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Sed0017479 (gene) of Chayote v1 genome

Gene IDSed0017479
OrganismSechium edule (Chayote v1)
DescriptionRetrotransposon protein
Genome locationLG13:20895406..20895729
RNA-Seq ExpressionSed0017479
SyntenySed0017479
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0047233.1 retrotransposon protein [Cucumis melo var. makuwa]3.3e-0734.91Show/hide
Query:  GEKRKRVSEKQEMLEVLRAGMNMQYEQIVRIADWPITTLQVTKEDNKSTRDEVATILQKLSPPLTSPQRVELMSILLKDLDEASVFLGVPENDRASYCDY
        G KRKR     +  +++R  +    EQ+ RIA+WPI    + ++D   TR E+   L+ + P LT   R  LM I++ ++D+   FL VP+N + SYC+ 
Subjt:  GEKRKRVSEKQEMLEVLRAGMNMQYEQIVRIADWPITTLQVTKEDNKSTRDEVATILQKLSPPLTSPQRVELMSILLKDLDEASVFLGVPENDRASYCDY

Query:  LLNRPR
        +L   R
Subjt:  LLNRPR
KAA0048280.1 retrotransposon protein [Cucumis melo var. makuwa]3.3e-0734.91Show/hide
Query:  GEKRKRVSEKQEMLEVLRAGMNMQYEQIVRIADWPITTLQVTKEDNKSTRDEVATILQKLSPPLTSPQRVELMSILLKDLDEASVFLGVPENDRASYCDY
        G KRKR     +  +++R  M    EQ+ RIA+WPI    + ++D   TR E+   L+ + P LT   R  LM I+++++D+   FL VP+N +  YC  
Subjt:  GEKRKRVSEKQEMLEVLRAGMNMQYEQIVRIADWPITTLQVTKEDNKSTRDEVATILQKLSPPLTSPQRVELMSILLKDLDEASVFLGVPENDRASYCDY

Query:  LLNRPR
        +L   R
Subjt:  LLNRPR
KAA0049583.1 retrotransposon protein [Cucumis melo var. makuwa]1.5e-0734.91Show/hide
Query:  GEKRKRVSEKQEMLEVLRAGMNMQYEQIVRIADWPITTLQVTKEDNKSTRDEVATILQKLSPPLTSPQRVELMSILLKDLDEASVFLGVPENDRASYCDY
        G KRKR     +  +++R  +   +EQ+ RIADWP+    + ++D   TR EV   L+ + P LT   R  LM IL++++D+   FL V +N +  YC  
Subjt:  GEKRKRVSEKQEMLEVLRAGMNMQYEQIVRIADWPITTLQVTKEDNKSTRDEVATILQKLSPPLTSPQRVELMSILLKDLDEASVFLGVPENDRASYCDY

Query:  LLNRPR
        +L   R
Subjt:  LLNRPR
KAA0051580.1 retrotransposon protein [Cucumis melo var. makuwa]1.9e-0736.79Show/hide
Query:  GEKRKRVSEKQEMLEVLRAGMNMQYEQIVRIADWPITTLQVTKEDNKSTRDEVATILQKLSPPLTSPQRVELMSILLKDLDEASVFLGVPENDRASYCDY
        G KRKR     +  +++R  +    EQ+ RIA+WPI  LQ    D   TR E+   L+ + P LT   R  LM IL++++D+   FL VP+N +  YC  
Subjt:  GEKRKRVSEKQEMLEVLRAGMNMQYEQIVRIADWPITTLQVTKEDNKSTRDEVATILQKLSPPLTSPQRVELMSILLKDLDEASVFLGVPENDRASYCDY

Query:  LLNRPR
        +L   R
Subjt:  LLNRPR
KAA0054687.1 retrotransposon protein [Cucumis melo var. makuwa]3.3e-0734.91Show/hide
Query:  GEKRKRVSEKQEMLEVLRAGMNMQYEQIVRIADWPITTLQVTKEDNKSTRDEVATILQKLSPPLTSPQRVELMSILLKDLDEASVFLGVPENDRASYCDY
        G KRKR     +  +++R  +    EQ+ RIA+WPI    + ++D   TR E+   L+ + P LT   R  LM IL++++D+   FL VP+N +  YC+ 
Subjt:  GEKRKRVSEKQEMLEVLRAGMNMQYEQIVRIADWPITTLQVTKEDNKSTRDEVATILQKLSPPLTSPQRVELMSILLKDLDEASVFLGVPENDRASYCDY

Query:  LLNRPR
        +L   R
Subjt:  LLNRPR
TrEMBL top hitse value%identityAlignment
A0A5A7TYQ6 Retrotransposon protein1.6e-0734.91Show/hide
Query:  GEKRKRVSEKQEMLEVLRAGMNMQYEQIVRIADWPITTLQVTKEDNKSTRDEVATILQKLSPPLTSPQRVELMSILLKDLDEASVFLGVPENDRASYCDY
        G KRKR     +  +++R  M    EQ+ RIA+WPI    + ++D   TR E+   L+ + P LT   R  LM I+++++D+   FL VP+N +  YC  
Subjt:  GEKRKRVSEKQEMLEVLRAGMNMQYEQIVRIADWPITTLQVTKEDNKSTRDEVATILQKLSPPLTSPQRVELMSILLKDLDEASVFLGVPENDRASYCDY

