSLISRFISEQGKILSRRVNRLTLKQQRLITIAIKQARILSLLPFLNNEKQFERRESTARTIGLRTRN

Query:  K
        K
Subjt:  K
A0A6M3RTS7 30S ribosomal protein S18, chloroplastic2.9e-4399.01Show/hide
Query:  MDKSKRLLLKSKRSFRKRLPPIQSGDRIDYRNMSLISRFISEQGKILSRRVNRLTLKQQRLITIAIKQARILSLLPFLNNEKQFERRESTARTIGLRTRN
        MDKSKRLLLKSKRSFRKRLPPIQSGDRIDYRNMSLISRFISEQGKILSRRVNRLTLKQQRLITIAIKQARILSLLPFLNNEKQFER ESTARTIGLRTRN
Subjt:  MDKSKRLLLKSKRSFRKRLPPIQSGDRIDYRNMSLISRFISEQGKILSRRVNRLTLKQQRLITIAIKQARILSLLPFLNNEKQFERRESTARTIGLRTRN

Query:  K
        K
Subjt:  K
SwissProt top hitse value%identityAlignment
A0ZZ57 30S ribosomal protein S18, chloroplastic2.8e-4394.06Show/hide
Query:  MDKSKRLLLKSKRSFRKRLPPIQSGDRIDYRNMSLISRFISEQGKILSRRVNRLTLKQQRLITIAIKQARILSLLPFLNNEKQFERRESTARTIGLRTRN
        MDKSKRL LKSKRSFR+RLPPIQSGDRIDYRNMSLISRFISEQGKILSRRVNRLTLKQQRLITIAIKQARILSLLPFLNNEKQFER EST RT  LRTRN
Subjt:  MDKSKRLLLKSKRSFRKRLPPIQSGDRIDYRNMSLISRFISEQGKILSRRVNRLTLKQQRLITIAIKQARILSLLPFLNNEKQFERRESTARTIGLRTRN

Query:  K
        K
Subjt:  K
B1A957 30S ribosomal protein S18, chloroplastic2.3e-4292.08Show/hide
Query:  MDKSKRLLLKSKRSFRKRLPPIQSGDRIDYRNMSLISRFISEQGKILSRRVNRLTLKQQRLITIAIKQARILSLLPFLNNEKQFERRESTARTIGLRTRN
        MDKSKRL  KSKRSFR+RLPPIQSGDRIDYRNMSLISRFISEQGKILSRRVNRLTLKQQRLITIAIKQARILS LPFLNNEKQFER EST +T GLRTRN
Subjt:  MDKSKRLLLKSKRSFRKRLPPIQSGDRIDYRNMSLISRFISEQGKILSRRVNRLTLKQQRLITIAIKQARILSLLPFLNNEKQFERRESTARTIGLRTRN

Query:  K
        K
Subjt:  K
Q0G9U0 30S ribosomal protein S18, chloroplastic1.4e-4293.07Show/hide
Query:  MDKSKRLLLKSKRSFRKRLPPIQSGDRIDYRNMSLISRFISEQGKILSRRVNRLTLKQQRLITIAIKQARILSLLPFLNNEKQFERRESTARTIGLRTRN
        MDKSKR  LKSKRSFR+RLPPIQSGDRIDYRNMSLISRFISEQGKILSRRVNRLTLKQQRLITIAIKQARILSLLPFLNNEKQFER EST RT GLR RN
Subjt:  MDKSKRLLLKSKRSFRKRLPPIQSGDRIDYRNMSLISRFISEQGKILSRRVNRLTLKQQRLITIAIKQARILSLLPFLNNEKQFERRESTARTIGLRTRN

