; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Sed0017506 (gene) of Chayote v1 genome

Gene IDSed0017506
OrganismSechium edule (Chayote v1)
DescriptionTranscription factor like
Genome locationLG06:40226144..40227203
RNA-Seq ExpressionSed0017506
SyntenySed0017506
Gene Ontology termsGO:0006355 - regulation of transcription, DNA-templated (biological process)
GO:0040008 - regulation of growth (biological process)
GO:0005634 - nucleus (cellular component)
GO:0046983 - protein dimerization activity (molecular function)
InterPro domainsIPR011598 - Myc-type, basic helix-loop-helix (bHLH) domain
IPR036638 - Helix-loop-helix DNA-binding domain superfamily
IPR044293 - Transcription factor PRE


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004135185.1 transcription factor PRE6 [Cucumis sativus]2.0e-3287.5Show/hide
Query:  MSGRNSRSRRSSVGSRNTISDDQIADLISKLQHLIPEIRNARSSSTVSGSKVLQEICNYIRNLQREVGDLSDRLSELLASTDPESAQAAIIRTLLM
        MSGR+SRSRRS VGSRN ISD+QIADLISKLQ LIPEIRN RSSS VS SKVLQE CNYIR+LQREV DLSDRLSELLASTDPESAQAAIIR+LLM
Subjt:  MSGRNSRSRRSSVGSRNTISDDQIADLISKLQHLIPEIRNARSSSTVSGSKVLQEICNYIRNLQREVGDLSDRLSELLASTDPESAQAAIIRTLLM

XP_008446331.1 PREDICTED: transcription factor PRE6-like [Cucumis melo]4.5e-3286.46Show/hide
Query:  MSGRNSRSRRSSVGSRNTISDDQIADLISKLQHLIPEIRNARSSSTVSGSKVLQEICNYIRNLQREVGDLSDRLSELLASTDPESAQAAIIRTLLM
        MSGR+SRSRRS VGSRN ISD+QIADLISKLQ LIPEIRN RSSS VS SKVLQE CNYIR+LQREV DLSDRLS+LLASTDPESAQAAIIR+LLM
Subjt:  MSGRNSRSRRSSVGSRNTISDDQIADLISKLQHLIPEIRNARSSSTVSGSKVLQEICNYIRNLQREVGDLSDRLSELLASTDPESAQAAIIRTLLM

XP_022151230.1 transcription factor PRE6-like [Momordica charantia]3.8e-3186.46Show/hide
Query:  MSGRNSRSRRSSVGSRNTISDDQIADLISKLQHLIPEIRNARSSSTVSGSKVLQEICNYIRNLQREVGDLSDRLSELLASTDPESAQAAIIRTLLM
        MS R+SRSRRS V SRN ISDDQIADLISKLQ LIPEIRNARSSS VS SKVLQE CNYIR+LQREV DLS+RLSELLASTDPESAQAAIIR+LLM
Subjt:  MSGRNSRSRRSSVGSRNTISDDQIADLISKLQHLIPEIRNARSSSTVSGSKVLQEICNYIRNLQREVGDLSDRLSELLASTDPESAQAAIIRTLLM

XP_022945906.1 transcription factor PRE6-like [Cucurbita moschata]2.9e-3186.46Show/hide
Query:  MSGRNSRSRRSSVGSRNTISDDQIADLISKLQHLIPEIRNARSSSTVSGSKVLQEICNYIRNLQREVGDLSDRLSELLASTDPESAQAAIIRTLLM
        MS R+SRSRRSSV S N ISD+QIADLISKLQ LIPEIRNARSSS VS SKVLQE CNYIR+LQREVGDLSDRLSELL STDPESAQAAIIR+LLM
Subjt:  MSGRNSRSRRSSVGSRNTISDDQIADLISKLQHLIPEIRNARSSSTVSGSKVLQEICNYIRNLQREVGDLSDRLSELLASTDPESAQAAIIRTLLM

XP_038893351.1 transcription factor PRE6-like [Benincasa hispida]5.8e-3287.5Show/hide
Query:  MSGRNSRSRRSSVGSRNTISDDQIADLISKLQHLIPEIRNARSSSTVSGSKVLQEICNYIRNLQREVGDLSDRLSELLASTDPESAQAAIIRTLLM
        MSGR+SRSRRS V SRN ISDDQIADLISKLQ LIPEIRN RSSS VS SKVLQE CNYIR+LQREV DLSDRLSELLASTDPESAQAAIIR+LLM
Subjt:  MSGRNSRSRRSSVGSRNTISDDQIADLISKLQHLIPEIRNARSSSTVSGSKVLQEICNYIRNLQREVGDLSDRLSELLASTDPESAQAAIIRTLLM