Query:  LLNRPR
        +L   R
Subjt:  LLNRPR
A0A5A7U169 Retrotransposon protein7.1e-0834.91Show/hide
Query:  GEKRKRVSEKQEMLEVLRAGMNMQYEQIVRIADWPITTLQVTKEDNKSTRDEVATILQKLSPPLTSPQRVELMSILLKDLDEASVFLGVPENDRASYCDY
        G KRKR     +  +++R  +   +EQ+ RIADWP+    + ++D   TR EV   L+ + P LT   R  LM IL++++D+   FL V +N +  YC  
Subjt:  GEKRKRVSEKQEMLEVLRAGMNMQYEQIVRIADWPITTLQVTKEDNKSTRDEVATILQKLSPPLTSPQRVELMSILLKDLDEASVFLGVPENDRASYCDY

Query:  LLNRPR
        +L   R
Subjt:  LLNRPR
A0A5A7U8U9 Retrotransposon protein9.2e-0836.79Show/hide
Query:  GEKRKRVSEKQEMLEVLRAGMNMQYEQIVRIADWPITTLQVTKEDNKSTRDEVATILQKLSPPLTSPQRVELMSILLKDLDEASVFLGVPENDRASYCDY
        G KRKR     +  +++R  +    EQ+ RIA+WPI  LQ    D   TR E+   L+ + P LT   R  LM IL++++D+   FL VP+N +  YC  
Subjt:  GEKRKRVSEKQEMLEVLRAGMNMQYEQIVRIADWPITTLQVTKEDNKSTRDEVATILQKLSPPLTSPQRVELMSILLKDLDEASVFLGVPENDRASYCDY

Query:  LLNRPR
        +L   R
Subjt:  LLNRPR
A0A5A7UJB1 Retrotransposon protein1.6e-0734.91Show/hide
Query:  GEKRKRVSEKQEMLEVLRAGMNMQYEQIVRIADWPITTLQVTKEDNKSTRDEVATILQKLSPPLTSPQRVELMSILLKDLDEASVFLGVPENDRASYCDY
        G KRKR     +  +++R  +    EQ+ RIA+WPI    + ++D   TR E+   L+ + P LT   R  LM IL++++D+   FL VP+N +  YC+ 
Subjt:  GEKRKRVSEKQEMLEVLRAGMNMQYEQIVRIADWPITTLQVTKEDNKSTRDEVATILQKLSPPLTSPQRVELMSILLKDLDEASVFLGVPENDRASYCDY

Query:  LLNRPR
        +L   R
Subjt:  LLNRPR
A0A5D3D058 Retrotransposon protein1.6e-0733.02Show/hide
Query:  GEKRKRVSEKQEMLEVLRAGMNMQYEQIVRIADWPITTLQVTKEDNKSTRDEVATILQKLSPPLTSPQRVELMSILLKDLDEASVFLGVPENDRASYCDY
        G KRKR     +  +++R  +  + EQ+ RIA+WPI    + ++D   TR E+   L+ + P LT   R   M IL++++D+   FL +P+N +  YC  
Subjt:  GEKRKRVSEKQEMLEVLRAGMNMQYEQIVRIADWPITTLQVTKEDNKSTRDEVATILQKLSPPLTSPQRVELMSILLKDLDEASVFLGVPENDRASYCDY

Query:  LLNRPR
        +L   R
Subjt:  LLNRPR
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGAGAGAAGAGAAAAAGGGTCTCAGAAAAGCAGGAAATGCTTGAGGTGTTGCGTGCTGGCATGAACATGCAGTACGAGCAAATCGTGAGGATTGCTGATTGGCCTAT
CACAACCCTACAAGTGACAAAGGAGGATAATAAATCTACAAGAGATGAAGTCGCTACAATTCTTCAAAAATTATCACCGCCATTAACCAGTCCACAACGGGTTGAACTGA
TGAGCATCCTTTTAAAGGATCTCGACGAAGCTTCTGTTTTTCTTGGAGTCCCTGAAAATGATCGGGCCAGCTACTGCGATTATCTATTGAACAGACCCAGATGA
mRNA sequenceShow/hide mRNA sequence
ATGGGAGAGAAGAGAAAAAGGGTCTCAGAAAAGCAGGAAATGCTTGAGGTGTTGCGTGCTGGCATGAACATGCAGTACGAGCAAATCGTGAGGATTGCTGATTGGCCTAT
CACAACCCTACAAGTGACAAAGGAGGATAATAAATCTACAAGAGATGAAGTCGCTACAATTCTTCAAAAATTATCACCGCCATTAACCAGTCCACAACGGGTTGAACTGA
TGAGCATCCTTTTAAAGGATCTCGACGAAGCTTCTGTTTTTCTTGGAGTCCCTGAAAATGATCGGGCCAGCTACTGCGATTATCTATTGAACAGACCCAGATGA
Protein sequenceShow/hide protein sequence
MGEKRKRVSEKQEMLEVLRAGMNMQYEQIVRIADWPITTLQVTKEDNKSTRDEVATILQKLSPPLTSPQRVELMSILLKDLDEASVFLGVPENDRASYCDYLLNRPR