; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Sed0017511 (gene) of Chayote v1 genome

Gene IDSed0017511
OrganismSechium edule (Chayote v1)
Description40S ribosomal protein S27
Genome locationLG07:1314644..1316177
RNA-Seq ExpressionSed0017511
SyntenySed0017511
Gene Ontology termsGO:0000028 - ribosomal small subunit assembly (biological process)
GO:0006412 - translation (biological process)
GO:0022627 - cytosolic small ribosomal subunit (cellular component)
GO:0003723 - RNA binding (molecular function)
GO:0003735 - structural constituent of ribosome (molecular function)
GO:0046872 - metal ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
ACH63219.1 ribosomal protein S27-like protein [Rheum australe]2.8e-4197.67Show/hide
Query:  MVLQNDIDLLNPPAELEKKKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQSVVVCGNCQAVLCQPTGGRARLTEGCSFRRKGD
        MVLQNDIDLLNPP ELEKKKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQ+VVVCGNCQAVLCQPTGGRARLTEGCSFRRKGD
Subjt:  MVLQNDIDLLNPPAELEKKKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQSVVVCGNCQAVLCQPTGGRARLTEGCSFRRKGD

GAY68717.1 hypothetical protein CUMW_266320 [Citrus unshiu]2.1e-4197.67Show/hide
Query:  MVLQNDIDLLNPPAELEKKKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQSVVVCGNCQAVLCQPTGGRARLTEGCSFRRKGD
        MVLQNDIDLLNPPAELEKKKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQ+VVVCGNCQ+VLCQPTGGRARLTEGCSFRRKGD
Subjt:  MVLQNDIDLLNPPAELEKKKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQSVVVCGNCQAVLCQPTGGRARLTEGCSFRRKGD

KAF5741232.1 40S ribosomal protein S27-2 [Tripterygium wilfordii]2.8e-4197.67Show/hide
Query:  MVLQNDIDLLNPPAELEKKKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQSVVVCGNCQAVLCQPTGGRARLTEGCSFRRKGD
        MVLQNDIDLLNPPAELEKKKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQ+VVVCGNCQ VLCQPTGGRARLTEGCSFRRKGD
Subjt:  MVLQNDIDLLNPPAELEKKKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQSVVVCGNCQAVLCQPTGGRARLTEGCSFRRKGD

XP_006446889.1 40S ribosomal protein S27-2 [Citrus clementina]2.1e-4197.67Show/hide
Query:  MVLQNDIDLLNPPAELEKKKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQSVVVCGNCQAVLCQPTGGRARLTEGCSFRRKGD
        MVLQNDIDLLNPPAELEKKKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQ+VVVCGNCQ+VLCQPTGGRARLTEGCSFRRKGD
Subjt:  MVLQNDIDLLNPPAELEKKKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQSVVVCGNCQAVLCQPTGGRARLTEGCSFRRKGD

XP_010695944.1 PREDICTED: 40S ribosomal protein S27-2 [Beta vulgaris subsp. vulgaris]2.8e-4197.67Show/hide
Query:  MVLQNDIDLLNPPAELEKKKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQSVVVCGNCQAVLCQPTGGRARLTEGCSFRRKGD
        MVLQNDIDLLNPPAELEKKKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQ+VVVCGNCQ VLCQPTGGRARLTEGCSFRRKGD
Subjt:  MVLQNDIDLLNPPAELEKKKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQSVVVCGNCQAVLCQPTGGRARLTEGCSFRRKGD

TrEMBL top hitse value%identityAlignment
A0A0K9QTH7 40S ribosomal protein S271.3e-4197.67Show/hide
Query:  MVLQNDIDLLNPPAELEKKKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQSVVVCGNCQAVLCQPTGGRARLTEGCSFRRKGD
        MVLQNDIDLLNPPAELEKKKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQ+VVVCGNCQ VLCQPTGGRARLTEGCSFRRKGD
Subjt:  MVLQNDIDLLNPPAELEKKKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQSVVVCGNCQAVLCQPTGGRARLTEGCSFRRKGD

A0A2H5QKC8 40S ribosomal protein S271.0e-4197.67Show/hide
Query:  MVLQNDIDLLNPPAELEKKKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQSVVVCGNCQAVLCQPTGGRARLTEGCSFRRKGD
        MVLQNDIDLLNPPAELEKKKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQ+VVVCGNCQ+VLCQPTGGRARLTEGCSFRRKGD
Subjt:  MVLQNDIDLLNPPAELEKKKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQSVVVCGNCQAVLCQPTGGRARLTEGCSFRRKGD