TrEMBL top hitse value%identityAlignment
A0A0A0KQJ7 Transcription regulator9.7e-3387.5Show/hide
Query:  MSGRNSRSRRSSVGSRNTISDDQIADLISKLQHLIPEIRNARSSSTVSGSKVLQEICNYIRNLQREVGDLSDRLSELLASTDPESAQAAIIRTLLM
        MSGR+SRSRRS VGSRN ISD+QIADLISKLQ LIPEIRN RSSS VS SKVLQE CNYIR+LQREV DLSDRLSELLASTDPESAQAAIIR+LLM
Subjt:  MSGRNSRSRRSSVGSRNTISDDQIADLISKLQHLIPEIRNARSSSTVSGSKVLQEICNYIRNLQREVGDLSDRLSELLASTDPESAQAAIIRTLLM

A0A1S3BFH5 transcription factor PRE6-like2.2e-3286.46Show/hide
Query:  MSGRNSRSRRSSVGSRNTISDDQIADLISKLQHLIPEIRNARSSSTVSGSKVLQEICNYIRNLQREVGDLSDRLSELLASTDPESAQAAIIRTLLM
        MSGR+SRSRRS VGSRN ISD+QIADLISKLQ LIPEIRN RSSS VS SKVLQE CNYIR+LQREV DLSDRLS+LLASTDPESAQAAIIR+LLM
Subjt:  MSGRNSRSRRSSVGSRNTISDDQIADLISKLQHLIPEIRNARSSSTVSGSKVLQEICNYIRNLQREVGDLSDRLSELLASTDPESAQAAIIRTLLM

A0A6J1DAM4 transcription factor PRE6-like1.8e-3186.46Show/hide
Query:  MSGRNSRSRRSSVGSRNTISDDQIADLISKLQHLIPEIRNARSSSTVSGSKVLQEICNYIRNLQREVGDLSDRLSELLASTDPESAQAAIIRTLLM
        MS R+SRSRRS V SRN ISDDQIADLISKLQ LIPEIRNARSSS VS SKVLQE CNYIR+LQREV DLS+RLSELLASTDPESAQAAIIR+LLM
Subjt:  MSGRNSRSRRSSVGSRNTISDDQIADLISKLQHLIPEIRNARSSSTVSGSKVLQEICNYIRNLQREVGDLSDRLSELLASTDPESAQAAIIRTLLM

A0A6J1G268 transcription factor PRE6-like1.4e-3186.46Show/hide
Query:  MSGRNSRSRRSSVGSRNTISDDQIADLISKLQHLIPEIRNARSSSTVSGSKVLQEICNYIRNLQREVGDLSDRLSELLASTDPESAQAAIIRTLLM
        MS R+SRSRRSSV S N ISD+QIADLISKLQ LIPEIRNARSSS VS SKVLQE CNYIR+LQREVGDLSDRLSELL STDPESAQAAIIR+LLM
Subjt:  MSGRNSRSRRSSVGSRNTISDDQIADLISKLQHLIPEIRNARSSSTVSGSKVLQEICNYIRNLQREVGDLSDRLSELLASTDPESAQAAIIRTLLM

A0A6J1HXN1 transcription factor PRE6-like7.0e-3185.42Show/hide
Query:  MSGRNSRSRRSSVGSRNTISDDQIADLISKLQHLIPEIRNARSSSTVSGSKVLQEICNYIRNLQREVGDLSDRLSELLASTDPESAQAAIIRTLLM
        MS R+SRSRRSSV S N ISD+QIADLISKLQ LIPEIRNARSSS VS SKVLQE CNYIR+LQREV DLSDRLSELL STDPESAQAAIIR+LLM
Subjt:  MSGRNSRSRRSSVGSRNTISDDQIADLISKLQHLIPEIRNARSSSTVSGSKVLQEICNYIRNLQREVGDLSDRLSELLASTDPESAQAAIIRTLLM