Query:  K
        K
Subjt:  K
Q0ZIZ8 30S ribosomal protein S18, chloroplastic6.2e-4394.06Show/hide
Query:  MDKSKRLLLKSKRSFRKRLPPIQSGDRIDYRNMSLISRFISEQGKILSRRVNRLTLKQQRLITIAIKQARILSLLPFLNNEKQFERRESTARTIGLRTRN
        MDKSKR  LKSKRSFR+RLPPIQSGDRIDYRNMSLISRFISEQGKILSRRVNRLTLKQQRLITIAIKQARILS LPFLNNEKQFER ESTART GLRTRN
Subjt:  MDKSKRLLLKSKRSFRKRLPPIQSGDRIDYRNMSLISRFISEQGKILSRRVNRLTLKQQRLITIAIKQARILSLLPFLNNEKQFERRESTARTIGLRTRN

Query:  K
        K
Subjt:  K
Q2L928 30S ribosomal protein S18, chloroplastic1.4e-4293.07Show/hide
Query:  MDKSKRLLLKSKRSFRKRLPPIQSGDRIDYRNMSLISRFISEQGKILSRRVNRLTLKQQRLITIAIKQARILSLLPFLNNEKQFERRESTARTIGLRTRN
        MDKSKRL LKSKRSFR+RLPPIQSGDRIDYRNMSLISRFISEQGKILSRRVNRLTLKQQRLITIAIKQARILS LPFLNNEKQFER EST RT  LRTRN
Subjt:  MDKSKRLLLKSKRSFRKRLPPIQSGDRIDYRNMSLISRFISEQGKILSRRVNRLTLKQQRLITIAIKQARILSLLPFLNNEKQFERRESTARTIGLRTRN

Query:  K
        K
Subjt:  K
Arabidopsis top hitse value%identityAlignment
ATCG00650.1 ribosomal protein S189.1e-4289.11Show/hide
Query:  MDKSKRLLLKSKRSFRKRLPPIQSGDRIDYRNMSLISRFISEQGKILSRRVNRLTLKQQRLITIAIKQARILSLLPFLNNEKQFERRESTARTIGLRTRN
        M+KSKRL  KSKRSFR+RLPPIQSGDRIDYRNMSLISRFISEQGKILSRRVNR+TLKQQRLITIAIKQARILSLLPFLNN+KQFER EST RT  LRTR 
Subjt:  MDKSKRLLLKSKRSFRKRLPPIQSGDRIDYRNMSLISRFISEQGKILSRRVNRLTLKQQRLITIAIKQARILSLLPFLNNEKQFERRESTARTIGLRTRN

Query:  K
        K
Subjt:  K

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGATAAATCCAAGCGACTCCTTCTTAAATCCAAACGATCTTTTCGTAAGCGTTTGCCCCCGATTCAATCGGGGGATCGAATTGATTATAGAAACATGAGTTTAATTAG
TCGATTTATTAGTGAACAAGGAAAAATATTATCTAGACGGGTAAATAGATTGACCTTAAAACAGCAACGCTTAATTACTATTGCTATAAAACAAGCTCGTATTTTATCTT
TGTTACCTTTTCTTAATAATGAGAAACAATTTGAAAGAAGGGAGTCGACCGCTAGAACTATTGGTCTTAGAACCAGGAATAAATAG
mRNA sequenceShow/hide mRNA sequence
ATGGATAAATCCAAGCGACTCCTTCTTAAATCCAAACGATCTTTTCGTAAGCGTTTGCCCCCGATTCAATCGGGGGATCGAATTGATTATAGAAACATGAGTTTAATTAG
TCGATTTATTAGTGAACAAGGAAAAATATTATCTAGACGGGTAAATAGATTGACCTTAAAACAGCAACGCTTAATTACTATTGCTATAAAACAAGCTCGTATTTTATCTT
TGTTACCTTTTCTTAATAATGAGAAACAATTTGAAAGAAGGGAGTCGACCGCTAGAACTATTGGTCTTAGAACCAGGAATAAATAG
Protein sequenceShow/hide protein sequence
MDKSKRLLLKSKRSFRKRLPPIQSGDRIDYRNMSLISRFISEQGKILSRRVNRLTLKQQRLITIAIKQARILSLLPFLNNEKQFERRESTARTIGLRTRNK