A0A2H5QVV3 40S ribosomal protein S271.0e-4197.67Show/hide
Query:  MVLQNDIDLLNPPAELEKKKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQSVVVCGNCQAVLCQPTGGRARLTEGCSFRRKGD
        MVLQNDIDLLNPPAELEKKKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQ+VVVCGNCQ+VLCQPTGGRARLTEGCSFRRKGD
Subjt:  MVLQNDIDLLNPPAELEKKKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQSVVVCGNCQAVLCQPTGGRARLTEGCSFRRKGD

A0A7J6FN08 40S ribosomal protein S271.3e-4197.67Show/hide
Query:  MVLQNDIDLLNPPAELEKKKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQSVVVCGNCQAVLCQPTGGRARLTEGCSFRRKGD
        MVLQNDIDLLNPPAELEKKKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQ+VVVCGNCQ VLCQPTGGRARLTEGCSFRRKGD
Subjt:  MVLQNDIDLLNPPAELEKKKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQSVVVCGNCQAVLCQPTGGRARLTEGCSFRRKGD

V4W2J8 40S ribosomal protein S271.0e-4197.67Show/hide
Query:  MVLQNDIDLLNPPAELEKKKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQSVVVCGNCQAVLCQPTGGRARLTEGCSFRRKGD
        MVLQNDIDLLNPPAELEKKKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQ+VVVCGNCQ+VLCQPTGGRARLTEGCSFRRKGD
Subjt:  MVLQNDIDLLNPPAELEKKKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQSVVVCGNCQAVLCQPTGGRARLTEGCSFRRKGD

SwissProt top hitse value%identityAlignment
O64650 40S ribosomal protein S27-14.2e-4089.29Show/hide
Query:  MVLQNDIDLLNPPAELEKKKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQSVVVCGNCQAVLCQPTGGRARLTEGCSFRRK
        MVLQNDIDLLNPPAELEK+KHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQ+VV+CGNCQ +LC PTGG+A+LTEGCSFR+K
Subjt:  MVLQNDIDLLNPPAELEKKKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQSVVVCGNCQAVLCQPTGGRARLTEGCSFRRK

P47903 40S ribosomal protein S271.6e-3683.72Show/hide
Query:  MVLQNDIDLLNPPAELEKKKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQSVVVCGNCQAVLCQPTGGRARLTEGCSFRRKGD
        MVL +DIDLLNPPAELEK KHK KRLVQSPNSFFMDVKCQGCFNITTVFSHSQ+VV+CG+C +VLC PTG   RLTEGCSFRRK D
Subjt:  MVLQNDIDLLNPPAELEKKKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQSVVVCGNCQAVLCQPTGGRARLTEGCSFRRKGD

Q8L953 40S ribosomal protein S27-35.4e-4090.48Show/hide
Query:  MVLQNDIDLLNPPAELEKKKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQSVVVCGNCQAVLCQPTGGRARLTEGCSFRRK
        MVLQNDIDLL+PP ELEK+KHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQ+VVVCGNCQ VLCQPTGG+ARL EGCSFR+K
Subjt:  MVLQNDIDLLNPPAELEKKKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQSVVVCGNCQAVLCQPTGGRARLTEGCSFRRK

Q96564 40S ribosomal protein S271.1e-4091.86Show/hide
Query:  MVLQNDIDLLNPPAELEKKKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQSVVVCGNCQAVLCQPTGGRARLTEGCSFRRKGD
        MVLQNDIDLLNPPAELEK KHK KRLVQSPNSFFMDVKCQGCFNITTVFSHSQ+VVVC  CQ VLCQPTGG+ARLTEGCSFRRKGD
Subjt:  MVLQNDIDLLNPPAELEKKKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQSVVVCGNCQAVLCQPTGGRARLTEGCSFRRKGD

Q9M2F1 40S ribosomal protein S27-25.2e-4393.02Show/hide
Query:  MVLQNDIDLLNPPAELEKKKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQSVVVCGNCQAVLCQPTGGRARLTEGCSFRRKGD
        MVLQNDIDLLNPPAELEK+KHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQ+VVVCGNCQ +LCQPTGG+A+LTEGCSFRRKGD
Subjt:  MVLQNDIDLLNPPAELEKKKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQSVVVCGNCQAVLCQPTGGRARLTEGCSFRRKGD