SwissProt top hitse value%identityAlignment
B8APB5 Transcription factor ILI63.7e-2162.5Show/hide
Query:  MSGRNSRSRRSSVGSRNTISDDQIADLISKLQHLIPEIRNARSSSTVSGSKVLQEICNYIRNLQREVGDLSDRLSELLASTDPESAQAAIIRTLLM
        MS R SRSR+S     + I+D+QI+DL+SKLQ L+PE R  RS+  V  S+VLQE CNYIR+L +EV DLS+RLSELLA++D  SAQAAIIR+LLM
Subjt:  MSGRNSRSRRSSVGSRNTISDDQIADLISKLQHLIPEIRNARSSSTVSGSKVLQEICNYIRNLQREVGDLSDRLSELLASTDPESAQAAIIRTLLM

Q0DUR2 Transcription factor ILI63.7e-2162.5Show/hide
Query:  MSGRNSRSRRSSVGSRNTISDDQIADLISKLQHLIPEIRNARSSSTVSGSKVLQEICNYIRNLQREVGDLSDRLSELLASTDPESAQAAIIRTLLM
        MS R SRSR+S     + I+D+QI+DL+SKLQ L+PE R  RS+  V  S+VLQE CNYIR+L +EV DLS+RLSELLA++D  SAQAAIIR+LLM
Subjt:  MSGRNSRSRRSSVGSRNTISDDQIADLISKLQHLIPEIRNARSSSTVSGSKVLQEICNYIRNLQREVGDLSDRLSELLASTDPESAQAAIIRTLLM

Q8GW32 Transcription factor PRE61.9e-2572.63Show/hide
Query:  MSGRNSRSRRSSVGSRNTISDDQIADLISKLQHLIPEIRNARSSSTVSGSKVLQEICNYIRNLQREVGDLSDRLSELLASTDPESAQAAIIRTLL
        MS R S   R S  SR  ISDDQI+DL+SKLQHLIPE+R  RS   VS SKVLQE CNYIRNL REV DLSDRLSELLASTD  SA+AAIIR+LL
Subjt:  MSGRNSRSRRSSVGSRNTISDDQIADLISKLQHLIPEIRNARSSSTVSGSKVLQEICNYIRNLQREVGDLSDRLSELLASTDPESAQAAIIRTLL

Q9CA64 Transcription factor PRE36.7e-2366.32Show/hide
Query:  MSGRNSRSRRSSVGSRNTISDDQIADLISKLQHLIPEIRNARSSSTVSGSKVLQEICNYIRNLQREVGDLSDRLSELLASTDPESAQAAIIRTLL
        MSGR SRSR+SS  SR  IS+DQI DLI KLQ L+PE+R++R S  VS ++VLQ+ CNYIRNL REV DLS+RLSELLA++D  +AQAA+IR+LL
Subjt:  MSGRNSRSRRSSVGSRNTISDDQIADLISKLQHLIPEIRNARSSSTVSGSKVLQEICNYIRNLQREVGDLSDRLSELLASTDPESAQAAIIRTLL

Q9LXG5 Transcription factor PRE23.9e-2367.42Show/hide
Query:  RSRRSSVGSRNTISDDQIADLISKLQHLIPEIRNARSSSTVSGSKVLQEICNYIRNLQREVGDLSDRLSELLASTDPESAQAAIIRTLL
        RSR++S  SR  ISDDQI DLISKL+  IPEIR  R S+TVS SKVLQE CNYIRNL +E  DLSDRL++LL S DP S QAA+IR+L+
Subjt:  RSRRSSVGSRNTISDDQIADLISKLQHLIPEIRNARSSSTVSGSKVLQEICNYIRNLQREVGDLSDRLSELLASTDPESAQAAIIRTLL

Arabidopsis top hitse value%identityAlignment
AT1G26945.1 basic helix-loop-helix (bHLH) DNA-binding superfamily protein1.3e-2672.63Show/hide
Query:  MSGRNSRSRRSSVGSRNTISDDQIADLISKLQHLIPEIRNARSSSTVSGSKVLQEICNYIRNLQREVGDLSDRLSELLASTDPESAQAAIIRTLL
        MS R S   R S  SR  ISDDQI+DL+SKLQHLIPE+R  RS   VS SKVLQE CNYIRNL REV DLSDRLSELLASTD  SA+AAIIR+LL
Subjt:  MSGRNSRSRRSSVGSRNTISDDQIADLISKLQHLIPEIRNARSSSTVSGSKVLQEICNYIRNLQREVGDLSDRLSELLASTDPESAQAAIIRTLL