Arabidopsis top hitse value%identityAlignment
AT2G45710.1 Zinc-binding ribosomal protein family protein3.0e-4189.29Show/hide
Query:  MVLQNDIDLLNPPAELEKKKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQSVVVCGNCQAVLCQPTGGRARLTEGCSFRRK
        MVLQNDIDLLNPPAELEK+KHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQ+VV+CGNCQ +LC PTGG+A+LTEGCSFR+K
Subjt:  MVLQNDIDLLNPPAELEKKKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQSVVVCGNCQAVLCQPTGGRARLTEGCSFRRK

AT3G61110.1 ribosomal protein S273.7e-4493.02Show/hide
Query:  MVLQNDIDLLNPPAELEKKKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQSVVVCGNCQAVLCQPTGGRARLTEGCSFRRKGD
        MVLQNDIDLLNPPAELEK+KHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQ+VVVCGNCQ +LCQPTGG+A+LTEGCSFRRKGD
Subjt:  MVLQNDIDLLNPPAELEKKKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQSVVVCGNCQAVLCQPTGGRARLTEGCSFRRKGD

AT3G61111.1 Zinc-binding ribosomal protein family protein1.1e-3579.07Show/hide
Query:  MVLQNDIDLLNPPAELEKKKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQSVVVCGNCQAVLCQPTGGRARLTEGCSFRRKGD
        MVLQNDIDLLNPPAELEK+KHKLKRLV SPNS+FM V+C  C NITT+FSHSQ+VVVCG CQ VLCQPTGG+A+LT GCSFR+  D
Subjt:  MVLQNDIDLLNPPAELEKKKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQSVVVCGNCQAVLCQPTGGRARLTEGCSFRRKGD

AT5G47930.1 Zinc-binding ribosomal protein family protein3.9e-4190.48Show/hide
Query:  MVLQNDIDLLNPPAELEKKKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQSVVVCGNCQAVLCQPTGGRARLTEGCSFRRK
        MVLQNDIDLL+PP ELEK+KHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQ+VVVCGNCQ VLCQPTGG+ARL EGCSFR+K
Subjt:  MVLQNDIDLLNPPAELEKKKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQSVVVCGNCQAVLCQPTGGRARLTEGCSFRRK


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTTCTTCAAAACGATATTGATTTGCTCAATCCTCCGGCCGAGCTTGAGAAGAAAAAGCACAAGCTTAAGCGGCTTGTACAGTCGCCCAACTCGTTCTTCATGGATGT
GAAATGTCAGGGTTGCTTTAACATAACCACTGTGTTTAGTCATTCACAATCGGTCGTAGTATGTGGGAATTGCCAGGCGGTTTTGTGTCAGCCGACTGGAGGCCGAGCTA
GGCTCACAGAAGGATGCTCCTTTAGAAGAAAGGGCGACTAA
mRNA sequenceShow/hide mRNA sequence
AGGCACTTAAAAAACTAAAGGCTGAGATTTATTTCTAACGAAATCCAACGGTTCACAATTCTCAACCGAATCCCTTATATAAAACCTAAACGACGCTCTGTTCCTCCTTC
ACAGCATTCATCGCGAACTCTTGTTGGGATTTTAGGGTTCGCGATCCAAACAATTCGATTCTGATCAACATGGTTCTTCAAAACGATATTGATTTGCTCAATCCTCCGGC
CGAGCTTGAGAAGAAAAAGCACAAGCTTAAGCGGCTTGTACAGTCGCCCAACTCGTTCTTCATGGATGTGAAATGTCAGGGTTGCTTTAACATAACCACTGTGTTTAGTC
ATTCACAATCGGTCGTAGTATGTGGGAATTGCCAGGCGGTTTTGTGTCAGCCGACTGGAGGCCGAGCTAGGCTCACAGAAGGATGCTCCTTTAGAAGAAAGGGCGACTAA
TTCCTTGGCTCAGAATTGGCTTCTAGTAGGATCAGGACGGGTGGGTTTTTCGAATTTTTGATATTGCAATTGAGCAGATTTTGTCTGTTTTCTATGTTTTGGTTCTTGAA
TATTTAATTTTGATTAAGAAGAAGAGCATTTTGGCATCGCTGTTGCAGTTCGTTAATTTTAATGTTGTCAATGAAACTCAGTTTTGTTTGAAGTATTTCGCATTTAGTGT
TTTGCGTGTTCCCATATACTTATTCAATTGATTGGAATATTTTGATCTTGTTGAATTCA
Protein sequenceShow/hide protein sequence
MVLQNDIDLLNPPAELEKKKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQSVVVCGNCQAVLCQPTGGRARLTEGCSFRRKGD