AT1G74500.1 activation-tagged BRI1(brassinosteroid-insensitive 1)-suppressor 14.8e-2466.32Show/hide
Query:  MSGRNSRSRRSSVGSRNTISDDQIADLISKLQHLIPEIRNARSSSTVSGSKVLQEICNYIRNLQREVGDLSDRLSELLASTDPESAQAAIIRTLL
        MSGR SRSR+SS  SR  IS+DQI DLI KLQ L+PE+R++R S  VS ++VLQ+ CNYIRNL REV DLS+RLSELLA++D  +AQAA+IR+LL
Subjt:  MSGRNSRSRRSSVGSRNTISDDQIADLISKLQHLIPEIRNARSSSTVSGSKVLQEICNYIRNLQREVGDLSDRLSELLASTDPESAQAAIIRTLL

AT3G28857.1 basic helix-loop-helix (bHLH) DNA-binding family protein2.6e-2261.96Show/hide
Query:  NSRSRRSSVGSRNTISDDQIADLISKLQHLIPEIRNARSSSTVSGSKVLQEICNYIRNLQREVGDLSDRLSELLASTDPESAQAAIIRTLLM
        N RSR++S  SR  ISDDQ+ DL+SKL+  +PEI   R S  VS SKVLQE CNYIR L REV +LSDRLS+LL S D +S +AA+IR+LLM
Subjt:  NSRSRRSSVGSRNTISDDQIADLISKLQHLIPEIRNARSSSTVSGSKVLQEICNYIRNLQREVGDLSDRLSELLASTDPESAQAAIIRTLLM

AT5G15160.1 BANQUO 22.8e-2467.42Show/hide
Query:  RSRRSSVGSRNTISDDQIADLISKLQHLIPEIRNARSSSTVSGSKVLQEICNYIRNLQREVGDLSDRLSELLASTDPESAQAAIIRTLL
        RSR++S  SR  ISDDQI DLISKL+  IPEIR  R S+TVS SKVLQE CNYIRNL +E  DLSDRL++LL S DP S QAA+IR+L+
Subjt:  RSRRSSVGSRNTISDDQIADLISKLQHLIPEIRNARSSSTVSGSKVLQEICNYIRNLQREVGDLSDRLSELLASTDPESAQAAIIRTLL

AT5G39860.1 basic helix-loop-helix (bHLH) DNA-binding family protein1.7e-2159.78Show/hide
Query:  NSRSRRSSVGSRNTISDDQIADLISKLQHLIPEIRNARSSSTVSGSKVLQEICNYIRNLQREVGDLSDRLSELLASTDPESAQAAIIRTLLM
        N RSR+SS   R  ISD+Q+ DL+SKL+ ++PEI   R S   S SKVLQE CNYIRNL REV +LS+RLS+LL S D +S +AA+IR+LLM
Subjt:  NSRSRRSSVGSRNTISDDQIADLISKLQHLIPEIRNARSSSTVSGSKVLQEICNYIRNLQREVGDLSDRLSELLASTDPESAQAAIIRTLLM


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCGGGCAGAAACTCACGTTCTAGGCGCTCGTCTGTTGGTTCTAGGAACACTATTTCTGACGACCAGATTGCTGATTTGATCTCCAAGTTACAGCACCTCATCCCCGA
GATTCGCAATGCCCGTTCCTCTTCCACGGTATCAGGTTCAAAGGTTCTACAAGAGATTTGCAATTACATAAGAAACTTGCAAAGAGAGGTGGGGGACTTAAGCGACCGAT
TATCAGAACTATTGGCTTCAACAGACCCTGAAAGTGCTCAAGCTGCAATAATTAGAACTTTACTTATGTAA
mRNA sequenceShow/hide mRNA sequence
ATGTCGGGCAGAAACTCACGTTCTAGGCGCTCGTCTGTTGGTTCTAGGAACACTATTTCTGACGACCAGATTGCTGATTTGATCTCCAAGTTACAGCACCTCATCCCCGA
GATTCGCAATGCCCGTTCCTCTTCCACGGTATCAGGTTCAAAGGTTCTACAAGAGATTTGCAATTACATAAGAAACTTGCAAAGAGAGGTGGGGGACTTAAGCGACCGAT
TATCAGAACTATTGGCTTCAACAGACCCTGAAAGTGCTCAAGCTGCAATAATTAGAACTTTACTTATGTAA
Protein sequenceShow/hide protein sequence
MSGRNSRSRRSSVGSRNTISDDQIADLISKLQHLIPEIRNARSSSTVSGSKVLQEICNYIRNLQREVGDLSDRLSELLASTDPESAQAAIIRTLLM